data_U8B # _chem_comp.id U8B _chem_comp.name "(2~{S})-2-azanyl-5-[[(2~{R})-3-[(2~{R},5~{R})-5-(hydroxymethyl)-3,6-bis(oxidanylidene)-2-(phenylmethyl)-5-sulfanyl-piperazin-2-yl]sulfanyl-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H29 N5 O9 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-28 _chem_comp.pdbx_modified_date 2021-05-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 571.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U8B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NC6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U8B C4 C1 C 0 1 N N N -12.804 1.947 56.551 1.988 -3.446 1.401 C4 U8B 1 U8B C5 C2 C 0 1 N N R -13.751 3.118 56.763 2.096 -2.007 0.892 C5 U8B 2 U8B C7 C3 C 0 1 N N N -16.573 3.793 55.856 0.767 0.443 0.347 C7 U8B 3 U8B C8 C4 C 0 1 N N R -17.407 4.375 56.995 -0.506 1.283 0.468 C8 U8B 4 U8B C10 C5 C 0 1 N N N -17.430 3.123 59.085 -2.884 0.835 0.177 C10 U8B 5 U8B C13 C6 C 0 1 N N N -17.589 2.075 61.315 -5.349 0.579 0.103 C13 U8B 6 U8B C21 C7 C 0 1 N N N -19.337 6.943 54.941 0.898 4.744 -0.371 C21 U8B 7 U8B C22 C8 C 0 1 N N N -18.730 8.161 54.261 2.036 5.456 0.313 C22 U8B 8 U8B O18 O1 O 0 1 N N N -19.045 -0.801 60.783 -8.528 1.046 -0.394 O18 U8B 9 U8B C16 C9 C 0 1 N N N -18.095 -0.437 61.509 -7.801 0.210 0.089 C16 U8B 10 U8B O17 O2 O 0 1 N N N -17.106 -1.135 61.814 -8.149 -0.402 1.232 O17 U8B 11 U8B C14 C10 C 0 1 N N S -18.202 0.966 62.143 -6.504 -0.145 -0.592 C14 U8B 12 U8B N15 N1 N 0 1 N N N -17.567 0.967 63.474 -6.563 0.266 -2.001 N15 U8B 13 U8B C12 C11 C 0 1 N N N -17.934 1.882 59.857 -4.022 0.123 -0.507 C12 U8B 14 U8B O11 O3 O 0 1 N N N -16.529 3.833 59.534 -3.112 1.629 1.065 O11 U8B 15 U8B N9 N2 N 0 1 N N N -17.911 3.284 57.851 -1.612 0.590 -0.198 N9 U8B 16 U8B C19 C12 C 0 1 N N N -18.589 5.174 56.428 -0.287 2.623 -0.185 C19 U8B 17 U8B O25 O4 O 0 1 N N N -19.747 4.938 56.768 -0.987 2.966 -1.115 O25 U8B 18 U8B N20 N3 N 0 1 N N N -18.278 6.137 55.556 0.686 3.441 0.264 N20 U8B 19 U8B O23 O5 O 0 1 N N N -19.040 8.351 53.066 2.611 4.929 1.236 O23 U8B 20 U8B O24 O6 O 0 1 N N N -17.974 8.881 54.950 2.412 6.676 -0.103 O24 U8B 21 U8B S6 S1 S 0 1 N N N -15.436 2.429 56.396 0.504 -1.171 1.133 S6 U8B 22 U8B C3 C13 C 0 1 Y N N -11.413 2.177 56.739 1.017 -4.211 0.539 C3 U8B 23 U8B C55 C14 C 0 1 Y N N -10.858 2.702 57.910 1.468 -4.886 -0.580 C55 U8B 24 U8B C56 C15 C 0 1 Y N N -9.479 2.860 58.042 0.578 -5.588 -1.370 C56 U8B 25 U8B C57 C16 C 0 1 Y N N -8.619 2.473 57.020 -0.765 -5.616 -1.041 C57 U8B 26 U8B C1 C17 C 0 1 Y N N -9.151 1.927 55.859 -1.216 -4.942 0.078 C1 U8B 27 U8B C2 C18 C 0 1 Y N N -10.530 1.774 55.733 -0.325 -4.244 0.871 C2 U8B 28 U8B C53 C19 C 0 1 N N N -13.729 3.592 58.090 3.152 -1.287 1.676 C53 U8B 29 U8B O54 O7 O 0 1 N N N -13.794 2.808 59.044 3.230 -1.490 2.869 O54 U8B 30 U8B N52 