data_U5U # _chem_comp.id U5U _chem_comp.name "~{N},~{N}-dimethyl-7-phenyl-3-thia-1$l^{4},5,6$l^{4}-triaza-2$l^{3}-palladatricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H15 N4 Pd S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-17 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.791 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8J8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U5U N16 N1 N 0 1 N N N N N N 5.169 11.336 9.407 ? ? ? N16 U5U 1 U5U C15 C1 C 0 1 N N N N N N 4.425 10.228 9.543 ? ? ? C15 U5U 2 U5U N12 N2 N 0 1 N N N N N N 4.870 9.210 10.095 ? ? ? N12 U5U 3 U5U S17 S1 S 0 1 N N N N N N 2.850 10.027 9.047 ? ? ? S17 U5U 4 U5U PD1 PD1 PD 0 0 N N N N N N 2.220 8.375 9.566 ? ? ? PD1 U5U 5 U5U N11 N3 N 0 1 N N N N N N 3.991 8.108 10.104 ? ? ? N11 U5U 6 U5U C9 C2 C 0 1 N N N N N N 4.435 6.873 10.480 ? ? ? C9 U5U 7 U5U C14 C3 C 0 1 Y N N N N N 3.230 5.990 10.638 ? ? ? C14 U5U 8 U5U C2 C4 C 0 1 Y N N N N N 3.118 4.719 11.222 ? ? ? C2 U5U 9 U5U N13 N4 N 0 1 Y N N N N N 2.055 6.675 10.250 ? ? ? N13 U5U 10 U5U C8 C5 C 0 1 Y N N N N N 0.857 6.048 10.384 ? ? ? C8 U5U 11 U5U C7 C6 C 0 1 Y N N N N N 0.742 4.766 10.915 ? ? ? C7 U5U 12 U5U C3 C7 C 0 1 Y N N N N N 1.885 4.113 11.334 ? ? ? C3 U5U 13 U5U C1 C8 C 0 1 Y N N N N N 5.886 6.469 10.762 ? ? ? C1 U5U 14 U5U C4 C9 C 0 1 Y N N N N N 6.955 7.360 10.655 ? ? ? C4 U5U 15 U5U C5 C10 C 0 1 Y N N N N N 8.268 6.965 10.902 ? ? ? C5 U5U 16 U5U C6 C11 C 0 1 Y N N N N N 8.579 5.672 11.264 ? ? ? C6 U5U 17 U5U C10 C12 C 0 1 Y N N N N N 7.545 4.773 11.378 ? ? ? C10 U5U 18 U5U C11 C13 C 0 1 Y N N N N N 6.244 5.168 11.130 ? ? ? C11 U5U 19 U5U C12 C14 C 0 1 N N N N N N 4.611 12.687 9.421 ? ? ? C12 U5U 20 U5U C13 C15 C 0 1 N N N N N N 6.624 11.260 9.267 ? ? ? C13 U5U 21 U5U H2 H2 H 0 1 N N N N N N 4.001 4.214 11.585 ? ? ? H2 U5U 22 U5U H3 H3 H 0 1 N N N N N N -0.038 6.563 10.067 ? ? ? H3 U5U 23 U5U H4 H4 H 0 1 N N N N N N -0.224 4.290 10.998 ? ? ? H4 U5U 24 U5U H5 H5 H 0 1 N N N N N N 1.812 3.120 11.753 ? ? ? H5 U5U 25 U5U H6 H6 H 0 1 N N N N N N 6.759 8.384 10.373 ? ? ? H6 U5U 26 U5U H7 H7 H 0 1 N N N N N N 9.062 7.691 10.807 ? ? ? H7 U5U 27 U5U H8 H8 H 0 1 N N N N N N 9.600 5.375 11.452 ? ? ? H8 U5U 28 U5U H9 H9 H 0 1 N N N N N N 7.751 3.752 11.663 ? ? ? H9 U5U 29 U5U H10 H10 H 0 1 N N N N N N 5.460 4.431 11.226 ? ? ? H10 U5U 30 U5U H11 H11 H 0 1 N N N N N N 3.518 12.632 9.530 ? ? ? H11 U5U 31 U5U H12 H12 H 0 1 N N N N N N 5.035 13.250 10.265 ? ? ? H12 U5U 32 U5U H13 H13 H 0 1 N N N N N N 4.860 13.196 8.478 ? ? ? H13 U5U 33 U5U H14 H14 H 0 1 N N N N N N 6.938 10.206 9.268 ? ? ? H14 U5U 34 U5U H15 H15 H 0 1 N N N N N N 6.926 11.732 8.320 ? ? ? H15 U5U 35 U5U H16 H16 H 0 1 N N N N N N 7.101 11.786 10.107 ? ? ? H16 U5U 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U5U S17 C15 SING N N 1 U5U S17 PD1 SING N N 2 U5U C13 N16 SING N N 3 U5U N16 C12 SING N N 4 U5U N16 C15 SING N N 5 U5U C15 N12 DOUB N N 6 U5U PD1 N11 SING N N 7 U5U PD1 N13 SING N N 8 U5U N12 N11 SING N N 9 U5U N11 C9 DOUB N N 10 U5U N13 C8 DOUB Y N 11 U5U N13 C14 SING Y N 12 U5U C8 C7 SING Y N 13 U5U C9 C14 SING N N 14 U5U C9 C1 SING N N 15 U5U C14 C2 DOUB Y N 16 U5U C4 C1 DOUB Y N 17 U5U C4 C5 SING Y N 18 U5U C1 C11 SING Y N 19 U5U C5 C6 DOUB Y N 20 U5U C7 C3 DOUB Y N 21 U5U C11 C10 DOUB Y N 22 U5U C2 C3 SING Y N 23 U5U C6 C10 SING Y N 24 U5U C2 H2 SING N N 25 U5U C8 H3 SING N N 26 U5U C7 H4 SING N N 27 U5U C3 H5 SING N N 28 U5U C4 H6 SING N N 29 U5U C5 H7 SING N N 30 U5U C6 H8 SING N N 31 U5U C10 H9 SING N N 32 U5U C11 H10 SING N N 33 U5U C12 H11 SING N N 34 U5U C12 H12 SING N N 35 U5U C12 H13 SING N N 36 U5U C13 H14 SING N N 37 U5U C13 H15 SING N N 38 U5U C13 H16 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U5U InChI InChI 1.06 "InChI=1S/C15H16N4S.Pd/c1-19(2)15(20)18-17-14(12-8-4-3-5-9-12)13-10-6-7-11-16-13;/h3-11H,1-2H3,(H,18,20);/q;+1/p-1/b17-14+;" U5U InChIKey InChI 1.06 KOLIMVKKIDYABX-KLSJZZFUSA-M U5U SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=NN=C(c1ccccc1)c2ccccn2)S[Pd]" U5U SMILES CACTVS 3.385 "CN(C)C(=NN=C(c1ccccc1)c2ccccn2)S[Pd]" U5U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1=N[N]2=C(C3=CC=CC=[N]3[Pd]2S1)c4ccccc4" U5U SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1=N[N]2=C(C3=CC=CC=[N]3[Pd]2S1)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id U5U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N},~{N}-dimethyl-7-phenyl-3-thia-1$l^{4},5,6$l^{4}-triaza-2$l^{3}-palladatricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U5U "Create component" 2023-05-17 PDBJ U5U "Initial release" 2024-05-01 RCSB #