data_U87 # _chem_comp.id U87 _chem_comp.name "5'-([(3S)-3-amino-3-carboxypropyl]{3-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl}amino)-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 Cl2 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-01 _chem_comp.pdbx_modified_date 2020-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 609.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U87 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6WS1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U87 C C1 C 0 1 N N N -5.941 -18.485 -73.370 2.738 -5.723 1.006 C U87 1 U87 N N1 N 0 1 N N N -4.090 -18.349 -74.915 0.382 -5.251 1.366 N U87 2 U87 O O1 O 0 1 N N N -6.992 -18.037 -72.838 3.762 -6.091 0.221 O U87 3 U87 N1 N2 N 0 1 Y N N -1.001 -15.593 -85.024 7.093 4.248 1.596 N1 U87 4 U87 O1 O2 O 0 1 N N N -5.505 -19.653 -73.201 2.829 -5.829 2.207 O1 U87 5 U87 C2 C2 C 0 1 Y N N -0.699 -15.789 -83.729 6.174 4.618 0.723 C2 U87 6 U87 C4 C3 C 0 1 Y N N -2.710 -14.887 -83.033 5.444 2.460 0.417 C4 U87 7 U87 C5 C4 C 0 1 Y N N -3.060 -14.666 -84.357 6.406 2.015 1.339 C5 U87 8 U87 C6 C5 C 0 1 Y N N -2.185 -15.033 -85.373 7.247 2.972 1.934 C6 U87 9 U87 C8 C6 C 0 1 Y N N -4.662 -13.983 -83.087 5.318 0.271 0.650 C8 U87 10 U87 C11 C7 C 0 1 N N N -8.155 -16.105 -77.293 -0.648 -1.145 -1.399 C11 U87 11 U87 C12 C8 C 0 1 N N N -8.914 -17.144 -78.105 -1.598 -1.185 -0.200 C12 U87 12 U87 C13 C9 C 0 1 N N N -9.646 -18.146 -77.233 -2.934 -0.547 -0.585 C13 U87 13 U87 CA C10 C 0 1 N N S -5.144 -17.562 -74.245 1.478 -5.171 0.392 CA U87 14 U87 CB C11 C 0 1 N N N -6.069 -16.844 -75.233 1.701 -3.710 -0.005 CB U87 15 U87 CG C12 C 0 1 N N N -6.150 -17.373 -76.672 0.474 -3.193 -0.757 CG U87 16 U87 ND N3 N 0 1 N N N -6.693 -16.244 -77.481 0.634 -1.758 -1.028 ND U87 17 U87 "C1'" C13 C 0 1 N N R -3.779 -14.490 -80.792 3.674 1.296 -0.968 "C1'" U87 18 U87 C14 C14 C 0 1 N N R -11.153 -17.924 -77.195 -3.883 -0.586 0.614 C14 U87 19 U87 C15 C15 C 0 1 N N N -11.826 -18.319 -78.507 -3.317 0.281 1.738 C15 U87 20 U87 C16 C16 C 0 1 N N N -13.189 -20.107 -77.630 -5.433 1.278 2.320 C16 U87 21 U87 C17 C17 C 0 1 Y N N -12.210 -20.125 -76.456 -5.957 0.794 0.993 C17 U87 22 U87 C18 C18 C 0 1 Y N N -11.756 -18.726 -76.054 -5.237 -0.070 0.198 C18 U87 23 U87 C19 C19 C 0 1 Y N N -10.751 -18.900 -74.943 -5.757 -0.486 -1.019 C19 U87 24 U87 "C2'" C20 C 0 1 N N R -4.778 -13.443 -80.350 4.225 1.115 -2.400 "C2'" U87 25 U87 C20 C21 C 