data_U5W # _chem_comp.id U5W _chem_comp.name "1,25-Dihydroxy-16-ene-20-cyclopropyl-vitamin D3" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H42 O3" _chem_comp.mon_nstd_parent_comp_id VD3 _chem_comp.pdbx_synonyms "(1R,3S,5Z)-5-[(2E)-2-[(3aS,7aS)-7a-methyl-1-[1-(4-methyl-4-oxidanyl-pentyl)cyclopropyl]-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-22 _chem_comp.pdbx_modified_date 2022-02-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.631 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U5W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BNS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U5W C17 C1 C 0 1 N N N 1.545 39.609 38.348 5.196 -0.898 0.835 C1 U5W 1 U5W O O1 O 0 1 N N N -0.350 41.958 39.890 8.313 1.062 -1.248 O1 U5W 2 U5W C1 C2 C 0 1 N N S 2.054 41.012 38.678 6.104 -1.731 -0.047 C2 U5W 3 U5W O2 O2 O 0 1 N N N 3.980 28.734 34.407 -8.309 -1.253 -0.007 O2 U5W 4 U5W C2 C3 C 0 1 N N N 1.199 42.095 38.042 7.404 -0.952 -0.273 C3 U5W 5 U5W C3 C4 C 0 1 N N R -0.247 41.928 38.457 7.091 0.405 -0.905 C4 U5W 6 U5W C4 C5 C 0 1 N N N -0.790 40.619 37.915 6.308 1.271 0.087 C5 U5W 7 U5W C5 C6 C 0 1 N N N 0.043 39.429 38.306 5.045 0.528 0.476 C6 U5W 8 U5W C7 C7 C 0 1 N N N -0.502 38.222 38.518 3.843 1.139 0.494 C7 U5W 9 U5W C8 C8 C 0 1 N N N 0.219 37.037 38.835 2.645 0.387 0.876 C8 U5W 10 U5W C9 C9 C 0 1 N N N -0.408 35.860 38.963 1.457 0.991 0.894 C9 U5W 11 U5W C10 C10 C 0 1 N N N -1.883 35.681 38.743 1.269 2.457 0.523 C10 U5W 12 U5W C11 C11 C 0 1 N N N -2.187 34.549 37.756 0.168 2.621 -0.523 C11 U5W 13 U5W C12 C12 C 0 1 N N N -1.322 33.314 37.995 -1.106 1.841 -0.148 C12 U5W 14 U5W C13 C13 C 0 1 N N S 0.179 33.628 38.051 -0.717 0.403 0.023 C13 U5W 15 U5W C21 C14 C 0 1 N N N 0.646 34.337 36.764 0.170 0.029 -1.166 C14 U5W 16 U5W C14 C15 C 0 1 N N S 0.286 34.557 39.284 0.189 0.282 1.275 C15 U5W 17 U5W C15 C16 C 0 1 N N N 1.770 34.486 39.658 0.233 -1.245 1.361 C16 U5W 18 U5W C16 C17 C 0 1 N N N 2.097 33.076 39.259 -1.171 -1.641 0.913 C17 U5W 19 U5W C28 C18 C 0 1 N N N 1.184 32.562 38.441 -1.709 -0.684 0.185 C18 U5W 20 U5W C27 C19 C 0 1 N N N 1.234 31.090 38.034 -3.098 -0.701 -0.398 C19 U5W 21 U5W C6 C20 C 0 1 N N N 1.081 30.890 36.505 -4.187 -0.068 0.471 C20 U5W 22 U5W C19 C21 C 0 1 N N N 2.245 39.000 37.136 4.558 -1.426 1.879 C U5W 23 U5W O1 O3 O 0 1 N N N 3.399 41.158 38.224 5.465 -1.978 -1.300 O U5W 24 U5W C26 C22 C 0 1 N N N 2.451 30.756 35.841 -5.552 -0.279 -0.188 C21 U5W 25 U5W C18 C23 C 0 1 N N N 2.342 30.487 34.341 -6.640 0.353 0.682 C22 U5W 26 U5W C20 C24 C 0 1 N N N 3.615 29.934 33.699 -8.005 0.142 0.023 C23 U5W 27 U5W C22 C25 C 0 1 N N N 3.388 29.563 32.243 -7.972 0.688 -1.405 C24 U5W 28 U5W C23 C26 C 0 1 N N N 4.772 30.912 33.830 -9.078 0.881 0.826 C25 U5W 29 U5W C24 C27 C 0 1 N N N 0.556 30.085 38.933 -3.489 -1.905 -1.257 C26 U5W 30 U5W C25 C28 C 0 1 N N N 2.043 30.082 38.812 -3.229 -0.549 -1.915 C27 U5W 31 U5W HO H2 H 0 1 N N N -0.007 42.782 40.215 8.191 1.931 -1.655 H2 U5W 32 U5W H11 H3 H 0 1 N N N 2.019 41.141 39.770 6.325 -2.678 0.446 H3 U5W 33 U5W H4 H4 H 0 1 N N N 4.128 28.939 35.323 -8.347 -1.667 0.866 H4 U5W 34 U5W H21 H5 H 0 1 N N N 1.274 42.021 36.947 7.907 -0.800 0.682 H5 U5W 35 U5W H22 H6 H 0 1 N N N 1.559 43.082 38.369 8.055 -1.520 -0.938 H6 U5W 36 U5W H3 H7 H 0 1 N N N -0.833 42.754 38.027 6.494 0.256 -1.805 H7 U5W 37 U5W H41 H8 H 0 1 N N N -0.820 40.680 36.817 6.915 1.454 0.974 H8 U5W 38 U5W H42 H9 H 0 1 N N N -1.809 40.475 38.302 6.046 2.220 -0.382 H9 U5W 39 U5W H7 H10 H 0 1 N N N -1.576 38.143 38.442 3.763 2.182 0.227 H10 U5W 40 U5W H8 H11 H 0 1 N N N 1.289 37.087 38.975 2.725 -0.656 1.143 H11 U5W 41 U5W H101 H12 H 0 0 N N N -2.298 36.619 38.346 1.001 3.021 1.416 H12 U5W 42 U5W H102 H13 H 0 0 N N N -2.359 35.448 39.707 2.204 2.848 0.121 H13 U5W 43 U5W H111 H14 H 0 0 N N N -2.005 34.914 36.734 -0.079 3.679 -0.614 H14 U5W 44 U5W H112 H15 H 0 0 N N N -3.244 34.264 37.861 0.535 2.260 -1.483 H15 U5W 45 U5W H121 H16 H 0 0 N N N -1.620 32.859 38.951 -1.516 2.227 0.785 H16 U5W 46 U5W H122 H17 H 0 0 N N N -1.499 32.600 37.178 -1.844 1.933 -0.945 H17 U5W 47 U5W H181 H18 H 0 0 N N N 1.723 34.549 36.832 1.059 0.658 -1.168 H18 U5W 48 U5W H182 H19 H 0 0 N N N 0.454 33.687 35.897 0.465 -1.017 -1.085 H19 U5W 49 U5W H183 H20 H 0 0 N N N 0.093 35.280 36.644 -0.384 0.179 -2.093 H20 U5W 50 U5W H14 H21 H 0 1 N N N -0.277 34.076 40.098 -0.271 0.733 2.154 H21 U5W 51 U5W H151 H22 H 0 0 N N N 1.924 34.647 40.735 0.985 -1.650 0.683 H22 U5W 52 U5W H152 H23 H 0 0 N N N 2.366 35.215 39.089 0.422 -1.570 2.384 H23 U5W 53 U5W H161 H24 H 0 0 N N N 2.972 32.541 39.597 -1.659 -2.571 1.164 H24 U5W 54 U5W H221 H27 H 0 0 N N N 0.555 31.757 36.078 -4.182 -0.536 1.456 H27 U5W 55 U5W H222 H28 H 0 0 N N N 0.497 29.977 36.316 -3.994 1.000 0.575 H28 U5W 56 U5W H191 H29 H 0 0 N N N 3.009 39.559 36.616 4.683 -2.473 2.115 H29 U5W 57 U5W H192 H30 H 0 0 N N N 1.976 38.010 36.798 3.917 -0.808 2.490 H30 U5W 58 U5W H32 H32 H 0 1 N N N 3.941 40.484 38.617 4.626 -2.454 -1.227 H32 U5W 59 U5W H231 H33 H 0 0 N N N 2.993 29.922 36.312 -5.556 0.188 -1.172 H33 U5W 60 U5W H232 H34 H 0 0 N N N 3.011 31.690 35.993 -5.744 -1.347 -0.291 H34 U5W 61 U5W H241 H35 H 0 0 N N N 2.088 31.433 33.840 -6.636 -0.114 1.667 H35 U5W 62 U5W H242 H36 H 0 0 N N N 1.533 29.759 34.181 -6.448 1.421 0.786 H36 U5W 63 U5W H261 H37 H 0 0 N N N 2.548 28.856 32.171 -7.740 1.753 -1.382 H37 U5W 64 U5W H262 H38 H 0 0 N N N 3.154 30.470 31.666 -7.207 0.163 -1.977 H38 U5W 65 U5W H263 H39 H 0 0 N N N 4.297 29.095 31.838 -8.944 0.538 -1.875 H39 U5W 66 U5W H273 H40 H 0 0 N N N 4.919 31.167 34.890 -8.847 1.945 0.850 H40 U5W 67 U5W H271 H41 H 0 0 N N N 5.688 30.451 33.433 -10.051 0.730 0.357 H41 U5W 68 U5W H272 H42 H 0 0 N N N 4.546 31.826 33.261 -9.102 0.491 1.844 H42 U5W 69 U5W H211 H43 H 0 0 N N N 0.082 30.417 39.868 -2.742 -2.686 -1.399 H43 U5W 70 U5W H212 H44 H 0 0 N N N -0.032 29.265 38.495 -4.523 -2.248 -1.201 H44 U5W 71 U5W H45 H45 H 0 1 N N N 2.549 29.260 38.285 -4.090 0.000 -2.294 H45 U5W 72 U5W H46 H46 H 0 1 N N N 2.663 30.412 39.659 -2.310 -0.438 -2.491 H46 U5W 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U5W C22 C20 SING N N 1 U5W C20 C23 SING N N 2 U5W C20 C18 