data_U9K # _chem_comp.id U9K _chem_comp.name "(1R,3S)-3-(4-ammoniobutyl)-1-(4-fluoro-2-(1-methyl-1H-imidazol-5-yl)benzyl)-1,4-azaphosphinan-1-ium-3-carboxylate 4,4-dioxide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 F N4 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[(1~{R},3~{S})-3-carboxy-1-[[4-fluoranyl-2-(3-methylimidazol-4-yl)phenyl]methyl]-4-oxidanyl-4-oxidanylidene-1,4$l^{5}-azaphosphinan-1-ium-3-yl]butylazanium" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2021-02-07 _chem_comp.pdbx_modified_date 2021-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.449 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NEU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9K N1 N1 N 0 1 Y N N -37.555 -15.370 15.148 1.571 2.459 -0.060 N1 U9K 1 U9K N2 N2 N 0 1 Y N N -35.957 -14.412 16.364 0.747 2.629 -2.053 N2 U9K 2 U9K C3 C1 C 0 1 Y N N -35.731 -14.131 15.038 1.610 1.606 -2.080 C3 U9K 3 U9K N4 N3 N 1 1 N N N -32.461 -13.368 6.837 -4.322 4.458 1.095 N4 U9K 4 U9K C6 C2 C 0 1 Y N N -37.353 -13.437 12.234 4.287 0.882 0.285 C6 U9K 5 U9K C7 C3 C 0 1 Y N N -37.487 -13.319 10.873 5.214 -0.058 0.692 C7 U9K 6 U9K C9 C4 C 0 1 Y N N -36.704 -15.534 10.557 3.874 -1.809 -0.258 C9 U9K 7 U9K C10 C5 C 0 1 Y N N -36.550 -15.710 11.939 2.943 -0.879 -0.675 C10 U9K 8 U9K C11 C6 C 0 1 N N N -36.002 -17.018 12.479 1.715 -1.324 -1.425 C11 U9K 9 U9K C12 C7 C 0 1 N N N -34.026 -18.560 12.675 0.741 -2.202 0.571 C12 U9K 10 U9K C13 C8 C 0 1 N N N -32.690 -18.940 12.036 -0.199 -1.832 1.731 C13 U9K 11 U9K C14 C9 C 0 1 N N S -32.316 -16.202 11.697 -1.897 -1.064 -0.550 C14 U9K 12 U9K C15 C10 C 0 1 N N N -32.557 -15.987 10.171 -1.810 0.451 -0.356 C15 U9K 13 U9K C16 C11 C 0 1 N N N -33.081 -14.634 9.692 -3.101 0.958 0.291 C16 U9K 14 U9K C18 C12 C 0 1 N N N -33.746 -13.402 7.599 -4.356 2.992 1.018 C18 U9K 15 U9K C19 C13 C 0 1 N N N -31.470 -15.017 12.188 -3.146 -1.412 -1.319 C19 U9K 16 U9K C20 C14 C 0 1 N N N -33.647 -16.147 12.471 -0.658 -1.569 -1.307 C20 U9K 17 U9K C1 C15 C 0 1 N N N -38.742 -16.136 14.799 1.839 2.717 1.357 C1 U9K 18 U9K C2 C16 C 0 1 Y N N -37.058 -15.139 16.396 0.721 3.146 -0.854 C2 U9K 19 U9K C4 C17 C 0 1 Y N N -36.690 -14.723 14.256 2.142 1.475 -0.835 C4 U9K 20 U9K C5 C18 C 0 1 Y N N -36.876 -14.636 12.793 3.141 0.475 -0.401 C5 U9K 21 U9K F1 F1 F 0 1 N N N -37.957 -12.142 10.368 6.324 0.333 1.356 F1 U9K 22 U9K C8 C19 C 0 1 Y N N -37.183 -14.343 10.017 5.007 -1.401 0.421 C8 U9K 23 U9K N3 N4 N 1 1 N N N -34.557 -17.278 12.104 0.548 -1.262 -0.535 N3 U9K 24 U9K P1 P1 P 0 1 N N N -31.355 -17.714 12.076 -1.913 -1.903 1.081 P1 U9K 25 U9K O1 O1 O 0 1 N N N -30.931 -17.652 13.486 -2.373 -3.436 0.907 O1 U9K 26 U9K O2 O2 O 0 1 N N N -30.375 -18.042 11.020 -2.833 -1.199 2.003 O2 U9K 27 U9K C17 C20 C 0 1 N N N -33.915 -14.677 8.413 -3.065 2.485 0.371 C17 U9K 28 U9K O3 O3 O 0 1 N N N -30.522 -14.659 11.534 -3.101 -1.536 -2.520 O3 U9K 29 U9K O4 O4 O 0 1 N N N -31.761 -14.490 13.257 -4.308 -1.584 -0.669 O4 U9K 30 U9K H5 H1 H 0 1 N N N -34.915 -13.530 14.665 1.837 0.990 -2.938 H5 U9K 31 U9K H24 H2 H 0 1 N N N -32.401 -12.513 6.322 -5.174 4.792 1.521 H24 U9K 32 U9K H25 H3 H 0 1 N N N -31.693 -13.427 7.475 -3.531 4.748 1.651 H25 U9K 33 U9K H26 H4 H 0 1 N N N -32.428 -14.141 6.204 -4.239 4.842 0.165 H26 U9K 34 U9K H6 H5 H 0 1 N N N -37.614 -12.609 12.876 4.445 1.928 0.500 H6 U9K 35 U9K H8 H6 H 0 1 N N N -36.444 -16.345 9.892 3.720 -2.856 -0.471 H8 U9K 36 U9K H9 H7 H 0 1 N N N -36.077 -16.999 13.576 1.554 -0.669 -2.282 H9 U9K 37 U9K H10 H8 H 0 1 N N N -36.616 -17.841 12.084 1.852 -2.349 -1.772 H10 U9K 38 U9K H12 H9 H 0 1 N N N -34.754 -19.364 12.489 1.775 -2.154 0.912 H12 U9K 39 U9K H13 H10 H 0 1 N N N -33.883 -18.438 13.759 0.517 -3.213 0.231 H13 U9K 40 U9K H15 H11 H 0 1 N N N -32.887 -19.176 10.980 -0.081 -2.546 2.546 H15 U9K 41 U9K H14 H12 H 0 1 N N N -32.324 -19.840 12.551 0.024 -0.825 2.082 H14 U9K 42 U9K H17 H13 H 0 1 N N N -33.283 -16.748 9.848 -0.963 0.687 0.289 H17 U9K 43 U9K H16 H14 H 0 1 N N N -31.596 -16.159 9.665 -1.675 0.934 -1.324 H16 U9K 44 U9K H19 H15 H 0 1 N N N -32.216 -13.978 9.513 -3.955 0.645 -0.309 H19 U9K 45 U9K H18 H16 H 0 1 N N N -33.705 -14.208 10.491 -3.191 0.543 1.295 H18 U9K 46 U9K H23 H17 H 0 1 N N N -33.771 -12.542 8.284 -4.446 2.577 2.022 H23 U9K 47 U9K H22 H18 H 0 1 N N N -34.580 -13.327 6.886 -5.210 2.679 0.418 H22 U9K 48 U9K H28 H19 H 0 1 N N N -33.433 -16.199 13.549 -0.733 -2.647 -1.449 H28 U9K 49 U9K H27 H20 H 0 1 N N N -34.152 -15.197 12.242 -0.602 -1.078 -2.279 H27 U9K 50 U9K H1 H21 H 0 1 N N N -39.213 -16.522 15.715 1.090 2.211 1.966 H1 U9K 51 U9K H2 H22 H 0 1 N N N -39.453 -15.488 14.266 2.830 2.341 1.613 H2 U9K 52 U9K H3 H23 H 0 1 N N N -38.457 -16.978 14.151 1.797 3.789 1.545 H3 U9K 53 U9K H4 H24 H 0 1 N N N -37.512 -15.508 17.304 0.118 3.988 -0.547 H4 U9K 54 U9K H7 H25 H 0 1 N N N -37.311 -14.230 8.951 5.732 -2.133 0.745 H7 U9K 55 U9K H11 H26 H 0 1 N N N -34.528 -17.367 11.108 0.470 -0.327 -0.162 H11 U9K 56 U9K H29 H27 H 0 1 N N N -30.003 -17.847 13.547 -2.363 -3.946 1.729 H29 U9K 57 U9K H21 H28 H 0 1 N N N -34.976 -14.793 8.681 -2.211 2.798 0.971 H21 U9K 58 U9K H20 H29 H 0 1 N N N -33.594 -15.536 7.805 -2.975 2.900 -0.633 H20 U9K 59 U9K H30 H30 H 0 1 N N N -31.139 -13.799 13.450 -5.082 -1.806 -1.204 H30 U9K 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9K N4 C18 SING N N 1 U9K C18 C17 SING N N 2 U9K C17 C16 SING N N 3 U9K C16 C15 