data_U4Z
#
_chem_comp.id U4Z
_chem_comp.name gamma-Carotene
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H56"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "2-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E},19~{E})-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,3-trimethyl-cyclohexene"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-05-15
_chem_comp.pdbx_modified_date 2023-11-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 536.873
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code U4Z
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8IUG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U4Z CAB C1 C 0 1 N N N N N N 138.792 132.789 130.083 -12.834 0.953 0.831 CAB U4Z 1
U4Z CAC C2 C 0 1 N N N N N N 137.418 133.448 130.256 -14.253 0.401 0.679 CAC U4Z 2
U4Z CAD C3 C 0 1 N N N N N N 139.381 132.345 131.412 -11.882 0.173 -0.028 CAD U4Z 3
U4Z CAE C4 C 0 1 N N N N N N 137.489 134.567 131.286 -14.207 -1.120 0.866 CAE U4Z 4
U4Z CAF C5 C 0 1 N N N N N N 138.625 131.595 129.158 -12.813 2.423 0.407 CAF U4Z 5
U4Z CAG C6 C 0 1 N N N N N N 139.724 133.785 129.412 -12.401 0.845 2.295 CAG U4Z 6
U4Z CAH C7 C 0 1 N N N N N N 138.812 132.810 132.598 -12.156 -1.017 -0.534 CAH U4Z 7
U4Z CAI C8 C 0 1 N N N N N N 138.093 134.093 132.575 -13.458 -1.733 -0.319 CAI U4Z 8
U4Z CAJ C9 C 0 1 N N N N N N 140.516 131.462 131.330 -10.617 0.746 -0.314 CAJ U4Z 9
U4Z CAK C10 C 0 1 N N N N N N 138.864 132.143 133.946 -11.104 -1.694 -1.374 CAK U4Z 10
U4Z CAL C11 C 0 1 N N N N N N 141.448 131.208 132.292 -9.479 0.079 0.017 CAL U4Z 11
U4Z CAM C12 C 0 1 N N N N N N 142.485 130.282 132.254 -8.226 0.611 -0.333 CAM U4Z 12
U4Z CAN C13 C 0 1 N N N N N N 142.720 129.450 131.054 -8.144 1.920 -1.076 CAN U4Z 13
U4Z CAO C14 C 0 1 N N N N N N 143.333 130.088 133.357 -7.083 -0.058 -0.001 CAO U4Z 14
U4Z CAP C15 C 0 1 N N N N N N 144.368 129.187 133.530 -5.834 0.473 -0.350 CAP U4Z 15
U4Z CAQ C16 C 0 1 N N N N N N 145.096 129.029 134.695 -4.681 -0.202 -0.015 CAQ U4Z 16
U4Z CAR C17 C 0 1 N N N N N N 146.168 128.164 134.972 -3.434 0.327 -0.363 CAR U4Z 17
U4Z CAS C18 C 0 1 N N N N N N 160.292 124.639 144.129 13.431 -0.607 -0.507 CAS U4Z 18
U4Z CAT C19 C 0 1 N N N N N N 160.921 125.490 143.049 13.992 0.193 0.670 CAT U4Z 19
U4Z CAU C20 C 0 1 N N N N N N 146.675 127.297 133.886 -3.352 1.636 -1.106 CAU U4Z 20
U4Z CAV C21 C 0 1 N N N N N N 146.781 128.091 136.234 -2.280 -0.348 -0.028 CAV U4Z 21
U4Z CAW C22 C 0 1 N N N N N N 158.822 124.910 144.328 12.088 -1.178 -0.131 CAW U4Z 22