0 1 Y N N -11.131 -19.611 -73.886 -6.995 -0.041 -1.437 C20 U87 26 U87 C21 C22 C 0 1 Y N N -12.158 -20.661 -74.064 -7.721 0.825 -0.639 C21 U87 27 U87 C22 C23 C 0 1 Y N N -12.858 -20.690 -75.223 -7.202 1.241 0.573 C22 U87 28 U87 "C3'" C24 C 0 1 N N S -5.302 -13.970 -79.030 3.197 0.186 -3.083 "C3'" U87 29 U87 "C4'" C25 C 0 1 N N R -5.046 -15.468 -79.108 2.146 -0.085 -1.983 "C4'" U87 30 U87 "C5'" C26 C 0 1 N N N -6.315 -16.303 -78.910 1.647 -1.528 -2.068 "C5'" U87 31 U87 N10 N4 N 0 1 N N N -13.207 -18.756 -78.213 -4.342 0.415 2.786 N10 U87 32 U87 N3 N5 N 0 1 Y N N -1.530 -15.450 -82.738 5.365 3.758 0.141 N3 U87 33 U87 N6 N6 N 0 1 N N N -2.502 -14.835 -86.680 8.213 2.593 2.850 N6 U87 34 U87 N7 N7 N 0 1 Y N N -4.273 -14.107 -84.369 6.275 0.670 1.436 N7 U87 35 U87 N9 N8 N 0 1 Y N N -3.706 -14.459 -82.272 4.774 1.338 -0.001 N9 U87 36 U87 "O2'" O3 O 0 1 N N N -4.172 -12.155 -80.224 4.288 2.373 -3.075 "O2'" U87 37 U87 "O3'" O4 O 0 1 N N N -4.568 -13.384 -77.939 2.594 0.842 -4.201 "O3'" U87 38 U87 O4 O5 O 0 1 N N N -4.393 -15.701 -80.369 2.850 0.132 -0.740 O4 U87 39 U87 CL1 CL1 CL 0 0 N N N -12.395 -21.763 -72.694 -9.279 1.387 -1.158 CL1 U87 40 U87 CL2 CL2 CL 0 0 N N N -14.532 -21.260 -75.369 -8.113 2.328 1.575 CL2 U87 41 U87 H1 H1 H 0 1 N N N -3.518 -18.795 -74.227 0.171 -6.211 1.596 H1 U87 42 U87 H2 H2 H 0 1 N N N -4.512 -19.043 -75.498 0.596 -4.719 2.197 H2 U87 43 U87 H4 H4 H 0 1 N N N -7.389 -18.713 -72.302 4.578 -6.365 0.663 H4 U87 44 U87 H5 H5 H 0 1 N N N 0.251 -16.237 -83.479 6.083 5.666 0.477 H5 U87 45 U87 H6 H6 H 0 1 N N N -5.602 -13.563 -82.762 5.002 -0.754 0.530 H6 U87 46 U87 H7 H7 H 0 1 N N N -8.465 -15.100 -77.616 -1.089 -1.697 -2.229 H7 U87 47 U87 H8 H8 H 0 1 N N N -8.394 -16.237 -76.227 -0.484 -0.110 -1.697 H8 U87 48 U87 H9 H9 H 0 1 N N N -9.649 -16.627 -78.740 -1.763 -2.220 0.099 H9 U87 49 U87 H10 H10 H 0 1 N N N -8.198 -17.687 -78.740 -1.158 -0.633 0.631 H10 U87 50 U87 H11 H11 H 0 1 N N N -9.452 -19.156 -77.623 -2.769 0.489 -0.884 H11 U87 51 U87 H12 H12 H 0 1 N N N -9.256 -18.067 -76.208 -3.374 -1.099 -1.416 H12 U87 52 U87 H13 H13 H 0 1 N N N -4.668 -16.802 -73.608 1.220 -5.753 -0.493 H13 U87 53 U87 H14 H14 H 0 1 N N N -5.735 -15.797 -75.289 1.858 -3.110 0.891 H14 U87 54 U87 H15 H15 H 0 1 N N N -7.085 -16.883 -74.814 2.578 -3.639 -0.649 H15 U87 55 U87 H16 H16 H 0 1 N N N -6.822 -18.242 -76.725 0.371 -3.731 -1.700 H16 U87 56 U87 H17 H17 H 0 1 N N N -5.151 -17.659 -77.033 -0.418 -3.350 -0.150 H17 U87 57 U87 H19 H19 H 0 1 N N N -2.794 -14.326 -80.330 3.076 2.204 -0.904 H19 U87 58 U87 H20 H20 H 0 1 N N N -11.344 -16.856 -77.012 -3.980 -1.614 0.965 H20 U87 59 U87 H21 H21 H 0 1 N N N -11.268 -19.143 -78.977 -2.428 -0.194 2.155 H21 U87 60 U87 H22 H22 H 0 1 N N N -11.847 -17.455 -79.188 -3.061 1.265 1.348 H22 U87 61 U87 H23 H23 H 0 1 N N N -14.196 -20.370 -77.275 -5.064 2.298 2.212 H23 U87 62 U87 H24 H24 H 0 1 N N N -12.867 -20.833 -78.391 -6.239 1.262 3.053 H24 U87 63 U87 H27 H27 H 0 1 N N N -9.764 -18.465 -75.004 -5.191 -1.162 -1.642 H27 U87 64 U87 H29 H29 H 0 1 N N N -5.604 -13.406 -81.075 5.209 0.646 -2.375 H29 U87 65 U87 H30 H30 H 0 1 N N N -10.698 -19.425 -72.914 -7.396 -0.368 -2.385 H30 U87 66 U87 H32 H32 H 0 1 N N N -6.380 -13.773 -78.941 3.671 -0.743 -3.398 H32 U87 67 U87 H33 H33 H 0 1 N N N -4.349 -15.729 -78.298 1.312 0.611 -2.076 H33 U87 68 U87 H34 H34 H 0 1 N N N -7.129 -15.894 -79.527 2.483 -2.211 -1.917 H34 U87 69 U87 H35 H35 H 0 1 N N N -6.123 -17.346 -79.201 1.206 -1.704 -3.049 H35 U87 70 U87 H36 H36 H 0 1 N N N -13.625 -18.120 -77.564 -4.691 -0.488 3.069 H36 U87 71 U87 H38 H38 H 0 1 N N N -1.752 -15.158 -87.258 8.788 3.263 3.253 H38 U87 72 U87 H39 H39 H 0 1 N N N -3.335 -15.342 -86.901 8.316 1.659 3.088 H39 U87 73 U87 H40 H40 H 0 1 N N N -4.825 -11.523 -79.946 4.627 2.318 -3.979 H40 U87 74 U87 H41 H41 H 0 1 N N N -4.902 -13.719 -77.115 3.219 1.090 -4.896 H41 U87 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U87 N6 C6 SING N N 1 U87 C6 N1 DOUB Y N 2 U87 C6 C5 SING Y N 3 U87 N1 C2 SING Y N 4 U87 N7 C5 SING Y N 5 U87 N7 C8 DOUB Y N 6 U87 C5 C4 DOUB Y N 7 U87 C2 N3 DOUB Y N 8 U87 C8 N9 SING Y N 9 U87 C4 N3 SING Y N 10 U87 C4 N9 SING Y N 11 U87 N9 "C1'" SING N N 12 U87 "C1'" O4 SING N N 13 U87 "C1'" "C2'" SING N N 14 U87 O4 "C4'" SING N N 15 U87 "C2'" "O2'" SING N N 16 U87 "C2'" "C3'" SING N N 17 U87 "C4'" "C3'" SING N N 18 U87 "C4'" "C5'" SING N N 19 U87 "C3'" "O3'" SING N N 20 U87 "C5'" ND SING N N 21 U87 C15 N10 SING N N 22 U87 C15 C14 SING N N 23 U87 N10 C16 SING N N 24 U87 C12 C11 SING N N 25 U87 C12 C13 SING N N 26 U87 C16 C17 SING N N 27 U87 ND C11 SING N N 28 U87 ND CG SING N N 29 U87 C13 C14 SING N N 30 U87 C14 C18 SING N N 31 U87 CG CB SING N N 32 U87 C17 C18 DOUB Y N 33 U87 C17 C22 SING Y N 34 U87 C18 C19 SING Y N 35 U87 CL2 C22 SING N N 36 U87 CB CA SING N N 37 U87 C22 C21 DOUB Y N 38 U87 C19 C20 DOUB Y N 39 U87 N CA SING N N 