SING N N 4 U9K C8 C9 DOUB Y N 5 U9K C8 C7 SING Y N 6 U9K C15 C14 SING N N 7 U9K F1 C7 SING N N 8 U9K C9 C10 SING Y N 9 U9K C7 C6 DOUB Y N 10 U9K O2 P1 DOUB N N 11 U9K O3 C19 DOUB N N 12 U9K C14 P1 SING N N 13 U9K C14 C19 SING N N 14 U9K C14 C20 SING N N 15 U9K C10 C11 SING N N 16 U9K C10 C5 DOUB Y N 17 U9K C13 P1 SING N N 18 U9K C13 C12 SING N N 19 U9K P1 O1 SING N N 20 U9K N3 C20 SING N N 21 U9K N3 C11 SING N N 22 U9K N3 C12 SING N N 23 U9K C19 O4 SING N N 24 U9K C6 C5 SING Y N 25 U9K C5 C4 SING N N 26 U9K C4 C3 DOUB Y N 27 U9K C4 N1 SING Y N 28 U9K C1 N1 SING N N 29 U9K C3 N2 SING Y N 30 U9K N1 C2 SING Y N 31 U9K N2 C2 DOUB Y N 32 U9K C3 H5 SING N N 33 U9K N4 H24 SING N N 34 U9K N4 H25 SING N N 35 U9K N4 H26 SING N N 36 U9K C6 H6 SING N N 37 U9K C9 H8 SING N N 38 U9K C11 H9 SING N N 39 U9K C11 H10 SING N N 40 U9K C12 H12 SING N N 41 U9K C12 H13 SING N N 42 U9K C13 H15 SING N N 43 U9K C13 H14 SING N N 44 U9K C15 H17 SING N N 45 U9K C15 H16 SING N N 46 U9K C16 H19 SING N N 47 U9K C16 H18 SING N N 48 U9K C18 H23 SING N N 49 U9K C18 H22 SING N N 50 U9K C20 H28 SING N N 51 U9K C20 H27 SING N N 52 U9K C1 H1 SING N N 53 U9K C1 H2 SING N N 54 U9K C1 H3 SING N N 55 U9K C2 H4 SING N N 56 U9K C8 H7 SING N N 57 U9K N3 H11 SING N N 58 U9K O1 H29 SING N N 59 U9K C17 H21 SING N N 60 U9K C17 H20 SING N N 61 U9K O4 H30 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9K InChI InChI 1.03 "InChI=1S/C20H28FN4O4P/c1-24-14-23-11-18(24)17-10-16(21)5-4-15(17)12-25-8-9-30(28,29)20(13-25,19(26)27)6-2-3-7-22/h4-5,10-11,14H,2-3,6-9,12-13,22H2,1H3,(H,26,27)(H,28,29)/p+2/t20-/m0/s1" U9K InChIKey InChI 1.03 ZBWZIBATIOSFOY-FQEVSTJZSA-P U9K SMILES_CANONICAL CACTVS 3.385 "Cn1cncc1c2cc(F)ccc2C[NH+]3CC[P](O)(=O)[C@@](CCCC[NH3+])(C3)C(O)=O" U9K SMILES CACTVS 3.385 "Cn1cncc1c2cc(F)ccc2C[NH+]3CC[P](O)(=O)[C](CCCC[NH3+])(C3)C(O)=O" U9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cncc1c2cc(ccc2C[N@@H+]3CCP(=O)([C@](C3)(CCCC[NH3+])C(=O)O)O)F" U9K SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cncc1c2cc(ccc2C[NH+]3CCP(=O)(C(C3)(CCCC[NH3+])C(=O)O)O)F" # _pdbx_chem_comp_identifier.comp_id U9K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(1~{R},3~{S})-3-carboxy-1-[[4-fluoranyl-2-(3-methylimidazol-4-yl)phenyl]methyl]-4-oxidanyl-4-oxidanylidene-1,4$l^{5}-azaphosphinan-1-ium-3-yl]butylazanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id U9K _pdbx_chem_comp_synonyms.name "4-[(1~{R},3~{S})-3-carboxy-1-[[4-fluoranyl-2-(3-methylimidazol-4-yl)phenyl]methyl]-4-oxidanyl-4-oxidanylidene-1,4$l^{5}-azaphosphinan-1-ium-3-yl]butylazanium" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9K "Create component" 2021-02-07 PDBE U9K "Initial release" 2021-04-07 RCSB ##