N4 N 0 1 N N N -13.653 4.972 58.401 4.011 -0.431 1.113 N52 U8B 31 U8B N26 N5 N 0 1 N N N -13.380 4.207 55.805 2.412 -2.026 -0.530 N26 U8B 32 U8B C27 C20 C 0 1 N N N -13.271 5.577 56.126 3.274 -1.173 -1.092 C27 U8B 33 U8B O28 O8 O 0 1 N N N -12.955 6.342 55.213 3.480 -1.256 -2.284 O28 U8B 34 U8B C29 C21 C 0 1 N N R -13.556 6.079 57.407 3.998 -0.119 -0.309 C29 U8B 35 U8B C50 C22 C 0 1 N N N -12.448 7.034 57.882 5.439 -0.020 -0.814 C50 U8B 36 U8B O51 O9 O 0 1 N N N -12.708 7.483 59.219 5.435 0.328 -2.200 O51 U8B 37 U8B S30 S2 S 0 1 N N N -15.136 7.009 57.269 3.172 1.477 -0.557 S30 U8B 38 U8B H1 H1 H 0 1 N N N -12.942 1.596 55.518 2.967 -3.922 1.355 H1 U8B 39 U8B H2 H2 H 0 1 N N N -13.103 1.153 57.251 1.633 -3.441 2.431 H2 U8B 40 U8B H3 H3 H 0 1 N N N -15.966 4.601 55.420 1.009 0.299 -0.706 H3 U8B 41 U8B H4 H4 H 0 1 N N N -17.257 3.395 55.092 1.590 0.958 0.842 H4 U8B 42 U8B H5 H5 H 0 1 N N N -16.775 5.050 57.591 -0.748 1.427 1.521 H5 U8B 43 U8B H6 H6 H 0 1 N N N -16.496 2.058 61.436 -5.460 1.655 -0.032 H6 U8B 44 U8B H7 H7 H 0 1 N N N -17.981 3.044 61.657 -5.360 0.343 1.167 H7 U8B 45 U8B H8 H8 H 0 1 N N N -20.043 7.273 55.718 -0.009 5.342 -0.285 H8 U8B 46 U8B H9 H9 H 0 1 N N N -19.871 6.336 54.195 1.140 4.600 -1.424 H9 U8B 47 U8B H10 H10 H 0 1 N N N -17.184 -1.991 61.409 -8.990 -0.141 1.631 H10 U8B 48 U8B H11 H11 H 0 1 N N N -19.271 1.191 62.269 -6.346 -1.222 -0.534 H11 U8B 49 U8B H12 H12 H 0 1 N N N -17.963 0.238 64.033 -7.277 -0.245 -2.498 H12 U8B 50 U8B H13 H13 H 0 1 N N N -16.584 0.814 63.374 -6.709 1.261 -2.082 H13 U8B 51 U8B H15 H15 H 0 1 N N N -19.023 1.785 59.740 -4.011 0.359 -1.571 H15 U8B 52 U8B H16 H16 H 0 1 N N N -17.442 0.977 59.472 -3.910 -0.953 -0.372 H16 U8B 53 U8B H17 H17 H 0 1 N N N -18.615 2.664 57.505 -1.430 -0.045 -0.908 H17 U8B 54 U8B H18 H18 H 0 1 N N N -17.321 6.308 55.322 1.245 3.166 1.007 H18 U8B 55 U8B H19 H19 H 0 1 N N N -17.663 9.608 54.424 3.147 7.093 0.367 H19 U8B 56 U8B H20 H20 H 0 1 N N N -11.507 2.989 58.724 2.517 -4.864 -0.837 H20 U8B 57 U8B H21 H21 H 0 1 N N N -9.074 3.287 58.948 0.930 -6.114 -2.245 H21 U8B 58 U8B H22 H22 H 0 1 N N N -7.551 2.595 57.128 -1.461 -6.164 -1.659 H22 U8B 59 U8B H23 H23 H 0 1 N N N -8.497 1.622 55.056 -2.265 -4.963 0.334 H23 U8B 60 U8B H24 H24 H 0 1 N N N -10.928 1.331 54.832 -0.678 -3.717 1.745 H24 U8B 61 U8B H25 H25 H 0 1 N N N -13.665 5.225 59.368 4.671 0.001 1.677 H25 U8B 62 U8B H26 H26 H 0 1 N N N -13.194 3.942 54.859 1.978 -2.685 -1.093 H26 U8B 63 U8B H27 H27 H 0 1 N N N -11.482 6.508 57.859 5.970 0.745 -0.249 H27 U8B 64 U8B H28 H28 H 0 1 N N N -12.408 7.904 57.210 5.937 -0.981 -0.683 H28 U8B 65 U8B H29 H29 H 0 1 N N N -12.015 8.071 59.496 6.317 0.408 -2.588 H29 U8B 66 U8B H30 H30 H 0 1 N N N -15.311 7.428 58.487 3.910 2.319 0.188 H30 U8B 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U8B