data_U9X # _chem_comp.id U9X _chem_comp.name "[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-5-[(2~{S})-3-methoxy-2-(2-methylpropyl)-5-oxidanylidene-2~{H}-pyrrol-1-yl]-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl] (2~{S},3~{S})-2-(dimethylamino)-3-methyl-pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H60 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-31 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 636.863 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U9X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CCU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U9X O7 O1 O 0 1 N N N N N N 16.027 16.800 20.850 -6.160 1.789 -1.259 O7 U9X 1 U9X C2 C1 C 0 1 N N N N N N 16.799 16.439 19.979 -5.625 1.244 -0.316 C2 U9X 2 U9X N3 N1 N 0 1 N N N N N N 17.340 17.433 19.299 -6.286 0.297 0.378 N3 U9X 3 U9X C34 C2 C 0 1 N N N N N N 18.042 17.283 18.098 -5.791 -0.447 1.384 C34 U9X 4 U9X O6 O2 O 0 1 N N N N N N 18.327 16.195 17.615 -4.653 -0.364 1.806 O6 U9X 5 U9X C33 C3 C 0 1 N N N N N N 18.398 18.599 17.635 -6.763 -1.336 1.885 C33 U9X 6 U9X C31 C4 C 0 1 N N N N N N 17.848 19.524 18.467 -7.921 -1.193 1.215 C31 U9X 7 U9X O5 O3 O 0 1 N N N N N N 17.944 20.872 18.395 -9.065 -1.876 1.423 O5 U9X 8 U9X C32 C5 C 0 1 N N N N N N 19.128 21.480 17.758 -9.054 -2.873 2.478 C32 U9X 9 U9X C4 C6 C 0 1 N N S N N N 17.063 18.885 19.632 -7.685 -0.112 0.183 C4 U9X 10 U9X C27 C7 C 0 1 N N N N N N 17.527 19.417 21.014 -7.886 -0.665 -1.230 C27 U9X 11 U9X C28 C8 C 0 1 N N N N N N 19.068 19.415 21.367 -7.079 -1.956 -1.391 C28 U9X 12 U9X C30 C9 C 0 1 N N N N N N 19.287 19.007 22.862 -7.512 -2.670 -2.673 C30 U9X 13 U9X C29 C10 C 0 1 N N N N N N 19.783 20.768 21.053 -5.589 -1.619 -1.472 C29 U9X 14 U9X C7 C11 C 0 1 N N N N N N 17.006 14.983 19.730 -4.220 1.622 0.075 C7 U9X 15 U9X C9 C12 C 0 1 N N N N N N 16.671 14.273 21.096 -3.702 2.707 -0.872 C9 U9X 16 U9X C12 C13 C 0 1 N N S N N N 18.034 13.831 21.747 -2.275 3.092 -0.475 C12 U9X 17 U9X C11 C14 C 0 1 N N N N N N 19.068 14.944 21.990 -1.802 4.261 -1.340 C11 U9X 18 U9X N1 N2 N 0 1 N N N N N N 18.776 12.769 21.000 -1.387 1.944 -0.677 N1 U9X 19 U9X C10 C15 C 0 1 N N N N N N 19.143 11.582 21.519 -0.246 1.842 0.034 C10 U9X 20 U9X O1 O4 O 0 1 N N N N N N 18.840 11.235 22.656 -0.007 2.640 0.915 O1 U9X 21 U9X C6 C16 C 0 1 N N S N N N 19.885 10.563 20.626 0.731 0.734 -0.265 C6 U9X 22 U9X C13 C17 C 0 1 N N N N N N 18.904 9.434 20.262 0.325 -0.526 0.502 C13 U9X 23 U9X C8 C18 C 0 1 N N N N N N 19.435 8.400 19.235 -1.069 -0.970 0.052 C8 U9X 24 U9X C5 C19 C 0 1 N N N N N N 19.473 9.031 17.860 -1.023 -1.375 -1.423 C5 U9X 25 U9X C1 C20 C 0 1 N N N N N N 18.613 7.098 19.257 -1.521 -2.163 0.895 C1 U9X 26 U9X N2 N3 N 0 1 N N N N N N 21.119 10.095 21.255 2.075 1.145 0.148 N2 U9X 27 U9X C14 C21 C 0 1 N N N N N N 22.034 10.898 21.815 3.156 0.645 -0.482 C14 U9X 28 U9X O4 O5 O 0 1 N N N N N N 22.029 12.162 21.745 3.016 -0.066 -1.455 O4 U9X 29 U9X C15 C22 C 0 1 N N S N N N 23.109 10.223 22.659 4.539 0.968 0.021 C15 U9X 30 U9X C16 C23 C 0 1 N N N N N N 22.738 9.865 24.091 4.938 2.369 -0.449 C16 U9X 31 U9X C17 C24 C 0 1 N N N N N N 23.845 9.300 25.003 4.050 3.409 0.236 C17 U9X 32 U9X C18 C25 C 0 1 N N N N N N 24.687 8.194 24.307 4.345 3.423 1.737 C18 U9X 33 U9X C3 C26 C 0 1 N N N N N N 23.264 8.877 26.336 4.337 4.792 -0.353 C3 U9X 34 U9X O2 O6 O 0 1 N N N N N N 24.181 11.197 22.823 5.484 -0.004 -0.499 O2 U9X 35 U9X C19 C27 C 0 1 N N N N N N 25.043 11.473 21.794 6.520 -0.330 0.290 C19 U9X 36 U9X O3 O7 O 0 1 N N N N N N 24.897 10.984 20.682 6.585 0.109 1.414 O3 U9X 37 U9X C20 C28 C 0 1 N N S N N N 26.157 12.431 22.298 7.602 -1.242 -0.226 C20 U9X 38 U9X N4 N4 N 0 1 N N N N N N 25.646 13.727 22.818 8.693 -1.312 0.755 N4 U9X 39 U9X C26 C29 C 0 1 N N N N N N 25.013 13.883 24.164 9.292 0.012 0.971 C26 U9X 40 U9X C25 C30 C 0 1 N N N N N N 24.922 14.489 21.773 8.227 -1.892 2.021 C25 U9X 41 U9X C21 C31 C 0 1 N N S N N N 27.253 11.615 23.134 7.026 -2.642 -0.448 C21 U9X 42 U9X C24 C32 C 0 1 N N N N N N 26.876 11.352 24.617 5.890 -2.570 -1.470 C24 U9X 43 U9X C22 C33 C 0 1 N N N N N N 27.917 10.346 22.493 8.125 -3.569 -0.972 C22 U9X 44 U9X C23 C34 C 0 1 N N N N N N 28.978 9.512 23.237 7.582 -4.996 -1.075 C23 U9X 45 U9X H1 H1 H 0 1 N N N N N N 19.004 18.817 16.768 -6.601 -2.035 2.692 H1 U9X 46 U9X H2 H2 H 0 1 N N N N N N 19.039 22.576 17.788 -8.299 -3.627 2.258 H2 U9X 47 U9X H3 H3 H 0 1 N N N N N N 20.035 21.171 18.299 -8.822 -2.394 3.429 H3 U9X 48 U9X H4 H4 H 0 1 N N N N N N 19.193 21.146 16.712 -10.034 -3.347 2.540 H4 U9X 49 U9X H5 H5 H 0 1 N N N N N N 15.991 19.095 19.506 -8.355 0.730 0.360 H5 U9X 50 U9X H6 H6 H 0 1 N N N N N N 17.182 20.459 21.089 -8.943 -0.875 -1.391 H6 U9X 51 U9X H7 H7 H 0 1 N N N N N N 17.022 18.808 21.778 -7.545 0.069 -1.959 H7 U9X 52 U9X H8 H8 H 0 1 N N N N N N 19.542 18.642 20.744 -7.259 -2.606 -0.535 H8 U9X 53 U9X H9 H9 H 0 1 N N N N N N 20.363 19.011 23.090 -7.332 -2.020 -3.529 H9 U9X 54 U9X H10 H10 H 0 1 N N N N N N 18.771 19.724 23.517 -6.937 -3.589 -2.788 H10 U9X 55 U9X H11 H11 H 0 1 N N N N N N 18.880 17.999 23.030 -8.573 -2.910 -2.615 H11 U9X 56 U9X H12 H12 H 0 1 N N N N N N 20.847 20.692 21.323 -5.413 -0.951 -2.316 