data_U9O # _chem_comp.id U9O _chem_comp.name 5-azanyl-1-oxidanyl-pentan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-31 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 117.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q7R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9O N N1 N 0 1 N N N N N N 181.267 176.237 114.421 3.839 0.384 -0.030 N U9O 1 U9O C C1 C 0 1 N N N N N N 182.038 177.817 120.212 -2.385 -0.743 0.016 C U9O 2 U9O O O1 O 0 1 N N N N N N 180.662 176.243 119.096 -1.063 1.206 -0.023 O U9O 3 U9O C1 C2 C 0 1 N N N N N N 181.685 176.904 119.078 -1.074 -0.001 -0.002 C1 U9O 4 U9O C2 C3 C 0 1 N N N N N N 182.624 176.798 117.898 0.225 -0.767 0.006 C2 U9O 5 U9O C3 C4 C 0 1 N N N N N N 181.939 176.088 116.734 1.396 0.217 -0.016 C3 U9O 6 U9O C4 C5 C 0 1 N N N N N N 181.669 177.042 115.581 2.714 -0.560 -0.009 C4 U9O 7 U9O O1 O2 O 0 1 N Y N N N N 181.685 177.842 121.873 -3.463 0.195 0.005 O1 U9O 8 U9O H1 H1 H 0 1 N N N N N N 181.082 176.839 113.645 3.782 1.033 0.741 H1 U9O 9 U9O H2 H2 H 0 1 N N N N N N 182.004 175.604 114.184 4.722 -0.105 -0.025 H2 U9O 10 U9O H4 H4 H 0 1 N N N N N N 183.138 177.817 120.194 -2.453 -1.384 -0.862 H4 U9O 11 U9O H5 H5 H 0 1 N N N N N N 181.666 178.793 119.867 -2.445 -1.354 0.917 H5 U9O 12 U9O H6 H6 H 0 1 N N N N N N 183.517 176.228 118.195 0.280 -1.378 0.906 H6 U9O 13 U9O H7 H7 H 0 1 N N N N N N 182.923 177.808 117.581 0.273 -1.409 -0.874 H7 U9O 14 U9O H8 H8 H 0 1 N N N N N N 180.983 175.669 117.083 1.340 0.829 -0.917 H8 U9O 15 U9O H9 H9 H 0 1 N N N N N N 182.588 175.274 116.380 1.348 0.859 0.863 H9 U9O 16 U9O H10 H10 H 0 1 N N N N N N 182.580 177.611 115.344 2.763 -1.202 -0.888 H10 U9O 17 U9O H11 H11 H 0 1 N N N N N N 180.862 177.738 115.852 2.770 -1.171 0.892 H11 U9O 18 U9O H12 H12 H 0 1 N N N N N N 182.097 178.598 122.273 -4.340 -0.213 0.016 H12 U9O 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9O N C4 SING N N 1 U9O C4 C3 SING N N 2 U9O C3 C2 SING N N 3 U9O C2 C1 SING N N 4 U9O C1 O DOUB N N 5 U9O C1 C SING N N 6 U9O C O1 SING N N 7 U9O N H1 SING N N 8 U9O N H2 SING N N 9 U9O C H4 SING N N 10 U9O C H5 SING N N 11 U9O C2 H6 SING N N 12 U9O C2 H7 SING N N 13 U9O C3 H8 SING N N 14 U9O C3 H9 SING N N 15 U9O C4 H10 SING N N 16 U9O C4 H11 SING N N 17 U9O O1 H12 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9O InChI InChI 1.06 "InChI=1S/C5H11NO2/c6-3-1-2-5(8)4-7/h7H,1-4,6H2" U9O InChIKey InChI 1.06 RXEZLKNFLIROMJ-UHFFFAOYSA-N U9O SMILES_CANONICAL CACTVS 3.385 "NCCCC(=O)CO" U9O SMILES CACTVS 3.385 "NCCCC(=O)CO" U9O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)CO)CN" U9O SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)CO)CN" # _pdbx_chem_comp_identifier.comp_id U9O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier 5-azanyl-1-oxidanyl-pentan-2-one # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9O "Create component" 2023-08-31 PDBE U9O "Initial release" 2024-02-21 RCSB U9O "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 U9O GLY None Crosslinker "Amino-acid backbone" C-terminal N C ? ? 2 U9O CYS None Crosslinker "Amino-acid side chain" "Any position" C SG ? ? 3 U9O CYS None Crosslinker "Amino-acid side chain" "Any position" C3 SG ? ? #