data_U4X # _chem_comp.id U4X _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-[5-(phenanthren-9-ylmethoxy)pentyl]piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H33 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-25 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 439.544 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U4X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U4X C3 C1 C 0 1 N N S -12.613 -31.899 95.388 -6.411 -1.779 -0.669 C3 U4X 1 U4X C2 C2 C 0 1 N N N -13.767 -32.822 95.077 -5.294 -0.791 -1.010 C2 U4X 2 U4X C26 C3 C 0 1 N N N -17.294 -35.223 94.967 -1.593 1.282 -0.255 C26 U4X 3 U4X C27 C4 C 0 1 N N N -17.378 -36.541 95.734 -0.296 0.491 -0.075 C27 U4X 4 U4X C28 C5 C 0 1 N N N -18.682 -37.248 95.541 0.901 1.417 -0.304 C28 U4X 5 U4X N1 N1 N 0 1 N N N -14.999 -32.194 95.605 -5.237 0.259 0.014 N1 U4X 6 U4X C30 C6 C 0 1 N N N -19.603 -39.418 96.026 3.298 1.454 -0.330 C30 U4X 7 U4X C25 C7 C 0 1 N N N -16.312 -34.353 95.722 -2.790 0.357 -0.026 C25 U4X 8 U4X C12 C8 C 0 1 N N N -16.189 -32.938 95.116 -4.088 1.147 -0.205 C12 U4X 9 U4X C4 C9 C 0 1 N N R -12.519 -31.736 96.893 -7.745 -1.031 -0.604 C4 U4X 10 U4X C5 C10 C 0 1 N N R -13.781 -31.138 97.424 -7.643 0.088 0.437 C5 U4X 11 U4X C6 C11 C 0 1 N N R -14.970 -32.033 97.067 -6.490 1.022 0.063 C6 U4X 12 U4X C7 C12 C 0 1 N N N -16.261 -31.452 97.564 -6.372 2.131 1.111 C7 U4X 13 U4X O3 O1 O 0 1 N N N -11.402 -32.403 94.855 -6.480 -2.790 -1.677 O3 U4X 14 U4X O4 O2 O 0 1 N N N -11.446 -30.874 97.275 -8.784 -1.938 -0.229 O4 U4X 15 U4X O5 O3 O 0 1 N N N -13.690 -31.016 98.807 -8.866 0.827 0.463 O5 U4X 16 U4X O7 O4 O 0 1 N N N -16.593 -30.207 96.967 -6.194 1.548 2.403 O7 U4X 17 U4X O29 O5 O 0 1 N N N -18.439 -38.580 96.067 2.113 0.678 -0.137 O29 U4X 18 U4X C42 C13 C 0 1 Y N N -20.660 -38.791 96.918 4.509 0.579 -0.130 C42 U4X 19 U4X C41 C14 C 0 1 Y N N -20.272 -38.435 98.238 4.339 -0.721 0.182 C41 U4X 20 U4X C43 C15 C 0 1 Y N N -22.062 -38.551 96.381 5.799 1.140 -0.278 C43 U4X 21 U4X C58 C16 C 0 1 Y N N -22.484 -38.909 95.079 5.965 2.493 -0.607 C58 U4X 22 U4X C59 C17 C 0 1 Y N N -23.811 -38.663 94.660 7.221 3.007 -0.744 C59 U4X 23 U4X C60 C18 C 0 1 Y N N -24.752 -38.050 95.513 8.343 2.208 -0.562 C60 U4X 24 U4X C61 C19 C 0 1 Y N N -24.383 -37.678 96.815 8.215 0.886 -0.241 C61 U4X 25 U4X C44 C20 C 0 1 Y N N -23.067 -37.907 97.289 6.943 0.331 -0.093 C44 U4X 26 U4X C45 C21 C 0 1 Y N N -22.607 -37.557 98.691 6.758 -1.082 0.251 C45 U4X 27 U4X C46 C22 C 0 1 Y N N -21.184 -37.836 99.122 5.443 -1.583 0.380 C46 U4X 28 U4X C55 C23 C 0 1 Y N N -23.478 -36.957 99.627 7.846 -1.934 0.447 C55 U4X 29 U4X C54 C24 C 0 1 Y N N -23.025 -36.627 100.909 