data_U6Y # _chem_comp.id U6Y _chem_comp.name "benzyl {(3S)-1-[(2S)-1-({(2S,3R)-4-(cyclopropylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-5-oxopyrrolidin-3-yl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H41 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-08 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 571.665 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U6Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DZB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U6Y C1 C1 C 0 1 N N N -20.724 -1.636 18.629 0.667 3.572 -3.169 C1 U6Y 1 U6Y C2 C2 C 0 1 N N N -19.674 -0.782 17.839 0.591 3.771 -1.654 C2 U6Y 2 U6Y C3 C3 C 0 1 N N N -20.097 -0.746 16.344 1.466 2.726 -0.959 C3 U6Y 3 U6Y C4 C4 C 0 1 N N S -19.176 0.107 15.508 0.872 1.334 -1.179 C4 U6Y 4 U6Y N1 N1 N 0 1 N N N -19.518 1.506 15.560 -0.436 1.252 -0.523 N1 U6Y 5 U6Y C5 C5 C 0 1 N N N -18.739 2.465 14.755 -0.640 1.454 0.790 C5 U6Y 6 U6Y C6 C6 C 0 1 N N N -19.340 3.889 15.006 -2.109 1.300 1.118 C6 U6Y 7 U6Y C7 C7 C 0 1 N N S -20.667 3.537 15.685 -2.815 1.387 -0.255 C7 U6Y 8 U6Y N2 N2 N 0 1 N N N -20.961 4.417 16.824 -3.955 0.468 -0.317 N2 U6Y 9 U6Y C8 C8 C 0 1 N N N -21.961 5.463 16.732 -5.162 0.862 0.134 C8 U6Y 10 U6Y O1 O1 O 0 1 N N N -22.003 6.291 17.870 -6.210 0.018 0.077 O1 U6Y 11 U6Y C9 C9 C 0 1 N N N -22.960 7.367 17.841 -7.480 0.509 0.580 C9 U6Y 12 U6Y C10 C10 C 0 1 Y N N -22.539 8.602 16.989 -8.527 -0.566 0.436 C10 U6Y 13 U6Y C11 C11 C 0 1 Y N N -23.326 9.797 17.073 -8.734 -1.470 1.461 C11 U6Y 14 U6Y C12 C12 C 0 1 Y N N -23.019 10.959 16.328 -9.694 -2.456 1.328 C12 U6Y 15 U6Y C13 C13 C 0 1 Y N N -21.918 10.954 15.481 -10.447 -2.537 0.171 C13 U6Y 16 U6Y C14 C14 C 0 1 Y N N -21.147 9.785 15.382 -10.239 -1.633 -0.853 C14 U6Y 17 U6Y C15 C15 C 0 1 Y N N -21.426 8.625 16.137 -9.284 -0.643 -0.718 C15 U6Y 18 U6Y O2 O2 O 0 1 N N N -22.725 5.577 15.785 -5.306 1.978 0.592 O2 U6Y 19 U6Y C16 C16 C 0 1 N N N -20.587 2.149 16.304 -1.692 0.945 -1.217 C16 U6Y 20 U6Y O3 O3 O 0 1 N N N -17.847 2.104 14.031 0.228 1.720 1.595 O3 U6Y 21 U6Y C17 C17 C 0 1 N N N -19.300 -0.343 14.081 1.793 0.295 -0.593 C17 U6Y 22 U6Y N3 N3 N 0 1 N N N -18.138 -0.967 13.526 3.058 0.184 -1.046 N3 U6Y 23 U6Y C18 C18 C 0 1 N N S -18.196 -1.541 12.195 3.919 -0.895 -0.557 C18 U6Y 24 U6Y C19 C19 C 0 1 N N R -17.896 -3.024 12.446 5.382 -0.454 -0.632 C19 U6Y 25 U6Y O4 O4 O 0 1 N N N -18.791 -3.418 13.468 5.720 -0.153 -1.987 O4 U6Y 26 U6Y C20 C20 C 0 1 N N N -18.361 -3.903 11.260 5.581 0.772 0.221 C20 U6Y 27 U6Y N4 N4 N 0 1 N N N -19.558 -4.753 11.466 5.421 0.698 1.557 N4 U6Y 28 U6Y C21 C21 C 0 1 N N N -19.994 -5.699 10.417 5.615 1.890 2.385 C21 U6Y 29 U6Y C22 C22 C 0 1 N N N -21.362 -6.333 10.598 4.890 1.940 3.732 C22 U6Y 30 U6Y C23 C23 C 0 1 N N N -21.170 -5.242 9.536 6.404 1.726 3.685 C23 U6Y 31 U6Y O5 O5 O 0 1 N N N -17.782 -3.906 10.209 5.886 1.826 -0.296 O5 U6Y 32 U6Y C24 C24 C 0 1 N N N -17.155 -0.954 11.284 3.716 -2.141 -1.422 C24 U6Y 33 U6Y C25 C25 C 0 1 N N S -17.462 0.549 11.049 4.521 -3.303 -0.839 C25 U6Y 34 U6Y C26 C26 C 0 1 N N N -18.732 0.789 10.287 4.447 -4.535 -1.771 C26 U6Y 35 U6Y C27 C27 C 0 1 N N N -18.432 1.809 9.193 4.404 -5.697 -0.755 C27 U6Y 36 U6Y N5 N5 N 0 1 N N N -16.900 1.868 9.128 3.842 -5.123 0.474 N5 U6Y 37 U6Y C28 C28 C 0 1 N N N -16.329 1.081 10.250 3.902 -3.778 0.458 C28 U6Y 38 U6Y O6 O6 O 0 1 N N N -15.178 0.965 10.523 3.514 -3.055 1.351 O6 U6Y 39 U6Y O7 O7 O 0 1 N N N -20.277 -0.172 13.411 1.397 -0.441 0.286 O7 U6Y 40 U6Y C29 C29 C 0 1 N N N -18.252 -1.410 17.937 1.089 5.173 -1.297 C29 U6Y 41 U6Y H1 H1 H 0 1 N N N -20.442 -1.674 19.692 1.699 3.686 -3.499 H1 U6Y 42 U6Y H2 H2 H 0 1 N N N -21.719 -1.177 18.530 0.312 2.574 -3.423 H2 U6Y 43 U6Y H3 H3 H 0 1 N N N -20.749 -2.657 18.220 0.043 4.317 -3.665 H3 U6Y 44 U6Y H4 H4 H 0 1 N N N -19.654 0.241 18.243 -0.442 3.657 -1.324 H4 U6Y 45 U6Y H5 H5 H 0 1 N N N -21.116 -0.338 16.275 2.473 2.761 -1.374 H5 U6Y 46 U6Y H6 H6 H 0 1 N N N -20.085 -1.772 15.948 1.507 2.939 0.110 H6 U6Y 47 U6Y H7 H7 H 0 1 N N N -18.140 -0.042 15.846 0.754 1.154 -2.248 H7 U6Y 48 U6Y H8 H8 H 0 1 N N N -18.696 4.488 15.667 -2.296 0.332 1.583 H8 U6Y 49 U6Y H9 H9 H 0 1 N N N -19.501 4.430 14.062 -2.441 2.108 1.770 H9 U6Y 50 U6Y H10 H10 H 0 1 N N N -21.483 3.572 14.948 -3.127 2.409 -0.469 H10 U6Y 51 U6Y H11 H11 H 0 1 N N N -20.461 4.292 17.681 -3.840 -0.423 -0.682 H11 U6Y 52 U6Y H12 H12 H 0 1 N N N -23.124 7.706 18.875 -7.376 0.776 1.632 H12 U6Y 53 U6Y H13 H13 H 0 1 N N N -23.902 6.975 17.430 -7.781 1.388 0.011 H13 U6Y 54 U6Y H14 H14 H 0 1 N N N -24.184 9.810 17.729 -8.146 -1.407 2.364 H14 U6Y 55 U6Y H15 H15 H 0 1 N N N -23.635 11.842 16.417 -9.856 -3.163 2.128 H15 U6Y 56 U6Y H16 H16 H 0 1 N N N -21.660 11.833 14.909 -11.196 -3.308 0.068 H16 U6Y 57 U6Y H17 H17 H 0 1 N N N -20.308 9.773 14.702 -10.827 -1.696 -1.757 H17 U6Y 58 U6Y H18 H18 H 0 1 N N N -20.785 7.759 16.058 -9.122 0.064 -1.518 H18 U6Y 59 U6Y H19 H19 H 0 1 N N N -21.536 1.607 16.177 -1.754 1.503 -2.151 H19 U6Y 60 U6Y H20 H20 H 0 1 N N N -20.340 2.210 17.374 -1.765 -0.125 -1.411 H20 U6Y 61 U6Y H21 H21 H 0 1 N N N -17.289 -1.007 14.054 3.398 0.820 -1.695 H21 U6Y 62 U6Y H22 H22 H 0 1 N N N -19.198 -1.429 11.756 3.661 -1.125 0.477 H22 U6Y 63 U6Y H23 H23 H 0 1 N N N -16.837 -3.194 12.690 6.023 -1.258 -0.268 H23 U6Y 64 U6Y H24 H24 H 0 1 N N N -18.598 -2.934 14.263 5.188 0.555 -2.377 H24 U6Y 65 U6Y H25 H25 H 0 1 N N N -20.074 -4.686 12.320 5.177 -0.145 1.970 H25 U6Y 66 U6Y H26 H26 H 0 1 N N N -19.222 -6.311 9.928 5.730 2.828 1.841 H26 U6Y 67 U6Y H27 H27 H 0 1 N N N -21.950 -6.120 11.503 4.529 2.911 4.073 H27 U6Y 68 U6Y H28 H28 H 0 1 N N N -21.529 -7.376 10.289 4.269 1.086 4.001 H28 U6Y 69 U6Y H29 H29 H 0 1 N N N -21.614 -4.246 9.681 6.780 0.731 3.924 H29 U6Y 70 U6Y H30 H30 H 0 1 N N N -21.193 -5.502 8.467 7.040 2.556 3.997 H30 U6Y 71 U6Y H31 H31 H 0 1 N N N -17.168 -1.486 10.321 2.659 -2.403 -1.439 H31 U6Y 72 U6Y H32 H32 H 0 1 N N N -16.162 -1.058 11.747 4.056 -1.937 -2.437 H32 U6Y 73 U6Y H33 H33 H 0 1 N N N -17.509 1.062 12.021 5.558 -3.007 -0.680 H33 U6Y 74 U6Y H34 H34 H 0 1 N N N -19.506 1.182 10.963 3.541 -4.512 -2.376 H34 U6Y 75 U6Y H35 H35 H 0 1 N N N -19.082 -0.152 9.836 5.334 -4.600 -2.402 H35 U6Y 76 U6Y H36 H36 H 0 1 N N N -18.848 2.793 9.455 3.764 -6.498 -1.124 H36 U6Y 77 U6Y H37 H37 H 0 1 N N N -18.849 1.479 8.230 5.410 -6.075 -0.570 H37 U6Y 78 U6Y H38 H38 H 0 1 N N N -16.369 2.360 8.438 3.476 -5.646 1.204 H38 U6Y 79 U6Y H39 H39 H 0 1 N N N -17.937 -1.443 18.990 2.147 5.257 -1.548 H39 U6Y 80 U6Y H40 H40 H 0 1 N N N -18.273 -2.431 17.529 0.522 5.914 -1.860 H40 U6Y 81 U6Y H41 H41 H 0 1 N N N -17.541 -0.799 17.361 0.954 5.345 -0.230 H41 U6Y 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U6Y N5 C27 SING N N 1 U6Y N5 C28 SING N N 2 U6Y C27 C26 SING N N 3 U6Y C23 C21 SING N N 4 U6Y C23 C22 SING N N 5 U6Y O5 C20 DOUB N N 6 U6Y C28 O6 DOUB N N 7 U6Y C28 C25 SING N N 8 U6Y C26 C25 SING N N 9 U6Y C21 C22 SING N N 10 U6Y C21 N4 SING N N 11 U6Y C25 C24 SING N N 12 U6Y C20 N4 SING N N 13 U6Y C20 C19 SING N N 14 U6Y C24 C18 SING N N 15 U6Y C18 C19 SING N N 16 U6Y C18 N3 SING N N 17 U6Y C19 O4 SING N N 18 U6Y O7 C17 DOUB N N 19 U6Y N3 C17 SING N N 20 U6Y O3 C5 DOUB N N 21 U6Y C17 C4 SING N N 22 U6Y C5 C6 SING N N 23 U6Y C5 N1 SING N N 24 U6Y C6 C7 SING N N 25 U6Y C14 C13 DOUB Y N 26 U6Y C14 C15 SING Y N 27 U6Y C13 C12 SING Y N 28 U6Y C4 N1 SING N N 29 U6Y C4 C3 SING N N 30 U6Y N1 C16 SING N N 31 U6Y C7 C16 SING N N 32 U6Y C7 N2 SING N N 33 U6Y O2 C8 DOUB N N 34 U6Y C15 C10 DOUB Y N 35 U6Y C12 C11 DOUB Y N 36 U6Y C3 C2 SING N N 37 U6Y C8 N2 SING N N 38 U6Y C8 O1 SING N N 39 U6Y C10 C11 SING Y N 40 U6Y C10 