data_U36 # _chem_comp.id U36 _chem_comp.name "2'-O-METHYOXYETHYL-URIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H19 N2 O10 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-05-12 _chem_comp.pdbx_modified_date 2013-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.260 _chem_comp.one_letter_code U _chem_comp.three_letter_code U36 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 468D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U36 P P P 0 1 N N N 17.660 -10.221 8.719 5.103 -0.030 -0.123 P U36 1 U36 OP1 OP1 O 0 1 N N N 18.046 -11.630 8.532 5.733 -1.333 -0.433 OP1 U36 2 U36 OP2 OP2 O 0 1 N N N 18.275 -9.413 9.809 5.991 0.749 0.970 OP2 U36 3 U36 OP3 OP3 O 0 1 N Y N 16.073 -10.206 8.879 5.010 0.853 -1.467 OP3 U36 4 U36 "O5'" "O5'" O 0 1 N N N 17.926 -9.415 7.380 3.623 -0.275 0.462 "O5'" U36 5 U36 "C5'" "C5'" C 0 1 N N N 17.301 -9.794 6.158 2.629 -1.033 -0.229 "C5'" U36 6 U36 "C4'" "C4'" C 0 1 N N R 17.386 -8.663 5.177 1.345 -1.068 0.603 "C4'" U36 7 U36 "O4'" "O4'" O 0 1 N N N 16.638 -7.533 5.674 0.780 0.251 0.685 "O4'" U36 8 U36 "C3'" "C3'" C 0 1 N N R 18.760 -8.074 4.968 0.301 -1.972 -0.082 "C3'" U36 9 U36 "O3'" "O3'" O 0 1 N N N 19.556 -8.889 4.124 -0.063 -3.055 0.777 "O3'" U36 10 U36 "C2'" "C2'" C 0 1 N N R 18.421 -6.721 4.359 -0.910 -1.038 -0.321 "C2'" U36 11 U36 "O2'" "O2'" O 0 1 N N N 18.065 -6.848 2.996 -2.138 -1.714 -0.040 "O2'" U36 12 U36 "C1'" "C1'" C 0 1 N N R 17.187 -6.340 5.159 -0.655 0.094 0.706 "C1'" U36 13 U36 N1 N1 N 0 1 N N N 17.536 -5.464 6.275 -1.316 1.332 0.284 N1 U36 14 U36 C2 C2 C 0 1 N N N 17.696 -4.127 6.006 -2.255 1.888 1.071 C2 U36 15 U36 O2 O2 O 0 1 N N N 17.547 -3.655 4.893 -2.545 1.356 2.125 O2 U36 16 U36 N3 N3 N 0 1 N N N 18.052 -3.357 7.083 -2.878 3.024 0.707 N3 U36 17 U36 C4 C4 C 0 1 N N N 18.259 -3.785 8.381 -2.567 3.626 -0.459 C4 U36 18 U36 O4 O4 O 0 1 N N N 18.561 -2.960 9.243 -3.130 4.655 -0.788 O4 U36 19 U36 C5 C5 C 0 1 N N N 18.071 -5.186 8.580 -1.581 3.052 -1.296 C5 U36 20 U36 C6 C6 C 0 1 N N N 17.716 -5.960 7.538 -0.968 1.914 -0.904 C6 U36 21 U36 "CA'" "CA'" C 0 1 N N N 17.572 -5.613 2.439 -2.717 -2.362 -1.174 "CA'" U36 22 U36 "CB'" "CB'" C 0 1 N N N 16.207 -5.692 1.751 -4.020 -3.049 -0.759 "CB'" U36 23 U36 "CD'" "CD'" C 0 1 N N N 14.065 -4.898 2.493 -6.231 -2.601 0.049 "CD'" U36 24 U36 "OC'" "OC'" O 0 1 N N N 15.041 -5.971 2.597 -4.973 -2.062 -0.360 "OC'" U36 25 U36 HOP2 HOP2 H 0 0 N N N 18.893 -9.949 10.291 6.897 0.930 0.685 HOP2 U36 26 U36 HOP3 HOP3 H 0 0 N N N 15.740 -11.094 8.819 4.606 1.722 -1.338 HOP3 U36 27 U36 "H5'1" "H5'1" H 0 0 N N N 17.811 -10.676 5.744 2.424 -0.570 -1.194 "H5'1" U36 28 U36 "H5'2" "H5'2" H 0 0 N N N 16.245 -10.036 6.347 2.989 -2.050 -0.384 "H5'2" U36 29 U36 "H4'" "H4'" H 0 1 N N N 16.980 -8.989 4.208 1.562 -1.441 1.604 "H4'" U36 30 U36 "H3'" "H3'" H 0 1 N N N 19.248 -7.924 5.942 0.687 -2.350 -1.029 "H3'" U36 31 U36 HA HA H 0 1 N N N 20.411 -8.491 4.014 0.673 -3.639 1.007 HA U36 32 U36 "H2'" "H2'" H 0 1 N N N 19.236 -6.000 4.520 -0.907 -0.649 -1.339 "H2'" U36 33 U36 "H1'" "H1'" H 0 1 N N N 16.468 -5.836 4.496 -0.994 -0.204 1.698 "H1'" U36 34 U36 H3 H3 H 0 1 