data_U9A # _chem_comp.id U9A _chem_comp.name "[(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy)tetrahydro-2H-pyran-3-yl]sulfamic acid" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 N O11 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-04 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9A C4 C4 C 0 1 N N R -0.229 110.459 290.428 -0.821 -1.624 0.027 C4 U9A 1 U9A C3 C3 C 0 1 N N R 1.096 109.817 289.999 0.529 -1.495 -0.686 C3 U9A 2 U9A C2 C2 C 0 1 N N R 1.080 108.312 290.273 1.284 -0.292 -0.113 C2 U9A 3 U9A C5 C5 C 0 1 N N R -1.407 109.836 289.646 -1.601 -0.317 -0.135 C5 U9A 4 U9A C1 C1 C 0 1 N N R -0.312 107.688 290.131 0.423 0.964 -0.269 C1 U9A 5 U9A N2 N2 N 0 1 N N N 1.627 108.025 291.621 2.545 -0.115 -0.838 N2 U9A 6 U9A OAB OAB O 0 1 N N N 2.948 106.043 292.658 4.269 -0.652 0.975 OAB U9A 7 U9A OAF OAF O 0 1 N N N 2.958 106.369 290.181 4.941 0.454 -0.995 OAF U9A 8 U9A OAH OAH O 0 1 N N N 4.209 107.960 291.627 3.488 1.557 0.713 OAH U9A 9 U9A O3 O3 O 0 1 N N N 1.387 110.069 288.610 1.294 -2.684 -0.478 O3 U9A 10 U9A O5 O5 O 0 1 N N N -1.143 108.464 289.219 -0.830 0.766 0.390 O5 U9A 11 U9A O1 O1 O 0 1 N Y N -0.187 106.360 289.597 1.097 2.080 0.314 O1 U9A 12 U9A SAG SAG S 0 1 N N N 2.962 107.076 291.530 3.892 0.420 -0.037 SAG U9A 13 U9A O5B O5B O 0 1 N N N -1.715 110.561 288.441 -2.838 -0.409 0.574 O5B U9A 14 U9A OBF OBF O 0 1 N N N -1.884 112.696 289.683 -4.438 -0.320 -1.280 OBF U9A 15 U9A OBH OBH O 0 1 N N N -3.927 111.414 289.081 -5.040 0.370 0.893 OBH U9A 16 U9A OBI OBI O 0 1 N N N -2.656 112.593 287.278 -3.376 1.628 -0.484 OBI U9A 17 U9A SBG SBG S 0 1 N N N -2.534 111.832 288.598 -3.964 0.415 -0.034 SBG U9A 18 U9A O4 O4 O 0 1 N N N -0.285 111.908 290.374 -0.605 -1.883 1.415 O4 U9A 19 U9A H6 H6 H 0 1 N N N -0.379 110.171 291.479 -1.388 -2.444 -0.413 H6 U9A 20 U9A H7 H7 H 0 1 N N N 1.894 110.259 290.613 0.365 -1.347 -1.754 H7 U9A 21 U9A H8 H8 H 0 1 N N N 1.734 107.833 289.530 1.492 -0.463 0.943 H8 U9A 22 U9A H9 H9 H 0 1 N N N -2.288 109.840 290.305 -1.801 -0.141 -1.192 H9 U9A 23 U9A H10 H10 H 0 1 N N N -0.785 107.651 291.123 0.249 1.156 -1.328 H10 U9A 24 U9A HAM HAM H 0 1 N N N 1.870 108.888 292.065 2.590 -0.310 -1.787 HAM U9A 25 U9A HAL HAL H 0 1 N N N 1.394 111.006 288.452 0.875 -3.486 -0.818 HAL U9A 26 U9A HO1 HO1 H 0 1 N Y N 0.352 105.835 290.176 0.608 2.912 0.251 HO1 U9A 27 U9A H14 H14 H 0 1 N N N 2.940 105.168 292.287 5.051 -0.437 1.502 H14 U9A 28 U9A H16 H16 H 0 1 N N N -2.481 112.786 290.417 -5.159 0.123 -1.747 H16 U9A 29 U9A H2 H2 H 0 1 N Y N 0.446 112.272 290.859 -1.418 -1.975 1.929 H2 U9A 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9A OBI SBG DOUB N N 1 U9A O5B SBG SING N N 2 U9A O5B C5 SING N N 3 U9A SBG OBH DOUB N N 4 U9A SBG OBF SING N N 5 U9A O3 C3 SING N N 6 U9A O5 C5 SING N N 7 U9A O5 C1 SING N N 8 U9A O1 C1 SING N N 9 U9A C5 C4 SING N N 10 U9A C3 C2 SING N N 11 U9A C3 C4 SING N N 12 U9A C1 C2 SING N N 13 U9A OAF SAG DOUB N N 14 U9A C2 N2 SING N N 15 U9A O4 C4 SING N N 16 U9A SAG N2 SING N N 17 U9A SAG OAH DOUB N N 18 U9A SAG OAB SING N N 19 U9A C4 H6 SING N N 20 U9A C3 H7 SING N N 21 U9A C2 H8 SING N N 22 U9A C5 H9 SING N N 23 U9A C1 H10 SING N N 24 U9A N2 HAM SING N N 25 U9A O3 HAL SING N N 26 U9A O1 HO1 SING N N 27 U9A OAB H14 SING N N 28 U9A OBF H16 SING N N 29 U9A O4 H2 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9A SMILES ACDLabs 12.01 "C1(C(C(NS(O)(=O)=O)C(OC1OS(O)(=O)=O)O)O)O" U9A InChI InChI 1.03 "InChI=1S/C5H11NO11S2/c7-2-1(6-18(10,11)12)4(9)16-5(3(2)8)17-19(13,14)15/h1-9H,(H,10,11,12)(H,13,14,15)/t1-,2-,3-,4-,5-/m1/s1" U9A InChIKey InChI 1.03 SENPUEYGUGAZCY-WHDMSYDLSA-N U9A SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1O[C@H](O[S](O)(=O)=O)[C@H](O)[C@H](O)[C@H]1N[S](O)(=O)=O" U9A SMILES CACTVS 3.385 "O[CH]1O[CH](O[S](O)(=O)=O)[CH](O)[CH](O)[CH]1N[S](O)(=O)=O" U9A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@H]([C@H]([C@H](O[C@H]1O)OS(=O)(=O)O)O)O)NS(=O)(=O)O" U9A SMILES "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(OC1O)OS(=O)(=O)O)O)O)NS(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U9A "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy)tetrahydro-2H-pyran-3-yl]sulfamic acid (non-preferred name)" U9A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{R},5~{R},6~{R})-2,4,5-tris(oxidanyl)-6-sulfooxy-oxan-3-yl]sulfamic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support U9A "CARBOHYDRATE RING" pyranose PDB ? U9A "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9A "Create component" 2020-05-04 RCSB U9A "Initial release" 2020-07-29 RCSB ##