C9 SING N N 41 U6Y C2 C29 SING N N 42 U6Y C2 C1 SING N N 43 U6Y C9 O1 SING N N 44 U6Y C1 H1 SING N N 45 U6Y C1 H2 SING N N 46 U6Y C1 H3 SING N N 47 U6Y C2 H4 SING N N 48 U6Y C3 H5 SING N N 49 U6Y C3 H6 SING N N 50 U6Y C4 H7 SING N N 51 U6Y C6 H8 SING N N 52 U6Y C6 H9 SING N N 53 U6Y C7 H10 SING N N 54 U6Y N2 H11 SING N N 55 U6Y C9 H12 SING N N 56 U6Y C9 H13 SING N N 57 U6Y C11 H14 SING N N 58 U6Y C12 H15 SING N N 59 U6Y C13 H16 SING N N 60 U6Y C14 H17 SING N N 61 U6Y C15 H18 SING N N 62 U6Y C16 H19 SING N N 63 U6Y C16 H20 SING N N 64 U6Y N3 H21 SING N N 65 U6Y C18 H22 SING N N 66 U6Y C19 H23 SING N N 67 U6Y O4 H24 SING N N 68 U6Y N4 H25 SING N N 69 U6Y C21 H26 SING N N 70 U6Y C22 H27 SING N N 71 U6Y C22 H28 SING N N 72 U6Y C23 H29 SING N N 73 U6Y C23 H30 SING N N 74 U6Y C24 H31 SING N N 75 U6Y C24 H32 SING N N 76 U6Y C25 H33 SING N N 77 U6Y C26 H34 SING N N 78 U6Y C26 H35 SING N N 79 U6Y C27 H36 SING N N 80 U6Y C27 H37 SING N N 81 U6Y N5 H38 SING N N 82 U6Y C29 H39 SING N N 83 U6Y C29 H40 SING N N 84 U6Y C29 H41 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U6Y SMILES ACDLabs 12.01 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)C(=O)NC1CC1)N1CC(CC1=O)NC(=O)OCc1ccccc1" U6Y InChI InChI 1.06 "InChI=1S/C29H41N5O7/c1-17(2)12-23(34-15-21(14-24(34)35)32-29(40)41-16-18-6-4-3-5-7-18)27(38)33-22(13-19-10-11-30-26(19)37)25(36)28(39)31-20-8-9-20/h3-7,17,19-23,25,36H,8-16H2,1-2H3,(H,30,37)(H,31,39)(H,32,40)(H,33,38)/t19-,21-,22-,23-,25+/m0/s1" U6Y InChIKey InChI 1.06 CJHGCZGBAUVONS-TVLDRFKXSA-N U6Y SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N1C[C@H](CC1=O)NC(=O)OCc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(=O)NC4CC4" U6Y SMILES CACTVS 3.385 "CC(C)C[CH](N1C[CH](CC1=O)NC(=O)OCc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NC4CC4" U6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](C(=O)NC2CC2)O)N3C[C@H](CC3=O)NC(=O)OCc4ccccc4" U6Y SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(C(=O)NC2CC2)O)N3CC(CC3=O)NC(=O)OCc4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U6Y "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl {(3S)-1-[(2S)-1-({(2S,3R)-4-(cyclopropylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-5-oxopyrrolidin-3-yl}carbamate" U6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(3~{S})-1-[(2~{S})-1-[[(2~{S},3~{R})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-5-oxidanylidene-pyrrolidin-3-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U6Y "Create component" 2022-08-08 RCSB U6Y "Initial release" 2023-04-05 RCSB #