data_UAX
#
_chem_comp.id UAX
_chem_comp.name "~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H41 N5 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(S,S,R)-13b; ketoamide inhibitor 13b (bound)"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-01-31
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 595.687
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UAX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8CAJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UAX O26 O1 O 0 1 N N N N N N -13.556 5.356 -0.669 4.681 1.243 0.135 O26 UAX 1
UAX C24 C1 C 0 1 N N N N N N -14.639 5.368 -0.137 5.615 0.660 0.648 C24 UAX 2
UAX O25 O2 O 0 1 N N N N N N -15.456 6.428 -0.027 6.862 1.158 0.541 O25 UAX 3
UAX C27 C2 C 0 1 N N N N N N -15.115 7.604 0.804 7.015 2.396 -0.203 C27 UAX 4
UAX C31 C3 C 0 1 N N N N N N -14.737 8.747 -0.111 6.528 2.192 -1.639 C31 UAX 5
UAX C32 C4 C 0 1 N N N N N N -16.395 7.912 1.546 6.188 3.497 0.465 C32 UAX 6
UAX C33 C5 C 0 1 N N N N N N -13.990 7.271 1.760 8.489 2.804 -0.217 C33 UAX 7
UAX N23 N1 N 0 1 N N N N N N -15.245 4.311 0.449 5.404 -0.484 1.330 N23 UAX 8
UAX C19 C6 C 0 1 N N N N N N -15.568 3.076 -0.142 4.096 -0.948 1.531 C19 UAX 9
UAX C21 C7 C 0 1 N N N N N N -15.622 2.003 0.740 3.266 -1.248 0.429 C21 UAX 10
UAX O22 O3 O 0 1 N N N N N N -15.405 2.076 1.941 3.686 -1.104 -0.708 O22 UAX 11
UAX C18 C8 C 0 1 N N N N N N -15.819 2.913 -1.511 3.610 -1.120 2.799 C18 UAX 12
UAX C17 C9 C 0 1 N N N N N N -16.128 1.649 -2.004 2.299 -1.586 2.972 C17 UAX 13
UAX C16 C10 C 0 1 N N N N N N -16.184 0.606 -1.155 1.530 -1.859 1.894 C16 UAX 14
UAX N15 N2 N 0 1 N N N N N N -15.962 0.763 0.188 2.012 -1.693 0.633 N15 UAX 15
UAX C20 C11 C 0 1 N N S N N N -15.997 -0.404 1.089 1.156 -1.997 -0.516 C20 UAX 16
UAX C22 C12 C 0 1 N N N N N N -16.915 -1.534 0.612 0.737 -3.468 -0.465 C22 UAX 17
UAX C29 C13 C 0 1 N N N N N N -18.378 -1.216 0.773 1.972 -4.356 -0.634 C29 UAX 18
UAX C34 C14 C 0 1 N N N N N N -19.427 -2.179 0.314 2.357 -5.261 0.538 C34 UAX 19
UAX C30 C15 C 0 1 N N N N N N -19.201 -1.968 1.771 1.748 -5.866 -0.729 C30 UAX 20
UAX C36 C16 C 0 1 N N N N N N -14.576 -0.901 1.309 -0.072 -1.124 -0.472 C36 UAX 21
UAX O37 O4 O 0 1 N N N N N N -13.781 -0.884 0.374 -0.217 -0.326 0.430 O37 UAX 22
UAX N38 N3 N 0 1 N N N N N N -14.245 -1.332 2.532 -1.008 -1.229 -1.436 N38 UAX 23
UAX C40 C17 C 0 1 N N S N N N -12.883 -1.703 2.889 -2.201 -0.380 -1.394 C40 UAX 24
UAX C42 C18 C 0 1 N N N N N N -12.353 -0.798 3.993 -1.891 0.968 -2.047 C42 UAX 25
UAX C45 C19 C 0 1 N N R N N N -11.060 -0.133 3.532 -0.839 1.707 -1.217 C45 UAX 26
UAX C47 C20 C 0 1 N N N N N N -10.610 1.017 4.408 -1.402 2.086 0.135 C47 UAX 27
UAX O48 O5 O 0 1 N N N N N N -10.894 1.179 5.610 -2.050 1.350 0.848 O48 UAX 28