O23 C22 DOUB N N 1 U8B C22 C21 SING N N 2 U8B C22 O24 SING N N 3 U8B C21 N20 SING N N 4 U8B O28 C27 DOUB N N 5 U8B N20 C19 SING N N 6 U8B C2 C1 DOUB Y N 7 U8B C2 C3 SING Y N 8 U8B N26 C27 SING N N 9 U8B N26 C5 SING N N 10 U8B C7 S6 SING N N 11 U8B C7 C8 SING N N 12 U8B C1 C57 SING Y N 13 U8B C27 C29 SING N N 14 U8B S6 C5 SING N N 15 U8B C19 O25 DOUB N N 16 U8B C19 C8 SING N N 17 U8B C4 C3 SING N N 18 U8B C4 C5 SING N N 19 U8B C3 C55 DOUB Y N 20 U8B C5 C53 SING N N 21 U8B C8 N9 SING N N 22 U8B C57 C56 DOUB Y N 23 U8B S30 C29 SING N N 24 U8B C29 C50 SING N N 25 U8B C29 N52 SING N N 26 U8B N9 C10 SING N N 27 U8B C50 O51 SING N N 28 U8B C55 C56 SING Y N 29 U8B C53 N52 SING N N 30 U8B C53 O54 DOUB N N 31 U8B C10 O11 DOUB N N 32 U8B C10 C12 SING N N 33 U8B C12 C13 SING N N 34 U8B O18 C16 DOUB N N 35 U8B C13 C14 SING N N 36 U8B C16 O17 SING N N 37 U8B C16 C14 SING N N 38 U8B C14 N15 SING N N 39 U8B C4 H1 SING N N 40 U8B C4 H2 SING N N 41 U8B C7 H3 SING N N 42 U8B C7 H4 SING N N 43 U8B C8 H5 SING N N 44 U8B C13 H6 SING N N 45 U8B C13 H7 SING N N 46 U8B C21 H8 SING N N 47 U8B C21 H9 SING N N 48 U8B O17 H10 SING N N 49 U8B C14 H11 SING N N 50 U8B N15 H12 SING N N 51 U8B N15 H13 SING N N 52 U8B C12 H15 SING N N 53 U8B C12 H16 SING N N 54 U8B N9 H17 SING N N 55 U8B N20 H18 SING N N 56 U8B O24 H19 SING N N 57 U8B C55 H20 SING N N 58 U8B C56 H21 SING N N 59 U8B C57 H22 SING N N 60 U8B C1 H23 SING N N 61 U8B C2 H24 SING N N 62 U8B N52 H25 SING N N 63 U8B N26 H26 SING N N 64 U8B C50 H27 SING N N 65 U8B C50 H28 SING N N 66 U8B O51 H29 SING N N 67 U8B S30 H30 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U8B InChI InChI 1.03 "InChI=1S/C22H29N5O9S2/c23-13(18(33)34)6-7-15(29)25-14(17(32)24-9-16(30)31)10-38-22(8-12-4-2-1-3-5-12)20(36)26-21(37,11-28)19(35)27-22/h1-5,13-14,28,37H,6-11,23H2,(H,24,32)(H,25,29)(H,26,36)(H,27,35)(H,30,31)(H,33,34)/t13-,14-,21+,22+/m0/s1" U8B InChIKey InChI 1.03 BVLPJUGYSWKCGB-HCIHMXRSSA-N U8B SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@@H](CS[C@@]1(Cc2ccccc2)NC(=O)[C@](S)(CO)NC1=O)C(=O)NCC(O)=O)C(O)=O" U8B SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CS[C]1(Cc2ccccc2)NC(=O)[C](S)(CO)NC1=O)C(=O)NCC(O)=O)C(O)=O" U8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@]2(C(=O)N[C@](C(=O)N2)(CO)S)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N" U8B SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2(C(=O)NC(C(=O)N2)(CO)S)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id U8B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-5-[[(2~{R})-3-[(2~{R},5~{R})-5-(hydroxymethyl)-3,6-bis(oxidanylidene)-2-(phenylmethyl)-5-sulfanyl-piperazin-2-yl]sulfanyl-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U8B "Create component" 2021-01-28 PDBE U8B "Initial release" 2021-05-12 RCSB ##