data_U9B # _chem_comp.id U9B _chem_comp.name "(1R,3S)-3-(4-ammoniobutyl)-1-benzyl-1,4-azaphosphinan-1-ium-3-carboxylate 4,4-dioxide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H27 N2 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[(1~{R},3~{S})-3-carboxy-4-oxidanyl-4-oxidanylidene-1-(phenylmethyl)-1,4$l^{5}-azaphosphinan-1-ium-3-yl]butylazanium" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2021-02-04 _chem_comp.pdbx_modified_date 2021-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NEE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9B C1 C1 C 0 1 N N N 8.161 13.522 25.952 1.503 -4.478 -0.140 C1 U9B 1 U9B C2 C2 C 0 1 N N N 8.931 13.514 24.646 1.504 -3.216 0.725 C2 U9B 2 U9B C5 C3 C 0 1 N N S 11.764 15.581 22.940 1.602 0.516 -0.211 C5 U9B 3 U9B C6 C4 C 0 1 N N N 12.361 16.181 24.234 2.934 0.520 -0.916 C6 U9B 4 U9B C7 C5 C 0 1 N N N 12.579 14.289 22.779 0.462 0.514 -1.243 C7 U9B 5 U9B C8 C6 C 0 1 N N N 12.523 12.091 21.551 -1.878 0.101 -1.475 C8 U9B 6 U9B C15 C7 C 0 1 N N N 12.984 14.268 20.378 -1.154 1.892 -0.072 C15 U9B 7 U9B C16 C8 C 0 1 N N N 12.499 15.718 20.187 -0.358 2.190 1.215 C16 U9B 8 U9B N1 N1 N 1 1 N N N 7.287 14.711 26.088 1.515 -5.665 0.726 N1 U9B 9 U9B C3 C9 C 0 1 N N N 9.994 14.601 24.642 1.491 -1.980 -0.177 C3 U9B 10 U9B C4 C10 C 0 1 N N N 10.277 15.223 23.274 1.492 -0.718 0.688 C4 U9B 11 U9B O1 O1 O 0 1 N N N 11.751 17.105 24.765 4.014 1.033 -0.306 O1 U9B 12 U9B O2 O2 O 0 1 N N N 13.436 15.741 24.713 3.029 0.062 -2.030 O2 U9B 13 U9B N2 N2 N 1 1 N N N 12.259 13.586 21.501 -0.827 0.548 -0.551 N2 U9B 14 U9B C9 C11 C 0 1 Y N N 12.193 11.475 22.888 -3.178 -0.042 -0.726 C9 U9B 15 U9B C10 C12 C 0 1 Y N N 13.196 11.239 23.825 -3.504 -1.246 -0.131 C10 U9B 16 U9B C11 C13 C 0 1 Y N N 12.891 10.719 25.076 -4.697 -1.377 0.556 C11 U9B 17 U9B C12 C14 C 0 1 Y N N 11.572 10.445 25.404 -5.563 -0.304 0.648 C12 U9B 18 U9B C13 C15 C 0 1 Y N N 10.567 10.688 24.491 -5.237 0.901 0.053 C13 U9B 19 U9B C14 C16 C 0 1 Y N N 10.876 11.206 23.239 -4.042 1.033 -0.630 C14 U9B 20 U9B P1 P1 P 0 1 N N N 11.984 16.779 21.579 1.421 2.039 0.795 P1 U9B 21 U9B O3 O3 O 0 1 N N N 13.178 17.526 21.971 1.896 3.319 -0.058 O3 U9B 22 U9B O4 O4 O 0 1 N N N 10.891 17.609 21.100 2.226 1.930 2.032 O4 U9B 23 U9B H5 H1 H 0 1 N N N 7.536 12.618 25.999 0.607 -4.492 -0.762 H5 U9B 24 U9B H4 H2 H 0 1 N N N 8.879 13.515 26.785 2.387 -4.484 -0.776 H4 U9B 25 U9B H7 H3 H 0 1 N N N 8.233 13.689 23.814 0.619 -3.211 1.362 H7 U9B 26 U9B H6 H4 H 0 1 N N N 9.416 12.535 24.519 2.399 -3.203 1.347 H6 U9B 27 U9B H12 H5 H 0 1 N N N 12.352 13.618 23.621 0.553 1.391 -1.885 H12 U9B 28 U9B H13 H6 H 0 1 N N N 13.650 14.540 22.788 0.524 -0.388 -1.851 H13 U9B 29 U9B H15 H7 H 0 1 N N N 11.910 11.602 20.780 -1.997 0.834 -2.272 H15 U9B 30 U9B H16 H8 H 0 1 N N N 13.588 11.917 21.339 -1.599 -0.861 -1.905 H16 U9B 31 U9B H23 H9 H 0 1 N N N 12.809 13.708 19.448 -2.222 1.953 0.139 H23 U9B 32 U9B H22 H10 H 0 1 N N N 14.061 14.278 20.603 -0.893 2.624 -0.836 H22 U9B 33 U9B H24 H11 H 0 1 N N N 13.322 16.250 19.687 -0.575 3.201 1.560 H24 U9B 34 U9B H25 H12 H 0 1 N N N 11.633 15.662 19.511 -0.619 1.468 1.988 H25 U9B 35 U9B H3 H13 H 0 1 N N N 6.802 14.671 26.962 2.344 -5.653 1.302 H3 U9B 36 U9B H1 H14 H 0 1 N N N 7.845 15.540 26.054 0.696 -5.660 1.316 H1 U9B 37 U9B H2 H15 H 0 1 N N N 6.624 14.725 25.339 