data_U9D # _chem_comp.id U9D _chem_comp.name "4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C9 H18 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 206.236 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9D C4 C4 C 0 1 N N N 31.759 7.524 38.679 -0.257 1.310 -0.302 C4 U9D 1 U9D C5 C5 C 0 1 N N S 32.395 6.958 40.044 -1.286 0.272 0.154 C5 U9D 2 U9D O5 O5 O 0 1 N N N 31.335 6.777 41.075 -0.936 -1.008 -0.377 O5 U9D 3 U9D C6 C6 C 0 1 N N N 33.485 7.914 40.587 -2.673 0.672 -0.351 C6 U9D 4 U9D O6 O6 O 0 1 N N N 34.113 7.253 41.686 -3.649 -0.232 0.171 O6 U9D 5 U9D C6M C6M C 0 1 N N N ? ? ? -4.986 0.054 -0.243 C6M U9D 6 U9D C3 C3 C 0 1 N N S 30.671 6.547 38.203 1.137 0.872 0.156 C3 U9D 7 U9D O3 O3 O 0 1 N N N 30.108 7.021 37.007 2.112 1.797 -0.328 O3 U9D 8 U9D C3M C3M C 0 1 N N N 29.818 5.913 35.868 2.375 2.884 0.563 C3M U9D 9 U9D C2 C2 C 0 1 N N R 29.578 6.376 39.350 1.432 -0.523 -0.404 C2 U9D 10 U9D O2 O2 O 0 1 N N N 28.565 5.520 38.969 2.700 -0.973 0.076 O2 U9D 11 U9D C2M C2M C 0 1 N N N 27.194 6.096 38.534 3.383 -1.852 -0.820 C2M U9D 12 U9D C1 C1 C 0 1 N N S 30.237 5.858 40.658 0.338 -1.490 0.056 C1 U9D 13 U9D O1 O1 O 0 1 N N N 29.621 4.514 41.063 0.353 -1.584 1.482 O1 U9D 14 U9D H101 H101 H 0 0 N N N 31.315 8.514 38.860 -0.276 1.388 -1.389 H101 U9D 15 U9D H102 H102 H 0 0 N N N 32.543 7.608 37.912 -0.498 2.278 0.138 H102 U9D 16 U9D H11 H11 H 0 1 N N N 32.859 5.986 39.823 -1.295 0.223 1.243 H11 U9D 17 U9D H131 H131 H 0 0 N N N 34.225 8.127 39.802 -2.902 1.685 -0.020 H131 U9D 18 U9D H132 H132 H 0 0 N N N 33.027 8.856 40.925 -2.688 0.633 -1.441 H132 U9D 19 U9D H151 H151 H 0 0 N N N ? ? ? -5.049 0.003 -1.330 H151 U9D 20 U9D H152 H152 H 0 0 N N N ? ? ? -5.667 -0.676 0.195 H152 U9D 21 U9D H153 H153 H 0 0 N N N ? ? ? -5.264 1.054 0.090 H153 U9D 22 U9D H16 H16 H 0 1 N N N 31.137 5.565 38.038 1.171 0.843 1.245 H16 U9D 23 U9D H181 H181 H 0 0 N N N 29.380 6.401 34.984 1.456 3.445 0.733 H181 U9D 24 U9D H182 H182 H 0 0 N N N 30.761 5.422 35.586 2.744 2.495 1.512 H182 U9D 25 U9D H183 H183 H 0 0 N N N 29.115 5.162 36.258 3.125 3.541 0.123 H183 U9D 26 U9D H19 H19 H 0 1 N N N 29.166 7.375 39.558 1.449 -0.482 -1.493 H19 U9D 27 U9D H1B1 H1B1 H 0 0 N N N 26.517 5.271 38.268 2.772 -2.738 -0.995 H1B1 U9D 28 U9D H1B2 H1B2 H 0 0 N N N 26.759 6.674 39.363 3.560 -1.340 -1.766 H1B2 U9D 29 U9D H1B3 H1B3 H 0 0 N N N 27.332 6.753 37.662 4.336 -2.148 -0.382 H1B3 U9D 30 U9D H1C H1C H 0 1 N N N 29.508 6.407 41.273 0.519 -2.475 -0.375 H1C U9D 31 U9D H2 H2 H 0 1 N Y N 28.899 4.308 40.481 -0.316 -2.181 1.844 H2 U9D 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9D C4 C5 SING N N 1 U9D C4 C3 SING N N 2 U9D C4 H101 SING N N 3 U9D C4 H102 SING N N 4 U9D C5 O5 SING N N 5 U9D C5 C6 SING N N 6 U9D C5 H11 SING N N 7 U9D O5 C1 SING N N 8 U9D C6 O6 SING N N 9 U9D C6 H131 SING N N 10 U9D C6 H132 SING N N 11 U9D O6 C6M SING N N 12 U9D C6M H151 SING N N 13 U9D C6M H152 SING N N 14 U9D C6M H153 SING N N 15 U9D C3 O3 SING N N 16 U9D C3 C2 SING N N 17 U9D C3 H16 SING N N 18 U9D O3 C3M SING N N 19 U9D C3M H181 SING N N 20 U9D C3M H182 SING N N 21 U9D C3M H183 SING N N 22 U9D C2 O2 SING N N 23 U9D C2 C1 SING N N 24 U9D C2 H19 SING N N 25 U9D O2 C2M SING N N 26 U9D C2M H1B1 SING N N 27 U9D C2M H1B2 SING N N 28 U9D C2M H1B3 SING N N 29 U9D C1 O1 SING N N 30 U9D C1 H1C SING N N 31 U9D O1 H2 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9D SMILES ACDLabs 12.01 "C1C(OC(C(C1OC)OC)O)COC" U9D InChI InChI 1.03 "InChI=1S/C9H18O5/c1-11-5-6-4-7(12-2)8(13-3)9(10)14-6/h6-10H,4-5H2,1-3H3/t6-,7-,8+,9?/m0/s1" U9D InChIKey InChI 1.03 VGIKFUPOZBZSKX-VTBDLZGYSA-N U9D SMILES_CANONICAL CACTVS 3.385 "COC[C@@H]1C[C@H](OC)[C@@H](OC)[C@@H](O)O1" U9D SMILES CACTVS 3.385 "COC[CH]1C[CH](OC)[CH](OC)[CH](O)O1" U9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC[C@@H]1C[C@@H]([C@H](C(O1)O)OC)OC" U9D SMILES "OpenEye OEToolkits" 2.0.7 "COCC1CC(C(C(O1)O)OC)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U9D "SYSTEMATIC NAME" ACDLabs 12.01 "4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose" U9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R},4~{S},6~{S})-3,4-dimethoxy-6-(methoxymethyl)oxan-2-ol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support U9D "CARBOHYDRATE ISOMER" D PDB ? U9D "CARBOHYDRATE RING" pyranose PDB ? U9D "CARBOHYDRATE ANOMER" alpha PDB ? U9D "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9D "Create component" 2020-05-05 RCSB U9D "Initial release" 2020-07-29 RCSB ##