data_U3I # _chem_comp.id U3I _chem_comp.name "(3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H29 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-29 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TZX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U3I C1 C1 C 0 1 Y N N N N N -13.990 26.589 35.155 1.023 1.369 -0.086 C1 U3I 1 U3I C2 C2 C 0 1 Y N N N N N -14.714 27.486 35.965 1.080 -0.001 0.142 C2 U3I 2 U3I C3 C3 C 0 1 Y N N N N N -16.092 27.329 36.116 -0.088 -0.715 0.391 C3 U3I 3 U3I C12 C4 C 0 1 N N S N N N -19.472 24.023 34.306 -5.015 0.701 0.681 C12 U3I 4 U3I C13 C5 C 0 1 N N N N N N -19.956 23.329 35.603 -5.660 1.093 -0.653 C13 U3I 5 U3I C14 C6 C 0 1 N N N N N N -21.374 22.741 35.437 -5.358 -0.002 -1.681 C14 U3I 6 U3I C15 C7 C 0 1 N N N N N N -22.316 23.785 34.898 -5.834 -1.327 -1.147 C15 U3I 7 U3I C17 C8 C 0 1 N N N N N N -20.527 24.992 33.822 -5.510 -0.663 1.087 C17 U3I 8 U3I C20 C9 C 0 1 N N R N N N -13.391 28.529 37.873 3.426 0.141 -0.201 C20 U3I 9 U3I C21 C10 C 0 1 N N R N N N -12.966 30.017 38.087 4.678 -0.535 0.361 C21 U3I 10 U3I C22 C11 C 0 1 N N N N N N -14.247 27.968 39.045 3.551 0.260 -1.722 C22 U3I 11 U3I C24 C12 C 0 1 N N N N N N -12.278 31.186 35.899 7.095 -0.400 0.466 C24 U3I 12 U3I C25 C13 C 0 1 N N N N N N -10.844 31.327 36.462 7.234 -1.842 -0.028 C25 U3I 13 U3I C26 C14 C 0 1 N N N N N N -10.515 30.089 37.318 6.009 -2.647 0.414 C26 U3I 14 U3I C27 C15 C 0 1 N N N N N N -11.473 30.112 38.528 4.744 -1.981 -0.136 C27 U3I 15 U3I C28 C16 C 0 1 N N N N N N -14.345 31.972 37.157 5.777 1.619 0.253 C28 U3I 16 U3I C29 C17 C 0 1 N N N N N N -15.050 32.538 35.893 6.837 2.401 -0.525 C29 U3I 17 U3I C4 C18 C 0 1 Y N N N N N -16.736 26.287 35.463 -1.297 -0.065 0.411 C4 U3I 18 U3I C5 C19 C 0 1 Y N N N N N -16.021 25.408 34.665 -1.364 1.313 0.182 C5 U3I 19 U3I C6 C20 C 0 1 Y N N N N N -14.641 25.537 34.491 -0.187 2.027 -0.062 C6 U3I 20 U3I C7 C21 C 0 1 N N N N N N -18.222 25.940 35.498 -2.714 -0.527 0.643 C7 U3I 21 U3I C9 C22 C 0 1 N N N N N N -17.042 24.433 34.136 -2.775 1.727 0.263 C9 U3I 22 U3I N16 N1 N 0 1 N N N N N N -21.827 24.801 34.150 -5.874 -1.572 0.171 N16 U3I 23 U3I N23 N2 N 0 1 N N N N N N -13.322 30.908 36.929 5.871 0.193 -0.087 N23 U3I 24 U3I N8 N3 N 0 1 N N N N N N -18.258 24.768 34.619 -3.558 0.668 0.529 N8 U3I 25 U3I O10 O1 O 0 1 N N N N N N -16.775 23.506 33.389 -3.175 2.865 0.112 O10 U3I 26 U3I O11 O2 O 0 1 N N N N N N -14.153 28.565 36.656 2.276 -0.642 0.122 O11 U3I 27 U3I O18 O3 O 0 1 N N N N N N -20.179 25.943 33.137 -5.578 -0.943 