1.514 -6.498 0.156 H2 U9B 38 U9B H9 H16 H 0 1 N N N 10.931 14.164 25.018 2.375 -1.986 -0.814 H9 U9B 39 U9B H8 H17 H 0 1 N N N 9.665 15.402 25.320 0.595 -1.994 -0.799 H8 U9B 40 U9B H11 H18 H 0 1 N N N 9.691 16.151 23.206 2.341 -0.747 1.371 H11 U9B 41 U9B H10 H19 H 0 1 N N N 9.929 14.512 22.510 0.566 -0.669 1.261 H10 U9B 42 U9B H26 H20 H 0 1 N N N 12.219 17.390 25.541 4.846 1.014 -0.798 H26 U9B 43 U9B H14 H21 H 0 1 N N N 11.280 13.704 21.335 -0.794 -0.083 0.236 H14 U9B 44 U9B H17 H22 H 0 1 N N N 14.223 11.463 23.576 -2.828 -2.085 -0.203 H17 U9B 45 U9B H18 H23 H 0 1 N N N 13.678 10.529 25.791 -4.952 -2.318 1.020 H18 U9B 46 U9B H19 H24 H 0 1 N N N 11.331 10.041 26.376 -6.495 -0.406 1.184 H19 U9B 47 U9B H20 H25 H 0 1 N N N 9.540 10.476 24.749 -5.914 1.739 0.124 H20 U9B 48 U9B H21 H26 H 0 1 N N N 10.084 11.402 22.531 -3.785 1.975 -1.092 H21 U9B 49 U9B H27 H27 H 0 1 N N N 13.028 18.455 21.841 1.787 4.162 0.403 H27 U9B 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9B C16 C15 SING N N 1 U9B C16 P1 SING N N 2 U9B C15 N2 SING N N 3 U9B O4 P1 DOUB N N 4 U9B N2 C8 SING N N 5 U9B N2 C7 SING N N 6 U9B C8 C9 SING N N 7 U9B P1 O3 SING N N 8 U9B P1 C5 SING N N 9 U9B C7 C5 SING N N 10 U9B C9 C14 DOUB Y N 11 U9B C9 C10 SING Y N 12 U9B C5 C4 SING N N 13 U9B C5 C6 SING N N 14 U9B C14 C13 SING Y N 15 U9B C4 C3 SING N N 16 U9B C10 C11 DOUB Y N 17 U9B C6 O2 DOUB N N 18 U9B C6 O1 SING N N 19 U9B C13 C12 DOUB Y N 20 U9B C3 C2 SING N N 21 U9B C2 C1 SING N N 22 U9B C11 C12 SING Y N 23 U9B C1 N1 SING N N 24 U9B C1 H5 SING N N 25 U9B C1 H4 SING N N 26 U9B C2 H7 SING N N 27 U9B C2 H6 SING N N 28 U9B C7 H12 SING N N 29 U9B C7 H13 SING N N 30 U9B C8 H15 SING N N 31 U9B C8 H16 SING N N 32 U9B C15 H23 SING N N 33 U9B C15 H22 SING N N 34 U9B C16 H24 SING N N 35 U9B C16 H25 SING N N 36 U9B N1 H3 SING N N 37 U9B N1 H1 SING N N 38 U9B N1 H2 SING N N 39 U9B C3 H9 SING N N 40 U9B C3 H8 SING N N 41 U9B C4 H11 SING N N 42 U9B C4 H10 SING N N 43 U9B O1 H26 SING N N 44 U9B N2 H14 SING N N 45 U9B C10 H17 SING N N 46 U9B C11 H18 SING N N 47 U9B C12 H19 SING N N 48 U9B C13 H20 SING N N 49 U9B C14 H21 SING N N 50 U9B O3 H27 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9B InChI InChI 1.03 "InChI=1S/C16H25N2O4P/c17-9-5-4-8-16(15(19)20)13-18(10-11-23(16,21)22)12-14-6-2-1-3-7-14/h1-3,6-7H,4-5,8-13,17H2,(H,19,20)(H,21,22)/p+2/t16-/m0/s1" U9B InChIKey InChI 1.03 ZNSVXALGZJWZDW-INIZCTEOSA-P U9B SMILES_CANONICAL CACTVS 3.385 "[NH3+]CCCC[C@]1(C[NH+](CC[P]1(O)=O)Cc2ccccc2)C(O)=O" U9B SMILES CACTVS 3.385 "[NH3+]CCCC[C]1(C[NH+](CC[P]1(O)=O)Cc2ccccc2)C(O)=O" U9B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[N@@H+]2CCP(=O)([C@](C2)(CCCC[NH3+])C(=O)O)O" U9B SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[NH+]2CCP(=O)(C(C2)(CCCC[NH3+])C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id U9B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(1~{R},3~{S})-3-carboxy-4-oxidanyl-4-oxidanylidene-1-(phenylmethyl)-1,4$l^{5}-azaphosphinan-1-ium-3-yl]butylazanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id U9B _pdbx_chem_comp_synonyms.name "4-[(1~{R},3~{S})-3-carboxy-4-oxidanyl-4-oxidanylidene-1-(phenylmethyl)-1,4$l^{5}-azaphosphinan-1-ium-3-yl]butylazanium" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9B "Create component" 2021-02-04 PDBE U9B "Initial release" 2021-04-07 RCSB ##