data_UAP # _chem_comp.id UAP _chem_comp.name "4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid" _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H8 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enuronic acid; 4-deoxy-2-O-sulfo-L-threo-hex-4-enuronic acid; 4-deoxy-2-O-sulfo-threo-hex-4-enuronic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 256.187 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UAP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BFB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 UAP "4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enuronic acid" PDB ? 2 UAP "4-deoxy-2-O-sulfo-L-threo-hex-4-enuronic acid" PDB ? 3 UAP "4-deoxy-2-O-sulfo-threo-hex-4-enuronic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UAP S S S 0 1 N N N 9.398 -3.615 56.490 -2.797 0.158 -0.147 S UAP 1 UAP C1 C1 C 0 1 N N R 8.236 -1.815 53.345 0.296 0.974 0.701 C1 UAP 2 UAP O1 O1 O 0 1 N Y N 6.953 -1.492 52.853 -0.499 2.115 0.372 O1 UAP 3 UAP C2 C2 C 0 1 N N R 7.985 -2.915 54.333 -0.387 -0.299 0.183 C2 UAP 4 UAP O2 O2 O 0 1 N N N 9.261 -3.255 54.797 -1.697 -0.405 0.743 O2 UAP 5 UAP C3 C3 C 0 1 N N S 7.390 -4.151 53.652 0.457 -1.505 0.612 C3 UAP 6 UAP O3 O3 O 0 1 N N N 6.010 -4.043 53.417 0.022 -2.667 -0.097 O3 UAP 7 UAP C4 C4 C 0 1 N N N 8.037 -4.426 52.408 1.905 -1.239 0.300 C4 UAP 8 UAP C5 C5 C 0 1 N N N 8.850 -3.551 51.831 2.366 -0.020 0.064 C5 UAP 9 UAP O5 O5 O 0 1 N N N 9.111 -2.319 52.330 1.578 1.083 0.076 O5 UAP 10 UAP C6 C6 C 0 1 N N N 9.498 -3.984 50.768 3.801 0.145 -0.224 C6 UAP 11 UAP O1S O1S O 0 1 N N N 9.063 -2.438 57.214 -3.022 -0.842 -1.272 O1S UAP 12 UAP O2S O2S O 0 1 N N N 10.761 -4.020 56.741 -3.984 0.157 0.634 O2S UAP 13 UAP O3S O3S O 0 1 N N N 8.437 -4.626 56.834 -2.265 1.329 -0.751 O3S UAP 14 UAP O6B O61 O 0 1 N N N 9.258 -5.132 50.386 4.303 1.372 -0.468 O6B UAP 15 UAP O6A O62 O 0 1 N N N 10.352 -3.267 50.239 4.533 -0.825 -0.241 O6A UAP 16 UAP H1 H1 H 0 1 N N N 8.690 -0.954 53.857 0.419 0.911 1.782 H1 UAP 17 UAP HO1 HO1 H 0 1 N Y N 6.414 -1.164 53.563 -0.125 2.955 0.671 HO1 UAP 18 UAP H2 H2 H 0 1 N N N 7.324 -2.569 55.142 -0.453 -0.264 -0.904 H2 UAP 19 UAP H3 H3 H 0 1 N N N 7.564 -5.003 54.326 0.340 -1.667 1.683 H3 UAP 20 UAP HO3 HO3 H 0 1 N N N 5.697 -4.835 52.995 0.513 -3.470 0.125 HO3 UAP 21 UAP H4 H4 H 0 1 N N N 7.859 -5.374 51.923 2.592 -2.072 0.268 H4 UAP 22 UAP HO1S HO1S H 0 0 N N N 8.293 -2.601 57.745 -3.708 -0.579 -1.901 HO1S UAP 23 UAP HO6B HO61 H 0 0 N N N 9.821 -5.346 49.652 5.251 1.430 -0.652 HO6B UAP 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UAP O2 S SING N N 1 UAP S O2S DOUB N N 2 UAP S O3S DOUB N N 3 UAP S O1S SING N N 4 UAP O5 C1 SING N N 5 UAP O1 C1 SING N N 6 UAP C1 C2 SING N N 7 UAP C1 H1 SING N N 8 UAP O1 HO1 SING N N 9 UAP C3 C2 SING N N 10 UAP C2 O2 SING N N 11 UAP C2 H2 SING N N 12 UAP C4 C3 SING N N 13 UAP O3 C3 SING N N 14 UAP C3 H3 SING N N 15 UAP O3 HO3 SING N N 16 UAP C5 C4 DOUB N N 17 UAP C4 H4 SING N N 18 UAP C6 C5 SING N N 19 UAP C5 O5 SING N N 20 UAP O6A C6 DOUB N N 21 UAP O6B C6 SING N N 22 UAP O1S HO1S SING N N 23 UAP O6B HO6B SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UAP SMILES ACDLabs 12.01 "O=C(O)C=1OC(O)C(OS(=O)(=O)O)C(O)C=1" UAP InChI InChI 1.03 "InChI=1S/C6H8O9S/c7-2-1-3(5(8)9)14-6(10)4(2)15-16(11,12)13/h1-2,4,6-7,10H,(H,8,9)(H,11,12,13)/t2-,4+,6+/m0/s1" UAP InChIKey InChI 1.03 VJIMUKBSNUBECH-YKKSOZKNSA-N UAP SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1OC(=C[C@H](O)[C@H]1O[S](O)(=O)=O)C(O)=O" UAP SMILES CACTVS 3.370 "O[CH]1OC(=C[CH](O)[CH]1O[S](O)(=O)=O)C(O)=O" UAP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=C(O[C@H]([C@@H]([C@H]1O)OS(=O)(=O)O)O)C(=O)O" UAP SMILES "OpenEye OEToolkits" 1.7.6 "C1=C(OC(C(C1O)OS(=O)(=O)O)O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UAP "SYSTEMATIC NAME" ACDLabs 12.01 "4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid" UAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S)-2,4-bis(oxidanyl)-3-sulfooxy-3,4-dihydro-2H-pyran-6-carboxylic acid" UAP "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-4-deoxy-GlcpA2SO3 # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support UAP "CARBOHYDRATE ISOMER" L PDB ? UAP "CARBOHYDRATE RING" dihydropyran PDB ? UAP "CARBOHYDRATE ANOMER" alpha PDB ? UAP "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UAP "Create component" 1999-07-08 RCSB UAP "Modify descriptor" 2011-06-04 RCSB UAP "Other modification" 2012-12-21 RCSB UAP "Other modification" 2020-07-03 RCSB UAP "Modify synonyms" 2020-07-17 RCSB UAP "Modify internal type" 2020-07-17 RCSB UAP "Modify linking type" 2020-07-17 RCSB UAP "Modify atom id" 2020-07-17 RCSB UAP "Modify component atom id" 2020-07-17 RCSB ##