U4Z CAX C23 C 0 1 N N N N N N 162.388 125.247 142.885 15.336 0.764 0.295 CAX U4Z 23
U4Z CAY C24 C 0 1 N N N N N N 163.370 126.133 142.850 15.520 2.061 0.295 CAY U4Z 24
U4Z CAZ C25 C 0 1 N N N N N N 158.422 125.328 145.713 12.006 -2.486 0.612 CAZ U4Z 25
U4Z CBA C26 C 0 1 N N N N N N 157.963 124.778 143.323 10.969 -0.523 -0.456 CBA U4Z 26
U4Z CBB C27 C 0 1 N N N N N N 147.876 127.349 136.634 -1.033 0.181 -0.376 CBB U4Z 27
U4Z CBC C28 C 0 1 N N N N N N 163.134 127.610 142.919 14.370 2.985 0.602 CBC U4Z 28
U4Z CBD C29 C 0 1 N N N N N N 164.810 125.739 142.734 16.882 2.628 -0.013 CBD U4Z 29
U4Z CBE C30 C 0 1 N N N N N N 156.559 125.114 143.359 9.705 -1.059 -0.103 CBE U4Z 30
U4Z CBF C31 C 0 1 N N N N N N 155.643 125.070 142.325 8.568 -0.393 -0.434 CBF U4Z 31
U4Z CBG C32 C 0 1 N N N N N N 148.497 127.270 137.873 0.122 -0.495 -0.041 CBG U4Z 32
U4Z CBH C33 C 0 1 N N N N N N 154.300 125.490 142.316 7.315 -0.925 -0.084 CBH U4Z 33
U4Z CBI C34 C 0 1 N N N N N N 149.662 126.640 138.268 1.368 0.035 -0.389 CBI U4Z 34
U4Z CBJ C35 C 0 1 N N N N N N 153.505 125.504 141.157 6.172 -0.256 -0.416 CBJ U4Z 35
U4Z CBK C36 C 0 1 N N N N N N 153.694 125.937 143.590 7.233 -2.234 0.659 CBK U4Z 36
U4Z CBL C37 C 0 1 N N N N N N 150.252 126.599 139.544 2.522 -0.641 -0.054 CBL U4Z 37
U4Z CBM C38 C 0 1 N N N N N N 152.226 125.997 140.981 4.923 -0.786 -0.067 CBM U4Z 38
U4Z CBN C39 C 0 1 N N N N N N 151.514 126.037 139.796 3.770 -0.111 -0.402 CBN U4Z 39
U4Z CBO C40 C 0 1 N N N N N N 149.499 127.172 140.682 2.440 -1.950 0.689 CBO U4Z 40
U4Z H1 H1 H 0 1 N N N N N N 137.092 133.864 129.291 -14.901 0.844 1.436 H1 U4Z 41
U4Z H2 H2 H 0 1 N N N N N N 136.694 132.692 130.593 -14.633 0.637 -0.315 H2 U4Z 42
U4Z H4 H4 H 0 1 N N N N N N 138.104 135.385 130.883 -13.685 -1.360 1.793 H4 U4Z 43
U4Z H5 H5 H 0 1 N N N N N N 136.472 134.936 131.483 -15.222 -1.515 0.902 H5 U4Z 44
U4Z H6 H6 H 0 1 N N N N N N 137.953 130.860 129.625 -13.566 2.974 0.969 H6 U4Z 45
U4Z H7 H7 H 0 1 N N N N N N 138.195 131.929 128.202 -11.828 2.845 0.608 H7 U4Z 46
U4Z H8 H8 H 0 1 N N N N N N 139.606 131.131 128.977 -13.029 2.496 -0.659 H8 U4Z 47
U4Z H9 H9 H 0 1 N N N N N N 139.859 134.659 130.066 -12.421 -0.201 2.603 H9 U4Z 48
U4Z H10 H10 H 0 1 N N N N N N 140.699 133.309 129.230 -11.391 1.237 2.405 H10 U4Z 49
U4Z H11 H11 H 0 1 N N N N N N 139.288 134.107 128.455 -13.085 1.420 2.919 H11 U4Z 50
U4Z H13 H13 H 0 1 N N N N N N 138.804 134.866 132.901 -13.262 -2.786 -0.117 H13 U4Z 51
