data_U9J # _chem_comp.id U9J _chem_comp.name "(2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol" _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H16 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 224.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9J O4 O4 O 0 1 N N N 25.768 3.016 59.438 0.378 0.905 1.849 O4 U9J 1 U9J C4 C4 C 0 1 N N S 26.412 3.005 60.726 0.385 -0.326 1.123 C4 U9J 2 U9J C5 C5 C 0 1 N N R 26.954 1.517 61.053 1.173 -0.149 -0.178 C5 U9J 3 U9J O5 O5 O 0 1 N N N 25.948 0.761 61.760 0.527 0.831 -0.994 O5 U9J 4 U9J C6 C6 C 0 1 N N N 27.311 0.636 59.833 2.595 0.314 0.146 C6 U9J 5 U9J O6A O6A O 0 1 N N N 28.510 0.287 59.670 3.270 -0.706 0.885 O6A U9J 6 U9J O6B O6B O 0 1 N N N 26.406 0.258 59.008 3.301 0.569 -1.069 O6B U9J 7 U9J C3 C3 C 0 1 N N S 25.375 3.546 61.829 -1.054 -0.731 0.788 C3 U9J 8 U9J O3 O3 O 0 1 N N N 25.534 4.933 62.011 -1.052 -1.993 0.119 O3 U9J 9 U9J C3M C3M C 0 1 N N N 24.310 5.659 61.801 -2.227 -2.774 0.348 C3M U9J 10 U9J C2 C2 C 0 1 N N R 25.568 2.848 63.197 -1.672 0.332 -0.125 C2 U9J 11 U9J O2 O2 O 0 1 N N N 24.647 3.359 64.131 -1.733 1.580 0.567 O2 U9J 12 U9J C2M C2M C 0 1 N N N 25.335 4.280 65.292 -2.819 2.417 0.163 C2M U9J 13 U9J C1 C1 C 0 1 N N R 25.387 1.324 62.982 -0.805 0.484 -1.378 C1 U9J 14 U9J O1 O1 O 0 1 N Y N 25.929 0.614 64.108 -0.788 -0.750 -2.098 O1 U9J 15 U9J H4 H4 H 0 1 N N N 27.279 3.682 60.718 0.851 -1.104 1.728 H4 U9J 16 U9J H5 H5 H 0 1 N N N 27.851 1.621 61.681 1.212 -1.098 -0.711 H5 U9J 17 U9J H61 H61 H 0 1 N N N 27.488 1.539 59.230 2.553 1.226 0.741 H61 U9J 18 U9J H6O H6O H 0 1 N N N 28.581 -0.247 58.887 3.344 -1.548 0.416 H6O U9J 19 U9J H65 H65 H 0 1 N N N 26.801 -0.272 58.325 4.212 0.866 -0.940 H65 U9J 20 U9J H3 H3 H 0 1 N N N 24.360 3.324 61.468 -1.635 -0.806 1.707 H3 U9J 21 U9J H681 H681 H 0 0 N N N 24.489 6.733 61.955 -2.148 -3.717 -0.194 H681 U9J 22 U9J H682 H682 H 0 0 N N N 23.955 5.490 60.773 -2.328 -2.975 1.414 H682 U9J 23 U9J H683 H683 H 0 0 N N N 23.549 5.308 62.514 -3.102 -2.226 -0.003 H683 U9J 24 U9J H4O H4O H 0 1 N N N 26.598 3.030 63.538 -2.678 0.025 -0.413 H4O U9J 25 U9J H6B1 H6B1 H 0 0 N N N 24.558 4.642 65.982 -2.727 2.643 -0.899 H6B1 U9J 26 U9J H6B2 H6B2 H 0 0 N N N 26.069 3.679 65.849 -3.762 1.902 0.345 H6B2 U9J 27 U9J H6B3 H6B3 H 0 0 N N N 25.841 5.139 64.827 -2.795 3.345 0.735 H6B3 U9J 28 U9J H1O H1O H 0 1 N N N 24.303 1.141 62.962 -1.216 1.270 -2.012 H1O U9J 29 U9J H6 H6 H 0 1 N Y N 25.451 3.891 59.249 1.248 1.175 2.172 H6 U9J 30 U9J HO1 HO1 H 0 1 N Y N 25.570 0.972 64.911 -0.255 -0.727 -2.905 HO1 U9J 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9J O4 C4 SING N N 1 U9J C4 C5 SING N N 2 U9J C4 C3 SING N N 3 U9J C4 H4 SING N N 4 U9J C5 O5 SING N N 5 U9J C5 C6 SING N N 6 U9J C5 H5 SING N N 7 U9J O5 C1 SING N N 8 U9J C6 O6A SING N N 9 U9J C6 O6B SING N N 10 U9J C6 H61 SING N N 11 U9J O6A H6O SING N N 12 U9J O6B H65 SING N N 13 U9J C3 O3 SING N N 14 U9J C3 C2 SING N N 15 U9J C3 H3 SING N N 16 U9J O3 C3M SING N N 17 U9J C3M H681 SING N N 18 U9J C3M H682 SING N N 19 U9J C3M H683 SING N N 20 U9J C2 O2 SING N N 21 U9J C2 C1 SING N N 22 U9J C2 H4O SING N N 23 U9J O2 C2M SING N N 24 U9J C2M H6B1 SING N N 25 U9J C2M H6B2 SING N N 26 U9J C2M H6B3 SING N N 27 U9J C1 O1 SING N N 28 U9J C1 H1O SING N N 29 U9J O4 H6 SING N N 30 U9J O1 HO1 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9J SMILES ACDLabs 12.01 "OC1C(OC(C(C1OC)OC)O)C(O)O" U9J InChI InChI 1.03 "InChI=1S/C8H16O7/c1-13-4-3(9)5(7(10)11)15-8(12)6(4)14-2/h3-12H,1-2H3/t3-,4-,5+,6+,8+/m0/s1" U9J InChIKey InChI 1.03 ABSMSNIBELWCOB-XLIHNKEPSA-N U9J SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@H](O)O[C@@H](C(O)O)[C@@H](O)[C@@H]1OC" U9J SMILES CACTVS 3.385 "CO[CH]1[CH](O)O[CH](C(O)O)[CH](O)[CH]1OC" U9J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H]([C@@H](O[C@H]([C@@H]1OC)O)C(O)O)O" U9J SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(OC(C1OC)O)C(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U9J "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol (non-preferred name)" U9J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{S},6~{R})-6-[bis(oxidanyl)methyl]-3,4-dimethoxy-oxane-2,5-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support U9J "CARBOHYDRATE ISOMER" L PDB ? U9J "CARBOHYDRATE RING" pyranose PDB ? U9J "CARBOHYDRATE ANOMER" alpha PDB ? U9J "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9J "Create component" 2020-05-05 RCSB U9J "Modify component atom id" 2020-07-17 RCSB U9J "Initial release" 2020-07-29 RCSB ##