data_U3A # _chem_comp.id U3A _chem_comp.name "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H17 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-10 _chem_comp.pdbx_modified_date 2021-04-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U3A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6WIJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U3A C11 C1 C 0 1 N N N -14.599 -40.619 -16.303 -0.701 -1.367 0.184 C11 U3A 1 U3A C12 C2 C 0 1 N N N -15.464 -40.383 -17.485 -1.488 -2.477 0.040 C12 U3A 2 U3A C25 C3 C 0 1 N N N -15.348 -35.832 -14.905 -5.499 0.317 -0.264 C25 U3A 3 U3A C29 C4 C 0 1 Y N N -12.628 -41.124 -11.225 5.810 0.647 1.682 C29 U3A 4 U3A F27 F1 F 0 1 N N N -15.796 -35.543 -16.172 -5.118 -0.388 -1.411 F27 U3A 5 U3A F28 F2 F 0 1 N N N -15.732 -34.823 -14.060 -5.376 -0.512 0.855 F28 U3A 6 U3A C01 C5 C 0 1 N N N -8.635 -39.083 -13.277 9.394 0.371 -1.629 C01 U3A 7 U3A C03 C6 C 0 1 Y N N -10.639 -39.413 -12.048 7.247 0.549 -0.628 C03 U3A 8 U3A C04 C7 C 0 1 Y N N -10.784 -40.646 -12.675 5.866 0.684 -0.699 C04 U3A 9 U3A C05 C8 C 0 1 Y N N -11.794 -41.537 -12.274 5.132 0.729 0.473 C05 U3A 10 U3A C06 C9 C 0 1 N N N -11.980 -42.928 -12.965 3.632 0.864 0.438 C06 U3A 11 U3A C07 C10 C 0 1 N N N -13.417 -43.118 -13.537 2.995 -0.527 0.401 C07 U3A 12 U3A C09 C11 C 0 1 N N N -14.390 -41.993 -15.637 0.762 -1.498 0.331 C09 U3A 13 U3A C14 C12 C 0 1 N N N -15.579 -38.982 -18.041 -2.940 -2.282 -0.109 C14 U3A 14 U3A C17 C13 C 0 1 N N N -13.992 -38.118 -16.245 -2.638 0.005 0.045 C17 U3A 15 U3A C19 C14 C 0 1 Y N N -13.188 -36.965 -15.529 -3.230 1.359 0.051 C19 U3A 16 U3A C20 C15 C 0 1 Y N N -11.831 -37.016 -15.506 -2.413 2.480 0.199 C20 U3A 17 U3A C21 C16 C 0 1 Y N N -11.107 -36.009 -14.868 -2.972 3.742 0.205 C21 U3A 18 U3A C22 C17 C 0 1 Y N N -11.778 -34.959 -14.251 -4.339 3.896 0.063 C22 U3A 19 U3A C23 C18 C 0 1 Y N N -13.131 -34.912 -14.268 -5.155 2.789 -0.084 C23 U3A 20 U3A C24 C19 C 0 1 Y N N -13.861 -35.913 -14.900 -4.609 1.522 -0.097 C24 U3A 21 U3A C30 C20 C 0 1 Y N N -12.439 -39.886 -10.633 7.185 0.524 1.678 C30 U3A 22 U3A F26 F3 F 0 1 N N N -15.902 -36.980 -14.470 -6.828 0.734 -0.393 F26 U3A 23 U3A N08 N1 N 0 1 N N N -13.731 -41.950 -14.341 1.537 -0.396 0.367 N08 U3A 24 U3A N16 N2 N 0 1 N N N -14.843 -37.867 -17.416 -3.432 -1.037 -0.097 N16 U3A 25 U3A N18 N3 N 0 1 N N N -13.873 -39.496 -15.690 -1.297 -0.125 0.185 N18 U3A 26 U3A N31 N4 N 0 1 Y N N -11.460 -39.062 -11.047 7.857 0.479 0.544 N31 U3A 27 U3A O02 O1 O 0 1 N N N -9.622 -38.525 -12.457 7.977 0.499 -1.770 O02 U3A 28 U3A O10 O2 O 0 1 N N N -14.741 -43.035 -16.152 1.268 -2.600 0.420 O10 U3A 29 U3A O13 O3 O 0 1 N N N -16.185 -41.487 -18.101 -0.946 -3.720 0.033 O13 U3A 30 U3A O15 O4 O 0 1 N N N -16.258 -38.761 -18.981 -3.684 -3.241 -0.242 O15 U3A 31 U3A H1 H1 H 0 1 N N N -13.419 -41.772 -10.878 5.268 0.684 2.615 H1 U3A 32 U3A H2 H2 H 0 1 N N N -7.895 -38.312 -13.537 9.782 1.222 -1.070 H2 U3A 33 U3A H3 H3 H 0 1 N N N -8.136 -39.905 -12.742 9.624 -0.550 -1.094 H3 U3A 34 U3A H4 H4 H 0 1 N N N -9.098 -39.472 -14.196 9.856 0.343 -2.616 H4 U3A 35 U3A H5 H5 H 0 1 N N N -10.115 -40.921 -13.477 5.371 0.746 -1.657 H5 U3A 36 U3A H6 H6 H 0 1 N N N -11.786 -43.719 -12.225 