H12 U9X 57 U9X H13 H13 H 0 1 N N N N N N 19.692 20.990 19.980 -5.276 -1.130 -0.550 H13 U9X 58 U9X H14 H14 H 0 1 N N N N N N 19.313 21.574 21.635 -5.016 -2.536 -1.610 H14 U9X 59 U9X H15 H15 H 0 1 N N N N N N 16.332 14.629 18.937 -4.216 2.000 1.097 H15 U9X 60 U9X H16 H16 H 0 1 N N N N N N 18.049 14.787 19.440 -3.576 0.745 0.009 H16 U9X 61 U9X H17 H17 H 0 1 N N N N N N 16.145 14.972 21.763 -3.705 2.330 -1.894 H17 U9X 62 U9X H18 H18 H 0 1 N N N N N N 16.038 13.392 20.916 -4.346 3.585 -0.806 H18 U9X 63 U9X H19 H19 H 0 1 N N N N N N 17.782 13.416 22.734 -2.256 3.385 0.575 H19 U9X 64 U9X H20 H20 H 0 1 N N N N N N 18.595 15.771 22.540 -1.821 3.968 -2.389 H20 U9X 65 U9X H21 H21 H 0 1 N N N N N N 19.906 14.543 22.579 -2.464 5.115 -1.190 H21 U9X 66 U9X H22 H22 H 0 1 N N N N N N 19.443 15.314 21.024 -0.786 4.535 -1.057 H22 U9X 67 U9X H23 H23 H 0 1 N N N N N N 19.017 12.954 20.047 -1.619 1.259 -1.323 H23 U9X 68 U9X H24 H24 H 0 1 N N N N N N 20.149 11.080 19.692 0.728 0.526 -1.335 H24 U9X 69 U9X H25 H25 H 0 1 N N N N N N 17.997 9.894 19.843 1.042 -1.321 0.300 H25 U9X 70 U9X H26 H26 H 0 1 N N N N N N 18.648 8.895 21.186 0.310 -0.312 1.571 H26 U9X 71 U9X H27 H27 H 0 1 N N N N N N 20.467 8.148 19.522 -1.771 -0.146 0.181 H27 U9X 72 U9X H28 H28 H 0 1 N N N N N N 20.070 9.954 17.896 -0.372 -2.241 -1.542 H28 U9X 73 U9X H29 H29 H 0 1 N N N N N N 19.928 8.328 17.147 -2.028 -1.627 -1.762 H29 U9X 74 U9X H30 H30 H 0 1 N N N N N N 18.449 9.269 17.537 -0.637 -0.546 -2.016 H30 U9X 75 U9X H31 H31 H 0 1 N N N N N N 18.615 6.679 20.274 -1.553 -1.875 1.946 H31 U9X 76 U9X H32 H32 H 0 1 N N N N N N 17.578 7.313 18.951 -2.514 -2.479 0.574 H32 U9X 77 U9X H33 H33 H 0 1 N N N N N N 19.058 6.372 18.561 -0.818 -2.986 0.766 H33 U9X 78 U9X H34 H34 H 0 1 N N N N N N 21.292 9.110 21.268 2.188 1.777 0.876 H34 U9X 79 U9X H35 H35 H 0 1 N N N N N N 23.478 9.327 22.138 4.547 0.935 1.110 H35 U9X 80 U9X H36 H36 H 0 1 N N N N N N 22.355 10.779 24.568 5.981 2.555 -0.191 H36 U9X 81 U9X H37 H37 H 0 1 N N N N N N 21.937 9.113 24.044 4.813 2.438 -1.530 H37 U9X 82 U9X H38 H38 H 0 1 N N N N N N 24.535 10.132 25.207 3.002 3.155 0.073 H38 U9X 83 U9X H39 H39 H 0 1 N N N N N N 25.458 7.829 25.001 3.783 4.228 2.210 H39 U9X 84 U9X H40 H40 H 0 1 N N N N N N 24.030 7.361 24.018 4.050 2.469 2.174 H40 U9X 85 U9X H41 H41 H 0 1 N N N N N N 25.168 8.610 23.410 5.411 3.581 1.896 H41 U9X 86 U9X H42 H42 H 0 1 N N N N N N 24.065 8.476 26.975 4.127 4.782 -1.423 H42 U9X 87 U9X H43 H43 H 0 1 N N N N N N 22.803 9.747 26.827 3.704 5.533 0.135 H43 U9X 88 U9X H44 H44 H 0 1 N N N N N N 22.502 8.101 26.174 5.385 5.045 -0.191 H44 U9X 89 U9X H45 H45 H 0 1 N N N N N N 26.697 12.704 21.379 7.986 -0.854 -1.170 H45 U9X 90 U9X H47 H47 H 0 1 N N N N N N 25.581 13.303 24.906 8.560 0.670 1.441 H47 U9X 91 U9X H48 H48 H 0 1 N N N N N N 25.015 14.945 24.449 10.163 -0.084 1.620 H48 U9X 92 U9X H49 H49 H 0 1 N N N N N N 23.977 13.516 24.127 9.597 0.434 0.013 H49 U9X 93 U9X H50 H50 H 0 1 N N N N N N 24.561 15.438 22.195 7.735 -2.844 1.825 H50 U9X 94 U9X H51 H51 H 0 1 N N N N N N 25.602 14.696 20.933 9.078 -2.052 2.683 H51 U9X 95 U9X H52 H52 H 0 1 N N N N N N 24.066 13.898 21.415 7.521 -1.209 2.495 H52 U9X 96 U9X H53 H53 H 0 1 N N N N N N 28.088 12.327 23.206 6.642 -3.031 0.495 H53 U9X 97 U9X H54 H54 H 0 1 N N N N N N 27.684 10.789 25.107 6.273 -2.182 -2.413 H54 U9X 98 U9X H55 H55 H 0 1 N N N N N N 26.732 12.312 25.134 5.479 -3.568 -1.628 H55 U9X 99 U9X H56 H56 H 0 1 N N N N N N 25.944 10.769 24.660 5.107 -1.910 -1.096 H56 U9X 100 U9X H57 H57 H 0 1 N N N N N N 27.094 9.655 22.256 8.447 -3.230 -1.957 H57 U9X 101 U9X H58 H58 H 0 1 N N N N N N 28.391 10.685 21.560 8.972 -3.551 -0.287 H58 U9X 102 U9X H59 H59 H 0 1 N N N N N N 29.301 8.675 22.600 6.735 -5.014 -1.760 H59 U9X 103 U9X H60 H60 H 0 1 N N N N N N 29.844 10.148 23.474 8.365 -5.656 -1.449 H60 U9X 104 U9X H61 H61 H 0 1 N N N N N N 28.547 9.118 24.169 7.261 -5.334 -0.090 H61 U9X 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U9X O6 C34 DOUB N N 1 U9X C33 C34 SING N N 2 U9X C33 C31 DOUB N N 3 U9X C32 O5 SING N N 4 U9X C5 C8 SING N N 5 U9X C34 N3 SING N N 6 U9X O5 C31 SING N N 7 U9X C31 C4 SING N N 8 U9X C8 C1 SING N N 9 U9X C8 C13 SING N N 10 U9X N3 C4 SING N N 11 U9X N3 C2 SING N N 12 U9X C4 C27 SING N N 13 U9X C7 C2 SING N N 14 U9X C7 C9 SING N N 15 U9X C2 O7 DOUB N N 16 U9X C13 C6 SING N N 17 U9X C6 N2 SING N N 18 U9X C6 C10 SING N N 19 U9X O3 C19 DOUB N N 20 U9X N1 C10 SING N N 21 U9X N1 C12 SING N N 22 U9X C27 C28 SING N N 23 U9X C29 C28 SING N N 24 U9X C9 C12 SING N N 25 U9X N2 C14 SING N N 26 U9X C28 C30 SING N N 27 U9X C10 O1 DOUB N N 28 U9X O4 C14 DOUB N N 29 U9X C12 C11 SING N N 30 U9X C25 N4 SING N N 31 U9X C19 C20 SING N N 32 U9X C19 O2 SING N N 33 U9X C14 C15 SING N N 34 U9X C20 N4 SING N N 35 U9X C20 C21 SING N N 36 U9X C22 C21 SING N N 37 U9X C22 C23 SING N N 38 U9X C15 O2 SING N N 39 U9X C15 C16 SING N N 40 U9X N4 C26 SING N N 41 U9X C21 C24 SING N N 42 U9X C16 C17 SING N N 43 U9X C18 C17 SING N N 44 U9X C17 C3 SING N N 45 U9X C33 H1 SING N N 46 U9X C32 H2 SING N N 47 U9X C32 H3 SING N N 48 U9X C32 H4 SING N N 49 U9X C4 H5 SING N N 50 U9X C27 H6 SING N N 51 U9X C27 H7 SING N N 52 U9X C28 H8 