SING N N 3 U5W C20 O2 SING N N 4 U5W C18 C26 SING N N 5 U5W C26 C6 SING N N 6 U5W C6 C27 SING N N 7 U5W C21 C13 SING N N 8 U5W C19 C17 DOUB N N 9 U5W C11 C12 SING N N 10 U5W C11 C10 SING N N 11 U5W C4 C5 SING N N 12 U5W C4 C3 SING N N 13 U5W C12 C13 SING N N 14 U5W C27 C28 SING N N 15 U5W C27 C25 SING N N 16 U5W C27 C24 SING N N 17 U5W C2 C3 SING N N 18 U5W C2 C1 SING N N 19 U5W C13 C28 SING N N 20 U5W C13 C14 SING N N 21 U5W O1 C1 SING N N 22 U5W C5 C17 SING N N 23 U5W C5 C7 DOUB N Z 24 U5W C17 C1 SING N N 25 U5W C28 C16 DOUB N N 26 U5W C3 O SING N N 27 U5W C7 C8 SING N N 28 U5W C10 C9 SING N N 29 U5W C25 C24 SING N N 30 U5W C8 C9 DOUB N E 31 U5W C9 C14 SING N N 32 U5W C16 C15 SING N N 33 U5W C14 C15 SING N N 34 U5W O HO SING N N 35 U5W C1 H11 SING N N 36 U5W O2 H4 SING N N 37 U5W C2 H21 SING N N 38 U5W C2 H22 SING N N 39 U5W C3 H3 SING N N 40 U5W C4 H41 SING N N 41 U5W C4 H42 SING N N 42 U5W C7 H7 SING N N 43 U5W C8 H8 SING N N 44 U5W C10 H101 SING N N 45 U5W C10 H102 SING N N 46 U5W C11 H111 SING N N 47 U5W C11 H112 SING N N 48 U5W C12 H121 SING N N 49 U5W C12 H122 SING N N 50 U5W C21 H181 SING N N 51 U5W C21 H182 SING N N 52 U5W C21 H183 SING N N 53 U5W C14 H14 SING N N 54 U5W C15 H151 SING N N 55 U5W C15 H152 SING N N 56 U5W C16 H161 SING N N 57 U5W C6 H221 SING N N 58 U5W C6 H222 SING N N 59 U5W C19 H191 SING N N 60 U5W C19 H192 SING N N 61 U5W O1 H32 SING N N 62 U5W C26 H231 SING N N 63 U5W C26 H232 SING N N 64 U5W C18 H241 SING N N 65 U5W C18 H242 SING N N 66 U5W C22 H261 SING N N 67 U5W C22 H262 SING N N 68 U5W C22 H263 SING N N 69 U5W C23 H273 SING N N 70 U5W C23 H271 SING N N 71 U5W C23 H272 SING N N 72 U5W C24 H211 SING N N 73 U5W C24 H212 SING N N 74 U5W C25 H45 SING N N 75 U5W C25 H46 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U5W InChI InChI 1.03 "InChI=1S/C28H42O3/c1-19-21(17-22(29)18-24(19)30)9-8-20-7-5-13-27(4)23(20)10-11-25(27)28(15-16-28)14-6-12-26(2,3)31/h8-9,11,22-24,29-31H,1,5-7,10,12-18H2,2-4H3/b20-8+,21-9-/t22-,23+,24+,27+/m1/s1" U5W InChIKey InChI 1.03 WFPGMTGDYDCQLS-LMQQRSCXSA-N U5W SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)CCCC1(CC1)C2=CC[C@H]3C(\CCC[C@]23C)=C\C=C/4C[C@@H](O)C[C@H](O)C/4=C" U5W SMILES CACTVS 3.385 "CC(C)(O)CCCC1(CC1)C2=CC[CH]3C(CCC[C]23C)=CC=C4C[CH](O)C[CH](O)C4=C" U5W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]12CCC/C(=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)/[C@@H]1CC=C2C4(CC4)CCCC(C)(C)O" U5W SMILES "OpenEye OEToolkits" 2.0.7 "CC12CCCC(=CC=C3CC(CC(C3=C)O)O)C1CC=C2C4(CC4)CCCC(C)(C)O" # _pdbx_chem_comp_identifier.comp_id U5W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(3~{a}~{S},7~{a}~{S})-7~{a}-methyl-1-[1-(4-methyl-4-oxidanyl-pentyl)cyclopropyl]-3~{a},5,6,7-tetrahydro-3~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id U5W _pdbx_chem_comp_synonyms.name "(1R,3S,5Z)-5-[(2E)-2-[(3aS,7aS)-7a-methyl-1-[1-(4-methyl-4-oxidanyl-pentyl)cyclopropyl]-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U5W "Create component" 2021-01-22 PDBE U5W "Modify aromatic_flag" 2021-08-12 PDBE U5W "Initial release" 2022-03-02 RCSB ##