3.294 1.395 1.328 H6 U3A 37 U3A H7 H7 H 0 1 N N N -11.257 -43.013 -13.790 3.338 1.422 -0.451 H7 U3A 38 U3A H8 H8 H 0 1 N N N -14.139 -43.210 -12.712 3.333 -1.057 -0.489 H8 U3A 39 U3A H9 H9 H 0 1 N N N -13.455 -44.023 -14.161 3.290 -1.085 1.290 H9 U3A 40 U3A H10 H10 H 0 1 N N N -11.313 -37.836 -15.981 -1.345 2.361 0.310 H10 U3A 41 U3A H11 H11 H 0 1 N N N -10.028 -36.045 -14.853 -2.341 4.610 0.320 H11 U3A 42 U3A H12 H12 H 0 1 N N N -11.218 -34.179 -13.757 -4.772 4.886 0.068 H12 U3A 43 U3A H13 H13 H 0 1 N N N -13.646 -34.093 -13.788 -6.222 2.916 -0.194 H13 U3A 44 U3A H14 H14 H 0 1 N N N -13.088 -39.578 -9.827 7.717 0.463 2.616 H14 U3A 45 U3A H15 H15 H 0 1 N N N -13.476 -41.054 -13.978 1.129 0.484 0.371 H15 U3A 46 U3A H16 H16 H 0 1 N N N -13.293 -39.659 -14.892 -0.748 0.669 0.283 H16 U3A 47 U3A H17 H17 H 0 1 N N N -16.685 -41.165 -18.842 -1.593 -4.430 -0.075 H17 U3A 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U3A O15 C14 DOUB N N 1 U3A O13 C12 SING N N 2 U3A C14 C12 SING N N 3 U3A C14 N16 SING N N 4 U3A C12 C11 DOUB N N 5 U3A N16 C17 DOUB N N 6 U3A C11 N18 SING N N 7 U3A C11 C09 SING N N 8 U3A C17 N18 SING N N 9 U3A C17 C19 SING N N 10 U3A F27 C25 SING N N 11 U3A O10 C09 DOUB N N 12 U3A C09 N08 SING N N 13 U3A C19 C20 DOUB Y N 14 U3A C19 C24 SING Y N 15 U3A C20 C21 SING Y N 16 U3A C25 C24 SING N N 17 U3A C25 F26 SING N N 18 U3A C25 F28 SING N N 19 U3A C24 C23 DOUB Y N 20 U3A C21 C22 DOUB Y N 21 U3A N08 C07 SING N N 22 U3A C23 C22 SING Y N 23 U3A C07 C06 SING N N 24 U3A C01 O02 SING N N 25 U3A C06 C05 SING N N 26 U3A C04 C05 DOUB Y N 27 U3A C04 C03 SING Y N 28 U3A O02 C03 SING N N 29 U3A C05 C29 SING Y N 30 U3A C03 N31 DOUB Y N 31 U3A C29 C30 DOUB Y N 32 U3A N31 C30 SING Y N 33 U3A C29 H1 SING N N 34 U3A C01 H2 SING N N 35 U3A C01 H3 SING N N 36 U3A C01 H4 SING N N 37 U3A C04 H5 SING N N 38 U3A C06 H6 SING N N 39 U3A C06 H7 SING N N 40 U3A C07 H8 SING N N 41 U3A C07 H9 SING N N 42 U3A C20 H10 SING N N 43 U3A C21 H11 SING N N 44 U3A C22 H12 SING N N 45 U3A C23 H13 SING N N 46 U3A C30 H14 SING N N 47 U3A N08 H15 SING N N 48 U3A N18 H16 SING N N 49 U3A O13 H17 SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U3A SMILES ACDLabs 12.01 "C=2(NC(c1ccccc1C(F)(F)F)=NC(C=2O)=O)C(NCCc3ccnc(c3)OC)=O" U3A InChI InChI 1.03 "InChI=1S/C20H17F3N4O4/c1-31-14-10-11(6-8-24-14)7-9-25-18(29)15-16(28)19(30)27-17(26-15)12-4-2-3-5-13(12)20(21,22)23/h2-6,8,10,28H,7,9H2,1H3,(H,25,29)(H,26,27,30)" U3A InChIKey InChI 1.03 AUIOMZXCKKSZAA-UHFFFAOYSA-N U3A SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3ccccc3C(F)(F)F)ccn1" U3A SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3ccccc3C(F)(F)F)ccn1" U3A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3ccccc3C(F)(F)F)O" U3A SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3ccccc3C(F)(F)F)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U3A "SYSTEMATIC NAME" ACDLabs 12.01 "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide" U3A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-4-oxidanylidene-2-[2-(trifluoromethyl)phenyl]-1~{H}-pyrimidine-6-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U3A "Create component" 2020-04-10 RCSB U3A "Initial release" 2021-04-14 RCSB ##