40 U87 CA C SING N N 41 U87 C21 C20 SING Y N 42 U87 C21 CL1 SING N N 43 U87 C O1 DOUB N N 44 U87 C O SING N N 45 U87 N H1 SING N N 46 U87 N H2 SING N N 47 U87 O H4 SING N N 48 U87 C2 H5 SING N N 49 U87 C8 H6 SING N N 50 U87 C11 H7 SING N N 51 U87 C11 H8 SING N N 52 U87 C12 H9 SING N N 53 U87 C12 H10 SING N N 54 U87 C13 H11 SING N N 55 U87 C13 H12 SING N N 56 U87 CA H13 SING N N 57 U87 CB H14 SING N N 58 U87 CB H15 SING N N 59 U87 CG H16 SING N N 60 U87 CG H17 SING N N 61 U87 "C1'" H19 SING N N 62 U87 C14 H20 SING N N 63 U87 C15 H21 SING N N 64 U87 C15 H22 SING N N 65 U87 C16 H23 SING N N 66 U87 C16 H24 SING N N 67 U87 C19 H27 SING N N 68 U87 "C2'" H29 SING N N 69 U87 C20 H30 SING N N 70 U87 "C3'" H32 SING N N 71 U87 "C4'" H33 SING N N 72 U87 "C5'" H34 SING N N 73 U87 "C5'" H35 SING N N 74 U87 N10 H36 SING N N 75 U87 N6 H38 SING N N 76 U87 N6 H39 SING N N 77 U87 "O2'" H40 SING N N 78 U87 "O3'" H41 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U87 SMILES ACDLabs 12.01 "C(=O)(O)C(N)CCN(CCCC1c2c(CNC1)c(c(cc2)Cl)Cl)CC3C(C(C(O3)n5c4ncnc(c4nc5)N)O)O" U87 InChI InChI 1.03 "InChI=1S/C26H34Cl2N8O5/c27-16-4-3-14-13(8-31-9-15(14)19(16)28)2-1-6-35(7-5-17(29)26(39)40)10-18-21(37)22(38)25(41-18)36-12-34-20-23(30)32-11-33-24(20)36/h3-4,11-13,17-18,21-22,25,31,37-38H,1-2,5-10,29H2,(H,39,40)(H2,30,32,33)/t13-,17-,18+,21+,22+,25+/m0/s1" U87 InChIKey InChI 1.03 LJUSEDZPCVZRMF-RYHYOYCJSA-N U87 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CCC[C@H]1CNCc2c(Cl)c(Cl)ccc12)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O" U87 SMILES CACTVS 3.385 "N[CH](CCN(CCC[CH]1CNCc2c(Cl)c(Cl)ccc12)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O" U87 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1[C@H](CNC2)CCCN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)Cl)Cl" U87 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1C(CNC2)CCCN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)Cl)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U87 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-([(3S)-3-amino-3-carboxypropyl]{3-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl}amino)-5'-deoxyadenosine" U87 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[(4~{R})-7,8-bis(chloranyl)-1,2,3,4-tetrahydroisoquinolin-4-yl]propyl]amino]-2-azanyl-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U87 "Create component" 2020-05-01 RCSB U87 "Initial release" 2020-08-05 RCSB ##