2.264 O18 U3I 28 U3I O19 O4 O 0 1 N N N N N N -23.505 23.678 35.151 -6.187 -2.189 -1.923 O19 U3I 29 U3I H1 H1 H 0 1 N N N N N N -12.923 26.712 35.044 1.931 1.920 -0.279 H1 U3I 30 U3I H2 H2 H 0 1 N N N N N N -16.653 28.013 36.736 -0.043 -1.780 0.569 H2 U3I 31 U3I H3 H3 H 0 1 N N N N N N -19.276 23.264 33.534 -5.286 1.430 1.444 H3 U3I 32 U3I H4 H4 H 0 1 N N N N N N -19.259 22.516 35.854 -6.738 1.187 -0.525 H4 U3I 33 U3I H5 H5 H 0 1 N N N N N N -19.968 24.066 36.419 -5.247 2.042 -0.994 H5 U3I 34 U3I H6 H6 H 0 1 N N N N N N -21.739 22.394 36.415 -5.876 0.221 -2.614 H6 U3I 35 U3I H7 H7 H 0 1 N N N N N N -21.335 21.893 34.738 -4.284 -0.046 -1.863 H7 U3I 36 U3I H8 H8 H 0 1 N N N N N N -12.490 27.910 37.754 3.323 1.135 0.234 H8 U3I 37 U3I H9 H9 H 0 1 N N N N N N -13.554 30.375 38.945 4.636 -0.527 1.451 H9 U3I 38 U3I H10 H10 H 0 1 N N N N N N -13.644 27.950 39.965 3.727 -0.727 -2.150 H10 U3I 39 U3I H11 H11 H 0 1 N N N N N N -15.127 28.611 39.197 2.630 0.675 -2.131 H11 U3I 40 U3I H12 H12 H 0 1 N N N N N N -14.576 26.947 38.802 4.386 0.916 -1.967 H12 U3I 41 U3I H13 H13 H 0 1 N N N N N N -12.540 32.124 35.388 7.042 -0.393 1.555 H13 U3I 42 U3I H14 H14 H 0 1 N N N N N N -12.283 30.359 35.173 7.959 0.180 0.141 H14 U3I 43 U3I H15 H15 H 0 1 N N N N N N -10.127 31.401 35.631 7.301 -1.849 -1.116 H15 U3I 44 U3I H16 H16 H 0 1 N N N N N N -10.780 32.232 37.083 8.134 -2.287 0.396 H16 U3I 45 U3I H17 H17 H 0 1 N N N N N N -10.669 29.172 36.731 6.082 -3.664 0.027 H17 U3I 46 U3I H18 H18 H 0 1 N N N N N N -9.471 30.133 37.661 5.963 -2.674 1.502 H18 U3I 47 U3I H19 H19 H 0 1 N N N N N N -11.240 29.259 39.183 3.866 -2.526 0.211 H19 U3I 48 U3I H20 H20 H 0 1 N N N N N N -11.324 31.051 39.082 4.772 -1.990 -1.226 H20 U3I 49 U3I H21 H21 H 0 1 N N N N N N -13.847 32.811 37.666 5.942 1.749 1.323 H21 U3I 50 U3I H22 H22 H 0 1 N N N N N N -15.122 31.554 37.814 4.786 1.990 -0.009 H22 U3I 51 U3I H23 H23 H 0 1 N N N N N N -15.776 33.309 36.192 6.672 2.271 -1.595 H23 U3I 52 U3I H24 H24 H 0 1 N N N N N N -14.299 32.981 35.222 6.767 3.459 -0.272 H24 U3I 53 U3I H25 H25 H 0 1 N N N N N N -15.574 31.724 35.370 7.828 2.030 -0.263 H25 U3I 54 U3I H26 H26 H 0 1 N N N N N N -14.092 24.849 33.865 -0.227 3.091 -0.240 H26 U3I 55 U3I H27 H27 H 0 1 N N N N N N -18.838 26.761 35.102 -2.998 -1.260 -0.113 H27 U3I 56 U3I H28 H28 H 0 1 N N N N N N -18.555 25.691 36.517 -2.809 -0.961 1.639 H28 U3I 57 U3I H29 H29 H 0 1 N N N N N N -22.485 25.472 33.808 -6.180 -2.442 0.475 H29 U3I 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U3I O18 C17 