U4Z H14 H14 H 0 1 N N N N N N 137.274 134.016 133.305 -14.071 -1.647 -1.217 H14 U4Z 52
U4Z H15 H15 H 0 1 N N N N N N 140.644 130.938 130.394 -10.557 1.711 -0.795 H15 U4Z 53
U4Z H16 H16 H 0 1 N N N N N N 138.321 132.756 134.680 -10.423 -2.247 -0.727 H16 U4Z 54
U4Z H17 H17 H 0 1 N N N N N N 138.397 131.149 133.882 -11.581 -2.381 -2.072 H17 U4Z 55
U4Z H18 H18 H 0 1 N N N N N N 139.912 132.035 134.261 -10.544 -0.941 -1.930 H18 U4Z 56
U4Z H19 H19 H 0 1 N N N N N N 141.372 131.798 133.194 -9.538 -0.858 0.549 H19 U4Z 57
U4Z H20 H20 H 0 1 N N N N N N 143.581 128.789 131.229 -8.089 2.741 -0.361 H20 U4Z 58
U4Z H21 H21 H 0 1 N N N N N N 141.827 128.842 130.849 -7.254 1.926 -1.705 H21 U4Z 59
U4Z H22 H22 H 0 1 N N N N N N 142.927 130.101 130.192 -9.030 2.041 -1.699 H22 U4Z 60
U4Z H23 H23 H 0 1 N N N N N N 143.149 130.741 134.197 -7.142 -0.996 0.531 H23 U4Z 61
U4Z H24 H24 H 0 1 N N N N N N 144.628 128.559 132.691 -5.775 1.411 -0.882 H24 U4Z 62
U4Z H25 H25 H 0 1 N N N N N N 144.796 129.665 135.514 -4.740 -1.140 0.517 H25 U4Z 63
U4Z H27 H27 H 0 1 N N N N N N 160.417 123.581 143.856 13.319 0.047 -1.371 H27 U4Z 64
U4Z H28 H28 H 0 1 N N N N N N 160.814 124.837 145.077 14.115 -1.420 -0.752 H28 U4Z 65
U4Z H29 H29 H 0 1 N N N N N N 160.769 126.549 143.306 13.309 1.006 0.916 H29 U4Z 66
U4Z H30 H30 H 0 1 N N N N N N 160.421 125.269 142.094 14.104 -0.461 1.535 H30 U4Z 67
U4Z H31 H31 H 0 1 N N N N N N 147.508 126.686 134.263 -3.296 2.457 -0.391 H31 U4Z 68
U4Z H32 H32 H 0 1 N N N N N N 145.867 126.639 133.535 -2.461 1.642 -1.735 H32 U4Z 69
U4Z H33 H33 H 0 1 N N N N N N 147.027 127.922 133.052 -4.238 1.757 -1.729 H33 U4Z 70
U4Z H34 H34 H 0 1 N N N N N N 146.332 128.703 137.002 -2.338 -1.286 0.504 H34 U4Z 71
U4Z H35 H35 H 0 1 N N N N N N 162.684 124.214 142.782 16.147 0.103 0.025 H35 U4Z 72
U4Z H36 H36 H 0 1 N N N N N N 159.313 125.362 146.358 12.021 -2.297 1.685 H36 U4Z 73
U4Z H37 H37 H 0 1 N N N N N N 157.958 126.325 145.675 11.080 -2.997 0.347 H37 U4Z 74
U4Z H38 H38 H 0 1 N N N N N N 157.702 124.604 146.121 12.856 -3.112 0.341 H38 U4Z 75
U4Z H39 H39 H 0 1 N N N N N N 158.350 124.384 142.395 11.028 0.415 -0.989 H39 U4Z 76
U4Z H40 H40 H 0 1 N N N N N N 148.317 126.735 135.863 -0.974 1.119 -0.909 H40 U4Z 77
U4Z H41 H41 H 0 1 N N N N N N 162.055 127.806 143.002 14.264 3.087 1.682 H41 U4Z 78
U4Z H42 H42 H 0 1 N N N N N N 163.651 128.023 143.798 14.563 3.963 0.162 H42 U4Z 79
U4Z H43 H43 H 0 1 N N N N N N 163.524 128.086 142.007 13.451 2.573 0.184 H43 U4Z 80
U4Z H44 H44 H 0 1 N N N N N N 165.438 126.642 142.724 17.579 1.814 -0.208 H44 U4Z 81
