data_UAR # _chem_comp.id UAR _chem_comp.name ;URACIL ARABINOSE-5'-PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-12-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.181 _chem_comp.one_letter_code U _chem_comp.three_letter_code UAR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HO6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UAR OP3 O3P O 0 1 N Y N -6.734 6.915 0.897 -2.206 0.857 -4.669 OP3 UAR 1 UAR P P P 0 1 N N N -6.021 7.011 -0.546 -1.021 -0.019 -4.022 P UAR 2 UAR OP1 O1P O 0 1 N N N -6.726 8.036 -1.349 -1.552 -1.339 -3.613 OP1 UAR 3 UAR OP2 O2P O 0 1 N N N -5.861 5.636 -1.074 0.148 -0.224 -5.108 OP2 UAR 4 UAR "O5'" O5* O 0 1 N N N -4.555 7.571 -0.173 -0.430 0.743 -2.733 "O5'" UAR 5 UAR "C5'" C5* C 0 1 N N N -4.390 8.784 0.581 0.610 -0.081 -2.207 "C5'" UAR 6 UAR "C4'" C4* C 0 1 N N R -2.995 8.875 1.201 1.218 0.589 -0.973 "C4'" UAR 7 UAR "O4'" O4* O 0 1 N N N -2.749 7.788 2.105 0.216 0.749 0.057 "O4'" UAR 8 UAR "C3'" C3* C 0 1 N N S -1.908 8.822 0.136 2.295 -0.315 -0.335 "C3'" UAR 9 UAR "O3'" O3* O 0 1 N N N -1.351 10.128 -0.092 3.601 0.092 -0.750 "O3'" UAR 10 UAR "C2'" C2* C 0 1 N N S -0.871 7.868 0.675 2.118 -0.101 1.184 "C2'" UAR 11 UAR "O2'" O2* O 0 1 N N N -0.792 6.696 -0.151 1.775 -1.330 1.826 "O2'" UAR 12 UAR "C1'" C1* C 0 1 N N R -1.342 7.522 2.080 0.955 0.910 1.287 "C1'" UAR 13 UAR N1 N1 N 0 1 N N N -1.057 6.111 2.429 0.106 0.595 2.439 N1 UAR 14 UAR C2 C2 C 0 1 N N N 0.032 5.847 3.246 -0.511 -0.598 2.505 C2 UAR 15 UAR O2 O2 O 0 1 N N N 0.772 6.728 3.672 -0.354 -1.404 1.609 O2 UAR 16 UAR N3 N3 N 0 1 N N N 0.245 4.523 3.554 -1.292 -0.915 3.554 N3 UAR 17 UAR C4 C4 C 0 1 N N N -0.513 3.452 3.132 -1.477 -0.032 4.556 C4 UAR 18 UAR O4 O4 O 0 1 N N N -0.228 2.313 3.481 -2.187 -0.316 5.503 O4 UAR 19 UAR C5 C5 C 0 1 N N N -1.624 3.812 2.286 -0.836 1.229 4.497 C5 UAR 20 UAR C6 C6 C 0 1 N N N -1.859 5.104 1.964 -0.054 1.519 3.435 C6 UAR 21 UAR HOP3 3HOP H 0 0 N N N -6.281 6.257 1.412 -2.531 0.366 -5.435 HOP3 UAR 22 UAR HOP2 2HOP H 0 0 N N N -5.440 5.692 -1.924 0.466 0.657 -5.347 HOP2 UAR 23 UAR "H5'" 1H5* H 0 1 N N N -4.620 9.682 -0.037 1.383 -0.218 -2.963 "H5'" UAR 24 UAR "H5''" 2H5* H 0 0 N N N -5.187 8.895 1.352 0.200 -1.051 -1.927 "H5''" UAR 25 UAR "H4'" H4* H 0 1 N N N -2.964 9.848 1.743 1.646 1.556 -1.240 "H4'" UAR 26 UAR "H3'" H3* H 0 1 N N N -2.303 8.481 -0.849 2.121 -1.359 -0.597 "H3'" UAR 27 UAR "HO3'" H3T H 0 0 N Y N -0.672 10.094 -0.756 4.230 -0.486 -0.298 "HO3'" UAR 28 UAR "H2'" H2* H 0 1 N N N 0.150 8.314 0.685 3.026 0.315 1.619 "H2'" UAR 29 UAR "HO2'" 2HO* H 0 0 N N N -0.139 6.095 0.188 2.511 -1.939 1.676 "HO2'" UAR 30 UAR "H1'" H1* H 0 1 N N N -0.798 8.132 2.838 1.341 1.925 1.368 "H1'" UAR 31 UAR H3 H3 H 0 1 N N N 1.043 4.315 4.154 -1.728 -1.781 3.587 H3 UAR 32 UAR H5 H5 H 0 1 N N N -2.323 3.068 1.867 -0.972 1.949 5.290 H5 UAR 33 UAR H6 H6 H 0 1 N N N -2.717 5.339 1.312 0.442 2.476 3.373 H6 UAR 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UAR OP3 P SING N N 1 UAR OP3 HOP3 SING N N 2 UAR P OP1 DOUB N N 3 UAR P OP2 SING N N 4 UAR P "O5'" SING N N 5 UAR OP2 HOP2 SING N N 6 UAR "O5'" "C5'" SING N N 7 UAR "C5'" "C4'" SING N N 8 UAR "C5'" "H5'" SING N N 9 UAR "C5'" "H5''" SING N N 10 UAR "C4'" "O4'" SING N N 11 UAR "C4'" "C3'" SING N N 12 UAR "C4'" "H4'" SING N N 13 UAR "O4'" "C1'" SING N N 14 UAR "C3'" "O3'" SING N N 15 UAR "C3'" "C2'" SING N N 16 UAR "C3'" "H3'" SING N N 17 UAR "O3'" "HO3'" SING N N 18 UAR "C2'" "O2'" SING N N 19 UAR "C2'" "C1'" SING N N 20 UAR "C2'" "H2'" SING N N 21 UAR "O2'" "HO2'" SING N N 22 UAR "C1'" N1 SING N N 23 UAR "C1'" "H1'" SING N N 24 UAR N1 C2 SING N N 25 UAR N1 C6 SING N N 26 UAR C2 O2 DOUB N N 27 UAR C2 N3 SING N N 28 UAR N3 C4 SING N N 29 UAR N3 H3 SING N N 30 UAR C4 O4 DOUB N N 31 UAR C4 C5 SING N N 32 UAR C5 C6 DOUB N N 33 UAR C5 H5 SING N N 34 UAR C6 H6 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UAR SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)COP(=O)(O)O" UAR SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O" UAR SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O" UAR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" UAR SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O" UAR InChI InChI 1.03 "InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7+,8-/m1/s1" UAR InChIKey InChI 1.03 DJJCXFVJDGTHFX-CCXZUQQUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UAR "SYSTEMATIC NAME" ACDLabs 10.04 "1-(5-O-phosphono-beta-D-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione" UAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UAR "Create component" 2000-12-18 RCSB UAR "Modify descriptor" 2011-06-04 RCSB #