data_U93 # _chem_comp.id U93 _chem_comp.name "(2~{S})-2-[[(~{R})-[[(5~{S})-5-azanyl-6-oxidanylidene-hexyl]amino]-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl]amino]-3-phosphonooxy-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H30 N4 O12 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-30 _chem_comp.pdbx_modified_date 2023-03-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.387 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U93 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A5W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U93 N N1 N 0 1 N N N -4.649 -55.517 -77.813 -7.194 -0.785 -0.810 N U93 1 U93 CA C1 C 0 1 N N S -3.689 -54.419 -77.868 -6.742 -2.117 -0.384 CA U93 2 U93 C C2 C 0 1 N N N -4.153 -53.142 -77.161 -7.889 -2.854 0.258 C U93 3 U93 O O1 O 0 1 N N N -3.363 -52.468 -76.500 -8.970 -2.325 0.352 O U93 4 U93 CB C3 C 0 1 N N N -3.319 -54.095 -79.312 -5.601 -1.970 0.624 CB U93 5 U93 CAF C4 C 0 1 N N N -2.956 -55.393 -80.043 -4.391 -1.334 -0.064 CAF U93 6 U93 CAG C5 C 0 1 N N N -2.470 -54.941 -81.405 -3.250 -1.187 0.944 CAG U93 7 U93 CAH C6 C 0 1 N N N -2.131 -56.028 -82.415 -2.041 -0.551 0.256 CAH U93 8 U93 CAP C7 C 0 1 Y N N -1.600 -55.544 -86.425 1.717 1.959 3.605 CAP U93 9 U93 CAQ C8 C 0 1 N N N -1.511 -54.252 -86.895 2.168 1.637 5.006 CAQ U93 10 U93 CAR C9 C 0 1 Y N N -0.999 -55.868 -85.224 1.208 0.951 2.799 CAR U93 11 U93 CAT C10 C 0 1 Y N N -1.052 -57.127 -84.614 0.795 1.263 1.507 CAT U93 12 U93 CAU C11 C 0 1 N N R -0.402 -57.357 -83.387 0.236 0.199 0.598 CAU U93 13 U93 CAV C12 C 0 1 Y N N -1.735 -58.115 -85.309 0.909 2.575 1.078 CAV U93 14 U93 CAW C13 C 0 1 N N N -1.800 -59.422 -84.784 0.474 2.963 -0.312 CAW U93 15 U93 CAX C14 C 0 1 Y N N -2.338 -57.766 -86.535 1.426 3.525 1.939 CAX U93 16 U93 CAZ C15 C 0 1 N N S 1.990 -57.535 -82.564 1.305 -1.218 -1.049 CAZ U93 17 U93 CBA C16 C 0 1 N N N 3.331 -56.780 -82.524 0.266 -2.276 -1.319 CBA U93 18 U93 CBC C17 C 0 1 N N N 2.172 -59.000 -83.042 2.693 -1.771 -1.380 CBC U93 19 U93 NAI N2 N 0 1 N N N -1.167 -57.116 -82.121 -0.945 -0.410 1.224 NAI U93 20 U93 NAO N3 N 0 1 Y N N -2.279 -56.477 -87.099 1.804 3.197 3.159 NAO U93 21 U93 NAY N4 N 0 1 N N N 0.968 -56.831 -83.377 1.256 -0.834 0.368 NAY U93 22 U93 OAK O2 O 0 1 N N N -3.853 -61.821 -85.379 1.026 4.446 -3.008 OAK U93 23 U93 OAL O3 O 0 1 N N N -1.978 -61.788 -83.773 0.837 6.650 -1.793 OAL U93 24 U93 OAM O4 O 0 1 N N N -4.309 -61.410 -82.967 -1.250 5.086 -2.123 OAM U93 25 U93 OAN O5 O 0 1 N N N -3.110 -59.803 -84.356 0.693 4.361 -0.507 OAN U93 26 U93 OAS O6 O 0 1 N N N -0.339 -54.872 -84.568 1.116 -0.322 3.263 OAS U93 27 U93 OBB O7 O 0 1 N N N 3.536 -55.864 -83.357 -0.443 -2.669 -0.423 OBB U93 28 U93 OBD O8 O 0 1 N N N 3.327 -59.655 -82.458 2.909 -2.981 -0.651 OBD U93 29 U93 OBF O9 O 0 1 N N N 4.194 -61.973 -82.195 5.494 -2.973 -0.168 OBF U93 30 U93 OBG O10 O 0 1 N N N 2.577 -61.373 -83.942 4.115 -5.197 0.091 OBG U93 31 U93 OBH O11 O 0 1 N N N 4.921 -60.568 -84.143 4.535 -4.167 -2.175 OBH U93 32 U93 OBI O12 O 0 1 N N N 4.125 -57.145 -81.632 0.128 -2.782 -2.555 OBI U93 33 U93 PAJ P1 P 0 1 N N N -3.343 -61.343 -84.075 0.342 5.121 -1.882 PAJ U93 34 U93 PBE P2 P 0 1 N N N 3.822 -60.994 -83.266 4.269 -3.837 -0.757 PBE U93 35 U93 H1 H1 H 0 1 N N N -4.878 -55.713 -76.859 -7.903 -0.855 -1.524 H1 U93 36 U93 H2 H2 H 0 1 N N N -5.479 -55.259 -78.308 -7.524 -0.247 -0.024 H2 U93 37 U93 H4 H4 H 0 1 N N N -2.768 -54.749 -77.365 -6.392 -2.676 -1.252 H4 U93 38 U93 H5 H5 H 0 1 N N N -5.184 -52.830 -77.243 -7.744 -3.855 0.635 H5 U93 39 U93 H6 H6 H 0 1 N N N -2.457 -53.411 -79.326 -5.925 -1.336 1.449 H6 U93 40 U93 H7 H7 H 0 1 N N N -4.174 -53.618 -79.813 -5.326 -2.953 1.006 H7 U93 41 U93 H8 H8 H 0 1 N N N -3.838 -56.043 -80.141 -4.068 -1.968 -0.890 H8 U93 42 U93 H9 H9 H 0 1 N N N -2.161 -55.932 -79.506 -4.667 -0.351 -0.447 H9 U93 43 U93 H10 H10 H 0 1 N N N -1.563 -54.338 -81.250 -3.574 -0.553 1.770 H10 U93 44 U93 H11 H11 H 0 1 N N N -3.258 -54.312 -81.846 -2.975 -2.170 1.327 H11 U93 45 U93 H12 H12 H 0 1 N N N -1.744 -55.509 -83.304 -1.717 -1.185 -0.569 H12 U93 46 U93 H13 H13 H 0 1 N N N -3.082 -56.521 -82.664 -2.316 0.432 -0.126 H13 U93 47 U93 H14 H14 H 0 1 N N N -2.062 -54.168 -87.843 3.223 1.363 4.994 H14 U93 48 U93 H15 H15 H 0 1 N N N -1.945 -53.562 -86.156 2.027 2.511 5.642 H15 U93 49 U93 H16 H16 H 0 1 N N N -0.455 -53.994 -87.060 1.581 0.806 5.395 H16 U93 50 U93 H17 H17 H 0 1 N N N -0.250 -58.446 -83.375 -0.048 0.647 -0.354 H17 U93 51 U93 H18 H18 H 0 1 N N N -1.470 -60.126 -85.562 1.053 2.399 -1.044 H18 U93 52 U93 H19 H19 H 0 1 N N N -1.121 -59.484 -83.921 -0.585 2.740 -0.437 H19 U93 53 U93 H20 H20 H 0 1 N N N -2.877 -58.532 -87.073 1.517 4.549 1.610 H20 U93 54 U93 H21 H21 H 0 1 N N N 1.618 -57.582 -81.530 1.104 -0.345 -1.670 H21 U93 55 U93 H22 H22 H 0 1 N N N 1.272 -59.571 -82.769 2.758 -1.974 -2.449 H22 U93 56 U93 H23 H23 H 0 1 N N N 2.288 -58.998 -84.136 3.451 -1.039 -1.102 H23 U93 57 U93 H24 H24 H 0 1 N N N -1.654 -57.945 -81.848 -0.714 -1.299 1.642 H24 U93 58 U93 H26 H26 H 0 1 N N N 1.292 -56.832 -84.323 2.161 -0.526 0.691 H26 U93 59 U93 H28 H28 H 0 1 N N N -1.652 -62.320 -84.489 0.657 7.169 -2.589 H28 U93 60 U93 H29 H29 H 0 1 N N N -5.132 -61.763 -83.285 -1.763 5.511 -1.423 H29 U93 61 U93 H30 H30 H 0 1 N N N 0.030 -55.213 -83.762 0.309 -0.500 3.765 H30 U93 62 U93 H31 H31 H 0 1 N N N 5.121 -62.172 -82.255 5.387 -2.721 0.759 H31 U93 63 U93 H32 H32 H 0 1 N N N 2.685 -61.278 -84.881 4.899 -5.763 0.072 H32 U93 64 U93 H33 H33 H 0 1 N N N 4.916 -56.621 -81.678 -0.552 -3.458 -2.679 H33 U93 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U93 NAO CAX DOUB Y N 1 U93 NAO CAP SING Y N 2 U93 CAQ CAP SING N N 3 U93 CAX CAV SING Y N 4 U93 CAP CAR DOUB Y N 5 U93 OAK PAJ DOUB N N 6 U93 CAV CAW SING N N 7 U93 CAV CAT DOUB Y N 8 U93 CAR CAT SING Y N 9 U93 CAR OAS SING N N 10 U93 CAW OAN SING N N 11 U93 CAT CAU SING N N 12 U93 OAN PAJ SING N N 13 U93 OBH PBE DOUB N N 14 U93 PAJ OAL SING N N 15 U93 PAJ OAM SING N N 16 U93 OBG PBE SING N N 17 U93 CAU NAY SING N N 18 U93 CAU NAI SING N N 19 U93 NAY CAZ SING N N 20 U93 OBB CBA DOUB N N 21 U93 PBE OBD SING N N 22 U93 PBE OBF SING N N 23 U93 CBC CAZ SING N N 24 U93 CBC OBD SING N N 25 U93 CAZ CBA SING N N 26 U93 CBA OBI SING N N 27 U93 CAH NAI SING N N 28 U93 CAH CAG SING N N 29 U93 CAG CAF SING N N 30 U93 CAF CB SING N N 31 U93 CB CA SING N N 32 U93 CA N SING N N 33 U93 CA C SING N N 34 U93 C O DOUB N N 35 U93 N H1 SING N N 36 U93 N H2 SING N N 37 U93 CA H4 SING N N 38 U93 C H5 SING N N 39 U93 CB H6 SING N N 40 U93 CB H7 SING N N 41 U93 CAF H8 SING N N 42 U93 CAF H9 SING N N 43 U93 CAG H10 SING N N 44 U93 CAG H11 SING N N 45 U93 CAH H12 SING N N 46 U93 CAH H13 SING N N 47 U93 CAQ H14 SING N N 48 U93 CAQ H15 SING N N 49 U93 CAQ H16 SING N N 50 U93 CAU H17 SING N N 51 U93 CAW H18 SING N N 52 U93 CAW H19 SING N N 53 U93 CAX H20 SING N N 54 U93 CAZ H21 SING N N 55 U93 CBC H22 SING N N 56 U93 CBC H23 SING N N 57 U93 NAI H24 SING N N 58 U93 NAY H26 SING N N 59 U93 OAL H28 SING N N 60 U93 OAM H29 SING N N 61 U93 OAS H30 SING N N 62 U93 OBF H31 SING N N 63 U93 OBG H32 SING N N 64 U93 OBI H33 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U93 InChI InChI 1.06 "InChI=1S/C17H30N4O12P2/c1-10-15(23)14(11(6-20-10)8-32-34(26,27)28)16(19-5-3-2-4-12(18)7-22)21-13(17(24)25)9-33-35(29,30)31/h6-7,12-13,16,19,21,23H,2-5,8-9,18H2,1H3,(H,24,25)(H2,26,27,28)(H2,29,30,31)/t12-,13-,16+/m0/s1" U93 InChIKey InChI 1.06 DIDMOBOUHGSDIF-HEHGZKQESA-N U93 SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@H](NCCCC[C@H](N)C=O)N[C@@H](CO[P](O)(O)=O)C(O)=O)c1O" U93 SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH](NCCCC[CH](N)C=O)N[CH](CO[P](O)(O)=O)C(O)=O)c1O" U93 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@H](NCCCC[C@@H](C=O)N)N[C@@H](COP(=O)(O)O)C(=O)O)O" U93 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C(NCCCCC(C=O)N)NC(COP(=O)(O)O)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id U93 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(~{R})-[[(5~{S})-5-azanyl-6-oxidanylidene-hexyl]amino]-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl]amino]-3-phosphonooxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U93 "Create component" 2023-01-31 PDBE U93 "Initial release" 2023-03-29 RCSB #