data_U3P # _chem_comp.id U3P _chem_comp.name "3'-URIDINEMONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H13 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U3P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4RSK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U3P N1 N1 N 0 1 N N N -17.478 40.551 26.994 -0.192 0.501 -2.238 N1 U3P 1 U3P C2 C2 C 0 1 N N N -16.466 39.667 27.305 0.193 -0.702 -2.698 C2 U3P 2 U3P N3 N3 N 0 1 N N N -16.488 38.479 26.618 0.002 -1.044 -3.986 N3 U3P 3 U3P C4 C4 C 0 1 N N N -17.388 38.109 25.633 -0.572 -0.175 -4.842 C4 U3P 4 U3P C5 C5 C 0 1 N N N -18.428 39.083 25.380 -0.978 1.097 -4.371 C5 U3P 5 U3P C6 C6 C 0 1 N N N -18.440 40.246 26.059 -0.779 1.411 -3.074 C6 U3P 6 U3P O2 O2 O 0 1 N N N -15.616 39.894 28.138 0.712 -1.496 -1.938 O2 U3P 7 U3P O4 O4 O 0 1 N N N -17.260 37.022 25.057 -0.741 -0.481 -6.008 O4 U3P 8 U3P P P P 0 1 N N N -15.883 45.662 25.882 -0.739 -0.117 3.654 P U3P 9 U3P O1P O1P O 0 1 N N N -15.657 44.948 24.601 -1.508 0.765 4.759 O1P U3P 10 U3P O2P O2P O 0 1 N N N -14.821 45.280 26.837 0.558 -0.570 4.200 O2P U3P 11 U3P O3P O3P O 0 1 N N N -16.066 47.129 25.742 -1.636 -1.398 3.271 O3P U3P 12 U3P "O5'" O5* O 0 1 N N N -21.453 43.444 26.672 3.906 0.322 0.846 "O5'" U3P 13 U3P "C5'" C5* C 0 1 N N N -20.182 43.731 26.089 2.696 -0.294 1.289 "C5'" U3P 14 U3P "C4'" C4* C 0 1 N N R -19.013 43.595 27.075 1.506 0.598 0.931 "C4'" U3P 15 U3P "O4'" O4* O 0 1 N N N -18.956 42.255 27.655 1.425 0.755 -0.495 "O4'" U3P 16 U3P "C3'" C3* C 0 1 N N S -17.648 43.780 26.407 0.195 -0.062 1.398 "C3'" U3P 17 U3P "O3'" O3* O 0 1 N N N -17.288 45.161 26.459 -0.486 0.772 2.336 "O3'" U3P 18 U3P "C2'" C2* C 0 1 N N R -16.695 42.920 27.249 -0.636 -0.208 0.097 "C2'" U3P 19 U3P "O2'" O2* O 0 1 N N N -16.211 43.596 28.406 -2.009 0.108 0.332 "O2'" U3P 20 U3P "C1'" C1* C 0 1 N N R -17.608 41.807 27.731 0.023 0.842 -0.830 "C1'" U3P 21 U3P HN3 HN3 H 0 1 N N N -15.763 37.804 26.863 0.282 -1.917 -4.301 HN3 U3P 22 U3P H5 H5 H 0 1 N N N -19.237 38.934 24.645 -1.441 1.806 -5.042 H5 U3P 23 U3P H6 H6 H 0 1 N N N -19.252 40.961 25.845 -1.083 2.377 -2.697 H6 U3P 24 U3P HOP1 1HOP H 0 0 N N N -16.339 45.193 23.987 -1.640 0.196 5.529 HOP1 U3P 25 U3P HOP3 3HOP H 0 0 N N N -16.210 47.586 26.562 -2.471 -1.060 2.920 HOP3 U3P 26 U3P "HO5'" *HO5 H 0 0 N N N -22.176 43.528 26.061 4.628 -0.271 1.091 "HO5'" U3P 27 U3P "H5'1" 1H5* H 0 0 N N N -20.011 43.101 25.184 2.582 -1.263 0.802 "H5'1" U3P 28 U3P "H5'2" 2H5* H 0 0 N N N -20.183 44.740 25.614 2.733 -0.433 2.370 "H5'2" U3P 29 U3P "H4'" H4* H 0 1 N N N -19.202 44.386 27.837 1.619 1.573 1.405 "H4'" U3P 30 U3P "H3'" H3* H 0 1 N N N -17.628 43.479 25.333 0.396 -1.040 1.835 "H3'" U3P 31 U3P "H2'" H2* H 0 1 N N N -15.799 42.614 26.659 -0.536 -1.211 -0.318 "H2'" U3P 32 U3P "HO2'" *HO2 H 0 0 N N N -15.621 43.063 28.927 -2.452 0.090 -0.526 "HO2'" U3P 33 U3P "H1'" H1* H 0 1 N N N -17.300 41.580 28.778 -0.360 1.839 -0.614 "H1'" U3P 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U3P N1 C2 SING N N 1 U3P N1 C6 SING N N 2 U3P N1 "C1'" SING N N 3 U3P C2 N3 SING N N 4 U3P C2 O2 DOUB N N 5 U3P N3 C4 SING N N 6 U3P N3 HN3 SING N N 7 U3P C4 C5 SING N N 8 U3P C4 O4 DOUB N N 9 U3P C5 C6 DOUB N N 10 U3P C5 H5 SING N N 11 U3P C6 H6 SING N N 12 U3P P O1P SING N N 13 U3P P O2P DOUB N N 14 U3P P O3P SING N N 15 U3P P "O3'" SING N N 16 U3P O1P HOP1 SING N N 17 U3P O3P HOP3 SING N N 18 U3P "O5'" "C5'" SING N N 19 U3P "O5'" "HO5'" SING N N 20 U3P "C5'" "C4'" SING N N 21 U3P "C5'" "H5'1" SING N N 22 U3P "C5'" "H5'2" SING N N 23 U3P "C4'" "O4'" SING N N 24 U3P "C4'" "C3'" SING N N 25 U3P "C4'" "H4'" SING N N 26 U3P "O4'" "C1'" SING N N 27 U3P "C3'" "O3'" SING N N 28 U3P "C3'" "C2'" SING N N 29 U3P "C3'" "H3'" SING N N 30 U3P "C2'" "O2'" SING N N 31 U3P "C2'" "C1'" SING N N 32 U3P "C2'" "H2'" SING N N 33 U3P "O2'" "HO2'" SING N N 34 U3P "C1'" "H1'" SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U3P SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1)C2OC(C(OP(=O)(O)O)C2O)CO" U3P SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)N2C=CC(=O)NC2=O" U3P SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)N2C=CC(=O)NC2=O" U3P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)OP(=O)(O)O)O" U3P SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)OP(=O)(O)O)O" U3P InChI InChI 1.03 "InChI=1S/C9H13N2O9P/c12-3-4-7(20-21(16,17)18)6(14)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" U3P InChIKey InChI 1.03 FOGRQMPFHUHIGU-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U3P "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-uridylic acid ; U3P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U3P "Create component" 1999-07-08 RCSB U3P "Modify descriptor" 2011-06-04 RCSB #