U4Z H45 H45 H 0 1 N N N N N N 165.088 125.108 143.591 16.818 3.270 -0.891 H45 U4Z 82
U4Z H46 H46 H 0 1 N N N N N N 164.962 125.177 141.801 17.233 3.211 0.839 H46 U4Z 83
U4Z H47 H47 H 0 1 N N N N N N 156.176 125.441 144.315 9.647 -1.997 0.429 H47 U4Z 84
U4Z H48 H48 H 0 1 N N N N N N 156.008 124.657 141.396 8.627 0.545 -0.966 H48 U4Z 85
U4Z H49 H49 H 0 1 N N N N N N 147.980 127.791 138.665 0.063 -1.433 0.491 H49 U4Z 86
U4Z H51 H51 H 0 1 N N N N N N 150.191 126.107 137.492 1.427 0.973 -0.921 H51 U4Z 87
U4Z H52 H52 H 0 1 N N N N N N 153.958 125.067 140.279 6.231 0.682 -0.948 H52 U4Z 88
U4Z H53 H53 H 0 1 N N N N N N 154.440 125.867 144.396 7.248 -2.044 1.732 H53 U4Z 89
U4Z H54 H54 H 0 1 N N N N N N 153.359 126.980 143.490 6.307 -2.744 0.394 H54 U4Z 90
U4Z H55 H55 H 0 1 N N N N N N 152.833 125.296 143.831 8.083 -2.859 0.388 H55 U4Z 91
U4Z H56 H56 H 0 1 N N N N N N 151.733 126.391 141.857 4.864 -1.724 0.465 H56 U4Z 92
U4Z H57 H57 H 0 1 N N N N N N 151.995 125.572 138.948 3.829 0.827 -0.934 H57 U4Z 93
U4Z H58 H58 H 0 1 N N N N N N 150.089 127.064 141.604 2.385 -2.770 -0.026 H58 U4Z 94
U4Z H59 H59 H 0 1 N N N N N N 149.305 128.238 140.493 3.326 -2.070 1.312 H59 U4Z 95
U4Z H60 H60 H 0 1 N N N N N N 148.543 126.639 140.794 1.550 -1.955 1.318 H60 U4Z 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U4Z CAF CAB SING N N 1
U4Z CAG CAB SING N N 2
U4Z CAB CAC SING N N 3
U4Z CAB CAD SING N N 4
U4Z CAC CAE SING N N 5
U4Z CAN CAM SING N N 6
U4Z CAE CAI SING N N 7
U4Z CAJ CAD SING N N 8
U4Z CAJ CAL DOUB N E 9
U4Z CAD CAH DOUB N N 10
U4Z CAM CAL SING N N 11
U4Z CAM CAO DOUB N E 12
U4Z CAI CAH SING N N 13
U4Z CAH CAK SING N N 14
U4Z CAO CAP SING N N 15
U4Z CAP CAQ DOUB N E 16
U4Z CAU CAR SING N N 17
U4Z CAQ CAR SING N N 18
U4Z CAR CAV DOUB N E 19
U4Z CAV CBB SING N N 20
U4Z CBB CBG DOUB N E 21
U4Z CBG CBI SING N N 22
U4Z CBI CBL DOUB N E 23
U4Z CBL CBN SING N N 24
U4Z CBL CBO SING N N 25
U4Z CBN CBM DOUB N E 26
U4Z CBM CBJ SING N N 27
U4Z CBJ CBH DOUB N E 28
U4Z CBH CBF SING N N 29
U4Z CBH CBK SING N N 30
U4Z CBF CBE DOUB N E 31
U4Z CBD CAY SING N N 32
U4Z CAY CAX DOUB N N 33
U4Z CAY CBC SING N N 34
U4Z CAX CAT SING N N 35
U4Z CAT CAS SING N N 36
U4Z CBA CBE SING N N 37
U4Z CBA CAW DOUB N E 38
U4Z CAS CAW SING N N 39
U4Z CAW CAZ SING N N 40
U4Z CAC H1 SING N N 41
U4Z CAC H2 SING N N 42
U4Z CAE H4 SING N N 43
U4Z CAE H5 SING N N 44
U4Z CAF H6 SING N N 45
U4Z CAF H7 SING N N 46
U4Z CAF H8 SING N N 47
U4Z CAG H9 SING N N 48
