data_UAD # _chem_comp.id UAD _chem_comp.name "[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2S,3R,4S,5S)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H22 N2 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 536.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UAD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UAD N1 N1 N 0 1 N N N 9.719 9.752 31.873 5.517 -0.944 0.287 N1 UAD 1 UAD C2 C2 C 0 1 N N N 9.243 9.842 33.243 6.166 -1.919 0.949 C2 UAD 2 UAD O2 O2 O 0 1 N N N 9.016 8.802 33.829 6.169 -1.919 2.165 O2 UAD 3 UAD N3 N3 N 0 1 N N N 9.048 11.106 33.867 6.813 -2.895 0.285 N3 UAD 4 UAD C4 C4 C 0 1 N N N 9.311 12.208 33.174 6.819 -2.909 -1.064 C4 UAD 5 UAD O4 O4 O 0 1 N N N 9.105 13.360 33.859 7.403 -3.792 -1.666 O4 UAD 6 UAD C5 C5 C 0 1 N N N 9.782 12.183 31.814 6.140 -1.890 -1.773 C5 UAD 7 UAD C6 C6 C 0 1 N N N 9.963 10.960 31.225 5.499 -0.923 -1.081 C6 UAD 8 UAD PA PA P 0 1 N N N 11.545 10.254 26.703 -0.370 1.653 -1.112 PA UAD 9 UAD PB PB P 0 1 N N N 14.356 11.255 26.735 -3.168 0.676 -1.143 PB UAD 10 UAD O01 O01 O 0 1 N N N 11.335 9.040 25.711 -0.791 3.062 -0.953 O01 UAD 11 UAD O02 O02 O 0 1 N N N 12.875 10.976 26.188 -1.605 0.681 -0.760 O02 UAD 12 UAD C1A C1A C 0 1 N N S 16.277 9.488 26.292 -5.400 -0.355 -0.095 C1A UAD 13 UAD O1A O1A O 0 1 N N N 10.457 11.247 26.568 0.096 1.399 -2.632 O1A UAD 14 UAD O1B O1B O 0 1 N N N 14.363 12.230 27.844 -3.356 0.075 -2.625 O1B UAD 15 UAD C1C C1C C 0 1 N N R 9.980 8.491 31.070 4.817 0.101 1.038 C1C UAD 16 UAD C2A C2A C 0 1 N N R 17.615 9.360 27.067 -5.798 -1.735 0.435 C2A UAD 17 UAD O2A O2A O 0 1 N N N 17.863 10.398 27.956 -5.279 -2.746 -0.431 O2A UAD 18 UAD O2B O2B O 0 1 N N N 15.048 11.776 25.407 -3.691 2.060 -1.102 O2B UAD 19 UAD C2C C2C C 0 1 N N R 9.105 8.098 29.836 5.441 1.490 0.751 C2C UAD 20 UAD O2C O2C O 0 1 N N N 7.844 7.646 30.178 6.546 1.742 1.622 O2C UAD 21 UAD C3A C3A C 0 1 N N S 18.633 9.237 25.887 -7.326 -1.835 0.481 C3A UAD 22 UAD O3A O3A O 0 1 N N N 19.918 9.232 26.420 -7.706 -3.092 1.043 O3A UAD 23 UAD O3B O3B O 0 1 N N N 15.195 9.902 27.058 -3.976 -0.233 -0.088 O3B UAD 24 UAD C3C C3C C 0 1 N N S 10.023 7.081 29.073 4.263 2.446 1.062 C3C UAD 25 UAD O3C O3C O 0 1 N N N 9.692 5.745 29.304 4.386 2.978 2.382 O3C UAD 26 UAD C4A C4A C 0 1 N N S 18.322 7.931 25.094 -7.875 -0.698 1.349 C4A UAD 27 UAD O4A O4A O 0 1 N N N 18.699 6.832 25.881 -7.400 -0.848 2.688 O4A UAD 28 UAD C4C C4C C 0 1 N N R 11.481 7.483 29.495 3.013 1.551 0.955 C4C UAD 29 UAD O4C O4C O 0 1 N N N 11.320 8.238 30.701 3.457 0.237 0.573 O4C UAD 30 UAD O5A O5A O 0 1 N N N 15.918 8.238 25.777 -5.969 0.657 0.739 O5A UAD 31 UAD C5C C5C C 0 1 N N N 12.270 8.313 28.408 2.063 2.110 -0.105 C5C UAD 32 UAD O5C O5C O 0 1 N N N 11.566 9.530 28.167 0.857 1.344 -0.116 O5C UAD 33 UAD C5M C5M C 0 1 N N N 16.797 7.833 24.747 -7.397 0.642 0.783 C5M UAD 34 UAD H5 H5 H 0 1 N N N 9.986 13.097 31.277 6.134 -1.885 -2.853 H5 UAD 35 UAD H6 H6 H 0 1 N N N 10.314 10.931 30.204 4.975 -0.138 -1.605 H6 UAD 36 UAD H1A H1A H 0 1 N N N 16.472 10.251 25.524 -5.770 -0.236 -1.114 H1A UAD 37 UAD HO1A HO1A H 0 0 N N N 9.842 10.955 25.905 0.386 0.494 -2.809 HO1A UAD 38 UAD HO1B HO1B H 0 0 N N N 14.795 13.028 27.562 -3.035 -0.832 -2.725 HO1B UAD 39 UAD H1C H1C H 0 1 N N N 9.636 7.855 31.899 4.837 -0.116 2.106 H1C UAD 40 UAD H2A H2A H 0 1 N N N 17.652 8.509 27.763 -5.393 -1.870 1.438 H2A UAD 41 UAD HO2A HO2A H 0 0 N N N 18.695 10.251 28.391 -4.315 -2.739 -0.511 HO2A UAD 42 UAD H2C H2C H 0 1 N N N 8.832 8.946 29.191 5.745 1.572 -0.292 H2C UAD 43 UAD HO2C HO2C H 0 0 N N N 7.362 