SING N N 53 U9X C30 H9 SING N N 54 U9X C30 H10 SING N N 55 U9X C30 H11 SING N N 56 U9X C29 H12 SING N N 57 U9X C29 H13 SING N N 58 U9X C29 H14 SING N N 59 U9X C7 H15 SING N N 60 U9X C7 H16 SING N N 61 U9X C9 H17 SING N N 62 U9X C9 H18 SING N N 63 U9X C12 H19 SING N N 64 U9X C11 H20 SING N N 65 U9X C11 H21 SING N N 66 U9X C11 H22 SING N N 67 U9X N1 H23 SING N N 68 U9X C6 H24 SING N N 69 U9X C13 H25 SING N N 70 U9X C13 H26 SING N N 71 U9X C8 H27 SING N N 72 U9X C5 H28 SING N N 73 U9X C5 H29 SING N N 74 U9X C5 H30 SING N N 75 U9X C1 H31 SING N N 76 U9X C1 H32 SING N N 77 U9X C1 H33 SING N N 78 U9X N2 H34 SING N N 79 U9X C15 H35 SING N N 80 U9X C16 H36 SING N N 81 U9X C16 H37 SING N N 82 U9X C17 H38 SING N N 83 U9X C18 H39 SING N N 84 U9X C18 H40 SING N N 85 U9X C18 H41 SING N N 86 U9X C3 H42 SING N N 87 U9X C3 H43 SING N N 88 U9X C3 H44 SING N N 89 U9X C20 H45 SING N N 90 U9X C26 H47 SING N N 91 U9X C26 H48 SING N N 92 U9X C26 H49 SING N N 93 U9X C25 H50 SING N N 94 U9X C25 H51 SING N N 95 U9X C25 H52 SING N N 96 U9X C21 H53 SING N N 97 U9X C24 H54 SING N N 98 U9X C24 H55 SING N N 99 U9X C24 H56 SING N N 100 U9X C22 H57 SING N N 101 U9X C22 H58 SING N N 102 U9X C23 H59 SING N N 103 U9X C23 H60 SING N N 104 U9X C23 H61 SING N N 105 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U9X InChI InChI 1.06 "InChI=1S/C34H60N4O7/c1-13-23(8)31(37(10)11)34(43)45-28(18-22(6)7)33(42)36-25(16-20(2)3)32(41)35-24(9)14-15-29(39)38-26(17-21(4)5)27(44-12)19-30(38)40/h19-26,28,31H,13-18H2,1-12H3,(H,35,41)(H,36,42)/t23-,24-,25-,26-,28-,31-/m0/s1" U9X InChIKey InChI 1.06 QKERMDKGLIBAHM-VZNHIJNGSA-N U9X SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](N(C)C)C(=O)O[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)CCC(=O)N1[C@@H](CC(C)C)C(=CC1=O)OC" U9X SMILES CACTVS 3.385 "CC[CH](C)[CH](N(C)C)C(=O)O[CH](CC(C)C)C(=O)N[CH](CC(C)C)C(=O)N[CH](C)CCC(=O)N1[CH](CC(C)C)C(=CC1=O)OC" U9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)O[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)CCC(=O)N1[C@H](C(=CC1=O)OC)CC(C)C)N(C)C" U9X SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)OC(CC(C)C)C(=O)NC(CC(C)C)C(=O)NC(C)CCC(=O)N1C(C(=CC1=O)OC)CC(C)C)N(C)C" # _pdbx_chem_comp_identifier.comp_id U9X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-5-[(2~{S})-3-methoxy-2-(2-methylpropyl)-5-oxidanylidene-2~{H}-pyrrol-1-yl]-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl] (2~{S},3~{S})-2-(dimethylamino)-3-methyl-pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U9X "Create component" 2023-01-31 PDBE U9X "Initial release" 2024-02-07 RCSB #