DOUB N N 1 U3I O10 C9 DOUB N N 2 U3I C17 N16 SING N N 3 U3I C17 C12 SING N N 4 U3I C9 N8 SING N N 5 U3I C9 C5 SING N N 6 U3I N16 C15 SING N N 7 U3I C12 N8 SING N N 8 U3I C12 C13 SING N N 9 U3I C6 C5 DOUB Y N 10 U3I C6 C1 SING Y N 11 U3I N8 C7 SING N N 12 U3I C5 C4 SING Y N 13 U3I C15 O19 DOUB N N 14 U3I C15 C14 SING N N 15 U3I C1 C2 DOUB Y N 16 U3I C14 C13 SING N N 17 U3I C4 C7 SING N N 18 U3I C4 C3 DOUB Y N 19 U3I C29 C28 SING N N 20 U3I C24 C25 SING N N 21 U3I C24 N23 SING N N 22 U3I C2 C3 SING Y N 23 U3I C2 O11 SING N N 24 U3I C25 C26 SING N N 25 U3I O11 C20 SING N N 26 U3I N23 C28 SING N N 27 U3I N23 C21 SING N N 28 U3I C26 C27 SING N N 29 U3I C20 C21 SING N N 30 U3I C20 C22 SING N N 31 U3I C21 C27 SING N N 32 U3I C1 H1 SING N N 33 U3I C3 H2 SING N N 34 U3I C12 H3 SING N N 35 U3I C13 H4 SING N N 36 U3I C13 H5 SING N N 37 U3I C14 H6 SING N N 38 U3I C14 H7 SING N N 39 U3I C20 H8 SING N N 40 U3I C21 H9 SING N N 41 U3I C22 H10 SING N N 42 U3I C22 H11 SING N N 43 U3I C22 H12 SING N N 44 U3I C24 H13 SING N N 45 U3I C24 H14 SING N N 46 U3I C25 H15 SING N N 47 U3I C25 H16 SING N N 48 U3I C26 H17 SING N N 49 U3I C26 H18 SING N N 50 U3I C27 H19 SING N N 51 U3I C27 H20 SING N N 52 U3I C28 H21 SING N N 53 U3I C28 H22 SING N N 54 U3I C29 H23 SING N N 55 U3I C29 H24 SING N N 56 U3I C29 H25 SING N N 57 U3I C6 H26 SING N N 58 U3I C7 H27 SING N N 59 U3I C7 H28 SING N N 60 U3I N16 H29 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U3I SMILES ACDLabs 12.01 "CCN1CCCCC1C(C)Oc1cc2CN(C3CCC(=O)NC3=O)C(=O)c2cc1" U3I InChI InChI 1.06 "InChI=1S/C22H29N3O4/c1-3-24-11-5-4-6-18(24)14(2)29-16-7-8-17-15(12-16)13-25(22(17)28)19-9-10-20(26)23-21(19)27/h7-8,12,14,18-19H,3-6,9-11,13H2,1-2H3,(H,23,26,27)/t14-,18-,19+/m1/s1" U3I InChIKey InChI 1.06 FVZCFUKXGUUDBQ-ZMYBRWDISA-N U3I SMILES_CANONICAL CACTVS 3.385 "CCN1CCCC[C@@H]1[C@@H](C)Oc2ccc3C(=O)N(Cc3c2)[C@H]4CCC(=O)NC4=O" U3I SMILES CACTVS 3.385 "CCN1CCCC[CH]1[CH](C)Oc2ccc3C(=O)N(Cc3c2)[CH]4CCC(=O)NC4=O" U3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1CCCC[C@@H]1[C@@H](C)Oc2ccc3c(c2)CN(C3=O)[C@H]4CCC(=O)NC4=O" U3I SMILES "OpenEye OEToolkits" 2.0.7 "CCN1CCCCC1C(C)Oc2ccc3c(c2)CN(C3=O)C4CCC(=O)NC4=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U3I "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione" U3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[6-[(1~{R})-1-[(2~{R})-1-ethylpiperidin-2-yl]ethoxy]-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U3I "Create component" 2023-08-29 RCSB U3I "Initial release" 2024-07-10 RCSB #