N N N 18.175 -2.380 6.911 -3.553 3.412 1.286 H3 U36 35 U36 H5 H5 H 0 1 N N N 18.212 -5.621 9.558 -1.319 3.520 -2.233 H5 U36 36 U36 H6 H6 H 0 1 N N N 17.567 -7.017 7.705 -0.210 1.464 -1.528 H6 U36 37 U36 "HA'1" "HA'1" H 0 0 N N N 17.496 -4.880 3.256 -2.927 -1.622 -1.947 "HA'1" U36 38 U36 "HA'2" "HA'2" H 0 0 N N N 18.304 -5.261 1.697 -2.022 -3.106 -1.563 "HA'2" U36 39 U36 "HB'1" "HB'1" H 0 0 N N N 16.031 -4.726 1.254 -4.416 -3.616 -1.602 "HB'1" U36 40 U36 "HB'2" "HB'2" H 0 0 N N N 16.264 -6.488 0.994 -3.825 -3.724 0.074 "HB'2" U36 41 U36 "HD'1" "HD'1" H 0 0 N N N 13.200 -5.125 3.133 -6.898 -1.788 0.337 "HD'1" U36 42 U36 "HD'2" "HD'2" H 0 0 N N N 14.524 -3.953 2.818 -6.673 -3.158 -0.776 "HD'2" U36 43 U36 "HD'3" "HD'3" H 0 0 N N N 13.733 -4.804 1.448 -6.082 -3.266 0.899 "HD'3" U36 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U36 P OP1 DOUB N N 1 U36 P OP2 SING N N 2 U36 P OP3 SING N N 3 U36 P "O5'" SING N N 4 U36 OP2 HOP2 SING N N 5 U36 OP3 HOP3 SING N N 6 U36 "O5'" "C5'" SING N N 7 U36 "C5'" "C4'" SING N N 8 U36 "C5'" "H5'1" SING N N 9 U36 "C5'" "H5'2" SING N N 10 U36 "C4'" "O4'" SING N N 11 U36 "C4'" "C3'" SING N N 12 U36 "C4'" "H4'" SING N N 13 U36 "O4'" "C1'" SING N N 14 U36 "C3'" "O3'" SING N N 15 U36 "C3'" "C2'" SING N N 16 U36 "C3'" "H3'" SING N N 17 U36 "O3'" HA SING N N 18 U36 "C2'" "O2'" SING N N 19 U36 "C2'" "C1'" SING N N 20 U36 "C2'" "H2'" SING N N 21 U36 "O2'" "CA'" SING N N 22 U36 "C1'" N1 SING N N 23 U36 "C1'" "H1'" SING N N 24 U36 N1 C2 SING N N 25 U36 N1 C6 SING N N 26 U36 C2 O2 DOUB N N 27 U36 C2 N3 SING N N 28 U36 N3 C4 SING N N 29 U36 N3 H3 SING N N 30 U36 C4 O4 DOUB N N 31 U36 C4 C5 SING N N 32 U36 C5 C6 DOUB N N 33 U36 C5 H5 SING N N 34 U36 C6 H6 SING N N 35 U36 "CA'" "CB'" SING N N 36 U36 "CA'" "HA'1" SING N N 37 U36 "CA'" "HA'2" SING N N 38 U36 "CB'" "OC'" SING N N 39 U36 "CB'" "HB'1" SING N N 40 U36 "CB'" "HB'2" SING N N 41 U36 "CD'" "OC'" SING N N 42 U36 "CD'" "HD'1" SING N N 43 U36 "CD'" "HD'2" SING N N 44 U36 "CD'" "HD'3" SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U36 SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(OCCOC)C2O" U36 InChI InChI 1.03 "InChI=1S/C12H19N2O10P/c1-21-4-5-22-10-9(16)7(6-23-25(18,19)20)24-11(10)14-3-2-8(15)13-12(14)17/h2-3,7,9-11,16H,4-6H2,1H3,(H,13,15,17)(H2,18,19,20)/t7-,9-,10-,11-/m1/s1" U36 InChIKey InChI 1.03 LOGKNOMZHBMDQP-QCNRFFRDSA-N U36 SMILES_CANONICAL CACTVS 3.370 "COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O" U36 SMILES CACTVS 3.370 "COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O" U36 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COCCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O" U36 SMILES "OpenEye OEToolkits" 1.7.6 "COCCOC1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U36 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-O-(2-methoxyethyl)uridine 5'-(dihydrogen phosphate) ; U36 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-(2-methoxyethoxy)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U36 "Create component" 1999-05-12 RCSB U36 "Modify descriptor" 2011-06-04 RCSB U36 "Modify atom id" 2013-02-19 RCSB #