7.631 -3.244 0.766 C54 U4X 30 U4X C53 C25 C 0 1 Y N N -21.704 -36.902 101.292 6.339 -3.740 0.898 C53 U4X 31 U4X C52 C26 C 0 1 Y N N -20.802 -37.508 100.412 5.256 -2.934 0.704 C52 U4X 32 U4X H1 H1 H 0 1 N N N -12.829 -30.914 94.947 -6.206 -2.241 0.297 H1 U4X 33 U4X H2 H2 H 0 1 N N N -13.853 -32.961 93.989 -4.340 -1.319 -1.043 H2 U4X 34 U4X H3 H3 H 0 1 N N N -13.607 -33.798 95.559 -5.493 -0.340 -1.982 H3 U4X 35 U4X H4 H4 H 0 1 N N N -18.282 -34.740 94.931 -1.623 2.100 0.465 H4 U4X 36 U4X H5 H5 H 0 1 N N N -16.935 -35.401 93.942 -1.635 1.687 -1.266 H5 U4X 37 U4X H6 H6 H 0 1 N N N -16.568 -37.200 95.388 -0.254 0.087 0.936 H6 U4X 38 U4X H7 H7 H 0 1 N N N -17.248 -36.331 96.806 -0.266 -0.326 -0.795 H7 U4X 39 U4X H8 H8 H 0 1 N N N -19.485 -36.747 96.101 0.859 1.821 -1.315 H8 U4X 40 U4X H9 H9 H 0 1 N N N -18.950 -37.291 94.475 0.871 2.234 0.416 H9 U4X 41 U4X H11 H11 H 0 1 N N N -19.978 -39.487 94.994 3.306 1.859 -1.341 H11 U4X 42 U4X H12 H12 H 0 1 N N N -19.353 -40.424 96.393 3.318 2.272 0.390 H12 U4X 43 U4X H13 H13 H 0 1 N N N -16.650 -34.262 96.765 -2.760 -0.461 -0.746 H13 U4X 44 U4X H14 H14 H 0 1 N N N -15.323 -34.834 95.698 -2.748 -0.048 0.985 H14 U4X 45 U4X H15 H15 H 0 1 N N N -17.091 -32.366 95.378 -4.129 1.552 -1.217 H15 U4X 46 U4X H16 H16 H 0 1 N N N -16.118 -33.031 94.022 -4.117 1.965 0.515 H16 U4X 47 U4X H17 H17 H 0 1 N N N -12.378 -32.729 97.345 -7.970 -0.602 -1.580 H17 U4X 48 U4X H18 H18 H 0 1 N N N -13.933 -30.152 96.960 -7.458 -0.345 1.420 H18 U4X 49 U4X H19 H19 H 0 1 N N N -14.819 -33.016 97.537 -6.684 1.465 -0.914 H19 U4X 50 U4X H20 H20 H 0 1 N N N -16.180 -31.305 98.651 -5.515 2.762 0.876 H20 U4X 51 U4X H21 H21 H 0 1 N N N -17.069 -32.167 97.349 -7.280 2.734 1.106 H21 U4X 52 U4X H22 H22 H 0 1 N N N -10.692 -31.807 95.063 -5.667 -3.305 -1.773 H22 U4X 53 U4X H23 H23 H 0 1 N N N -11.421 -30.799 98.222 -8.901 -2.676 -0.843 H23 U4X 54 U4X H24 H24 H 0 1 N N N -14.492 -30.636 99.145 -9.642 0.296 0.691 H24 U4X 55 U4X H25 H25 H 0 1 N N N -17.417 -29.894 97.323 -6.112 2.194 3.118 H25 U4X 56 U4X H26 H26 H 0 1 N N N -19.261 -38.628 98.566 3.338 -1.114 0.282 H26 U4X 57 U4X H27 H27 H 0 1 N N N -21.786 -39.374 94.399 5.102 3.125 -0.752 H27 U4X 58 U4X H28 H28 H 0 1 N N N -24.111 -38.951 93.663 7.345 4.049 -0.997 H28 U4X 59 U4X H29 H29 H 0 1 N N N -25.757 -37.867 95.164 9.328 2.636 -0.676 H29 U4X 60 U4X H30 H30 H 0 1 N N N -25.110 -37.212 97.463 9.094 0.274 -0.102 H30 U4X 61 U4X H31 H31 H 0 1 N N N -24.502 -36.751 99.351 8.854 -1.559 0.346 H31 U4X 62 U4X H32 H32 H 0 1 N N N -23.698 -36.156 101.610 8.473 -3.903 0.917 H32 U4X 63 U4X H33 H33 H 0 1 N N N -21.377 -36.640 102.287 6.191 -4.780 1.151 H33 U4X 64 U4X H34 H34 H 