U4Z CAG H10 SING N N 49
U4Z CAG H11 SING N N 50
U4Z CAI H13 SING N N 51
U4Z CAI H14 SING N N 52
U4Z CAJ H15 SING N N 53
U4Z CAK H16 SING N N 54
U4Z CAK H17 SING N N 55
U4Z CAK H18 SING N N 56
U4Z CAL H19 SING N N 57
U4Z CAN H20 SING N N 58
U4Z CAN H21 SING N N 59
U4Z CAN H22 SING N N 60
U4Z CAO H23 SING N N 61
U4Z CAP H24 SING N N 62
U4Z CAQ H25 SING N N 63
U4Z CAS H27 SING N N 64
U4Z CAS H28 SING N N 65
U4Z CAT H29 SING N N 66
U4Z CAT H30 SING N N 67
U4Z CAU H31 SING N N 68
U4Z CAU H32 SING N N 69
U4Z CAU H33 SING N N 70
U4Z CAV H34 SING N N 71
U4Z CAX H35 SING N N 72
U4Z CAZ H36 SING N N 73
U4Z CAZ H37 SING N N 74
U4Z CAZ H38 SING N N 75
U4Z CBA H39 SING N N 76
U4Z CBB H40 SING N N 77
U4Z CBC H41 SING N N 78
U4Z CBC H42 SING N N 79
U4Z CBC H43 SING N N 80
U4Z CBD H44 SING N N 81
U4Z CBD H45 SING N N 82
U4Z CBD H46 SING N N 83
U4Z CBE H47 SING N N 84
U4Z CBF H48 SING N N 85
U4Z CBG H49 SING N N 86
U4Z CBI H51 SING N N 87
U4Z CBJ H52 SING N N 88
U4Z CBK H53 SING N N 89
U4Z CBK H54 SING N N 90
U4Z CBK H55 SING N N 91
U4Z CBM H56 SING N N 92
U4Z CBN H57 SING N N 93
U4Z CBO H58 SING N N 94
U4Z CBO H59 SING N N 95
U4Z CBO H60 SING N N 96
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U4Z InChI InChI 1.06 "InChI=1S/C40H56/c1-32(2)18-13-21-35(5)24-15-26-36(6)25-14-22-33(3)19-11-12-20-34(4)23-16-27-37(7)29-30-39-38(8)28-17-31-40(39,9)10/h11-12,14-16,18-20,22-27,29-30H,13,17,21,28,31H2,1-10H3/b12-11+,22-14+,23-16+,26-15+,30-29+,33-19+,34-20+,35-24+,36-25+,37-27+"
U4Z InChIKey InChI 1.06 HRQKOYFGHJYEFS-BXOLYSJBSA-N
U4Z SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCC/C(C)=C/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C"
U4Z SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C"
U4Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCC=C(C)C)/C)/C"
U4Z SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C)C)C"
#
_pdbx_chem_comp_identifier.comp_id U4Z
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E},19~{E})-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,3-trimethyl-cyclohexene"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U4Z "Create component" 2023-05-15 PDBJ
U4Z "Initial release" 2023-11-22 RCSB
U4Z "Modify name" 2023-11-24 PDBJ
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id U4Z
_pdbx_chem_comp_synonyms.name "2-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E},19~{E})-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,3-trimethyl-cyclohexene"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#