7.424 29.390 6.970 2.600 1.481 HO2C UAD 44 UAD H3A H3A H 0 1 N N N 18.552 10.083 25.189 -7.727 -1.751 -0.529 H3A UAD 45 UAD HO3A HO3A H 0 0 N N N 20.553 9.158 25.717 -8.662 -3.224 1.103 HO3A UAD 46 UAD H3C H3C H 0 1 N N N 9.897 7.143 27.982 4.222 3.251 0.329 H3C UAD 47 UAD HO3C HO3C H 0 0 N N N 10.282 5.183 28.816 5.187 3.502 2.523 HO3C UAD 48 UAD H4A H4A H 0 1 N N N 18.885 7.940 24.149 -8.964 -0.729 1.343 H4A UAD 49 UAD HO4A HO4A H 0 0 N N N 18.515 6.027 25.411 -7.709 -0.161 3.294 HO4A UAD 50 UAD H4C H4C H 0 1 N N N 12.095 6.579 29.625 2.508 1.503 1.920 H4C UAD 51 UAD H5C H5C H 0 1 N N N 13.284 8.535 28.773 1.830 3.150 0.127 H5C UAD 52 UAD H5CA H5CA H 0 0 N N N 12.341 7.733 27.476 2.538 2.054 -1.085 H5CA UAD 53 UAD H5M H5M H 0 1 N N N 16.611 8.481 23.878 -7.793 0.773 -0.224 H5M UAD 54 UAD H5MA H5MA H 0 0 N N N 16.576 6.781 24.515 -7.749 1.452 1.421 H5MA UAD 55 UAD HN3 HN3 H 0 1 N N N 8.719 11.163 34.810 7.276 -3.589 0.777 HN3 UAD 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UAD C1C N1 SING N N 1 UAD C6 N1 SING N N 2 UAD N1 C2 SING N N 3 UAD C2 O2 DOUB N N 4 UAD C2 N3 SING N N 5 UAD C4 N3 SING N N 6 UAD C5 C4 SING N N 7 UAD C4 O4 DOUB N N 8 UAD C6 C5 DOUB N N 9 UAD C5 H5 SING N N 10 UAD C6 H6 SING N N 11 UAD O01 PA DOUB N N 12 UAD O02 PA SING N N 13 UAD O1A PA SING N N 14 UAD PA O5C SING N N 15 UAD O2B PB DOUB N N 16 UAD O02 PB SING N N 17 UAD PB O3B SING N N 18 UAD PB O1B SING N N 19 UAD O5A C1A SING N N 20 UAD C1A O3B SING N N 21 UAD C1A C2A SING N N 22 UAD C1A H1A SING N N 23 UAD O1A HO1A SING N N 24 UAD O1B HO1B SING N N 25 UAD C2C C1C SING N N 26 UAD O4C C1C SING N N 27 UAD C1C H1C SING N N 28 UAD C3A C2A SING N N 29 UAD C2A O2A SING N N 30 UAD C2A H2A SING N N 31 UAD O2A HO2A SING N N 32 UAD C3C C2C SING N N 33 UAD C2C O2C SING N N 34 UAD C2C H2C SING N N 35 UAD O2C HO2C SING N N 36 UAD C4A C3A SING N N 37 UAD C3A O3A SING N N 38 UAD C3A H3A SING N N 39 UAD O3A HO3A SING N N 40 UAD C3C O3C SING N N 41 UAD C3C C4C SING N N 42 UAD C3C H3C SING N N 43 UAD O3C HO3C SING N N 44 UAD C5M C4A SING N N 45 UAD C4A O4A SING N N 46 UAD C4A H4A SING N N 47 UAD O4A HO4A SING N N 48 UAD C5C C4C SING N N 49 UAD C4C O4C SING N N 50 UAD C4C H4C SING N N 51 UAD C5M O5A SING N N 52 UAD O5C C5C SING N N 53 UAD C5C H5C SING N N 54 UAD C5C H5CA SING N N 55 UAD C5M H5M SING N N 56 UAD C5M H5MA SING N N 57 UAD N3 HN3 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UAD SMILES ACDLabs 12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OCC(O)C(O)C3O)O)O" UAD SMILES_CANONICAL CACTVS 3.370 "O[C@H]1CO[C@@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@H]1O" UAD SMILES CACTVS 3.370 "O[CH]1CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH]1O" UAD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@@H]([C@H]([C@@H](O1)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)O)O)O" UAD SMILES "OpenEye OEToolkits" 1.7.0 "C1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)O)O)O" UAD InChI InChI 1.03 "InChI=1S/C14H22N2O16P2/c17-5-3-28-13(11(22)8(5)19)31-34(26,27)32-33(24,25)29-4-6-9(20)10(21)12(30-6)16-2-1-7(18)15-14(16)23/h1-2,5-6,8-13,17,19-22H,3-4H2,(H,24,25)(H,26,27)(H,15,18,23)/t5-,6+,8-,9+,10+,11+,12+,13-/m0/s1" UAD InChIKey InChI 1.03 DQQDLYVHOTZLOR-YDXBSWQDSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UAD "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2S,3R,4S,5S)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" UAD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UAD "Create component" 2010-08-24 RCSB UAD "Modify descriptor" 2011-06-04 RCSB #