0 1 N N N -19.796 -37.723 100.742 4.258 -3.333 0.807 H34 U4X 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U4X C59 C58 DOUB Y N 1 U4X C59 C60 SING Y N 2 U4X O3 C3 SING N N 3 U4X C26 C25 SING N N 4 U4X C26 C27 SING N N 5 U4X C2 C3 SING N N 6 U4X C2 N1 SING N N 7 U4X C58 C43 SING Y N 8 U4X C12 N1 SING N N 9 U4X C12 C25 SING N N 10 U4X C3 C4 SING N N 11 U4X C60 C61 DOUB Y N 12 U4X C28 C27 SING N N 13 U4X C28 O29 SING N N 14 U4X N1 C6 SING N N 15 U4X C30 O29 SING N N 16 U4X C30 C42 SING N N 17 U4X C43 C42 SING Y N 18 U4X C43 C44 DOUB Y N 19 U4X C61 C44 SING Y N 20 U4X C4 O4 SING N N 21 U4X C4 C5 SING N N 22 U4X C42 C41 DOUB Y N 23 U4X O7 C7 SING N N 24 U4X C6 C5 SING N N 25 U4X C6 C7 SING N N 26 U4X C44 C45 SING Y N 27 U4X C5 O5 SING N N 28 U4X C41 C46 SING Y N 29 U4X C45 C46 DOUB Y N 30 U4X C45 C55 SING Y N 31 U4X C46 C52 SING Y N 32 U4X C55 C54 DOUB Y N 33 U4X C52 C53 DOUB Y N 34 U4X C54 C53 SING Y N 35 U4X C3 H1 SING N N 36 U4X C2 H2 SING N N 37 U4X C2 H3 SING N N 38 U4X C26 H4 SING N N 39 U4X C26 H5 SING N N 40 U4X C27 H6 SING N N 41 U4X C27 H7 SING N N 42 U4X C28 H8 SING N N 43 U4X C28 H9 SING N N 44 U4X C30 H11 SING N N 45 U4X C30 H12 SING N N 46 U4X C25 H13 SING N N 47 U4X C25 H14 SING N N 48 U4X C12 H15 SING N N 49 U4X C12 H16 SING N N 50 U4X C4 H17 SING N N 51 U4X C5 H18 SING N N 52 U4X C6 H19 SING N N 53 U4X C7 H20 SING N N 54 U4X C7 H21 SING N N 55 U4X O3 H22 SING N N 56 U4X O4 H23 SING N N 57 U4X O5 H24 SING N N 58 U4X O7 H25 SING N N 59 U4X C41 H26 SING N N 60 U4X C58 H27 SING N N 61 U4X C59 H28 SING N N 62 U4X C60 H29 SING N N 63 U4X C61 H30 SING N N 64 U4X C55 H31 SING N N 65 U4X C54 H32 SING N N 66 U4X C53 H33 SING N N 67 U4X C52 H34 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U4X InChI InChI 1.06 "InChI=1S/C26H33NO5/c28-16-23-25(30)26(31)24(29)15-27(23)12-6-1-7-13-32-17-19-14-18-8-2-3-9-20(18)22-11-5-4-10-21(19)22/h2-5,8-11,14,23-26,28-31H,1,6-7,12-13,15-17H2/t23-,24+,25-,26-/m1/s1" U4X InChIKey InChI 1.06 ULWVXKHMHFFLQL-XDZVQPMWSA-N U4X SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCOCc2cc3ccccc3c4ccccc24" U4X SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCOCc2cc3ccccc3c4ccccc24" U4X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(c3c2cccc3)COCCCCCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O" U4X SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(c3c2cccc3)COCCCCCN4CC(C(C(C4CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id U4X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[5-(phenanthren-9-ylmethoxy)pentyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U4X "Create component" 2023-01-25 PDBE U4X "Initial release" 2023-09-13 RCSB #