UAX N49 N4 N 0 1 N N N N N N -9.851 1.819 3.670 -1.077 3.356 0.430 N49 UAX 29
UAX C51 C21 C 0 1 N N N N N N -9.940 1.553 2.238 -0.278 3.966 -0.639 C51 UAX 30
UAX C54 C22 C 0 1 N N N N N N -11.043 0.504 2.149 -0.485 3.061 -1.874 C54 UAX 31
UAX C57 C23 C 0 1 N N S N N N -12.759 -3.196 3.200 -3.341 -1.064 -2.151 C57 UAX 32
UAX O40 O6 O 0 1 N N N N N N -11.428 -3.539 3.557 -2.999 -1.167 -3.535 O40 UAX 33
UAX C35 C24 C 0 1 N N N N N N -13.203 -3.887 1.921 -4.601 -0.251 -2.005 C35 UAX 34
UAX O41 O7 O 0 1 N N N N N N -14.404 -4.073 1.729 -5.102 0.273 -2.977 O41 UAX 35
UAX N36 N5 N 0 1 N N N N N N -12.277 -4.221 1.025 -5.172 -0.105 -0.793 N36 UAX 36
UAX C13 C25 C 0 1 N N N N N N -11.308 -5.276 1.243 -6.397 0.686 -0.650 C13 UAX 37
UAX C14 C26 C 0 1 Y N N N N N -10.183 -5.307 0.238 -6.826 0.691 0.795 C14 UAX 38
UAX C28 C27 C 0 1 Y N N N N N -9.483 -6.486 0.023 -6.366 1.676 1.648 C28 UAX 39
UAX C26 C28 C 0 1 Y N N N N N -8.429 -6.535 -0.878 -6.759 1.681 2.974 C26 UAX 40
UAX C25 C29 C 0 1 Y N N N N N -8.061 -5.406 -1.566 -7.612 0.701 3.445 C25 UAX 41
UAX C23 C30 C 0 1 Y N N N N N -8.743 -4.228 -1.360 -8.072 -0.284 2.592 C23 UAX 42
UAX C15 C31 C 0 1 Y N N N N N -9.794 -4.170 -0.455 -7.683 -0.286 1.265 C15 UAX 43
UAX H1 H1 H 0 1 N N N N N N -14.480 9.631 0.492 5.477 1.902 -1.629 H1 UAX 44
UAX H2 H2 H 0 1 N N N N N N -13.870 8.456 -0.722 6.643 3.121 -2.197 H2 UAX 45
UAX H3 H3 H 0 1 N N N N N N -15.586 8.986 -0.769 7.117 1.408 -2.114 H3 UAX 46
UAX H4 H4 H 0 1 N N N N N N -16.650 7.068 2.204 6.534 3.642 1.488 H4 UAX 47
UAX H5 H5 H 0 1 N N N N N N -16.258 8.821 2.151 6.302 4.426 -0.093 H5 UAX 48
UAX H6 H6 H 0 1 N N N N N N -17.208 8.072 0.823 5.137 3.207 0.475 H6 UAX 49
UAX H7 H7 H 0 1 N N N N N N -14.295 6.438 2.410 9.078 2.019 -0.692 H7 UAX 50
UAX H8 H8 H 0 1 N N N N N N -13.096 6.981 1.188 8.604 3.733 -0.775 H8 UAX 51
UAX H9 H9 H 0 1 N N N N N N -13.760 8.152 2.377 8.836 2.949 0.806 H9 UAX 52
UAX H10 H10 H 0 1 N N N N N N -15.492 4.419 1.412 6.156 -0.986 1.681 H10 UAX 53
UAX H11 H11 H 0 1 N N N N N N -15.773 3.761 -2.178 4.230 -0.901 3.656 H11 UAX 54
UAX H12 H12 H 0 1 N N N N N N -16.321 1.506 -3.057 1.903 -1.727 3.967 H12 UAX 55
UAX H13 H13 H 0 1 N N N N N N -16.409 -0.377 -1.541 0.521 -2.218 2.036 H13 UAX 56
UAX H14 H14 H 0 1 N N N N N N -16.379 -0.066 2.063 1.704 -1.808 -1.438 H14 UAX 57
UAX H15 H15 H 0 1 N N N N N N -16.688 -2.439 1.194 0.267 -3.679 0.496 H15 UAX 58
UAX H16 H16 H 0 1 N N N N N N -16.713 -1.723 -0.453 0.030 -3.672 -1.268 H16 UAX 59
UAX H17 H17 H 0 1 N N N N N N -18.637 -0.153 0.659 2.780 -3.929 -1.227 H17 UAX 60
UAX H18 H18 H 0 1 N N N N N N -20.347 -1.805 -0.159 3.419 -5.430 0.715 H18 UAX 61
UAX H19 H19 H 0 1 N N N N N N -19.133 -3.129 -0.156 1.730 -5.225 1.429 H19 UAX 62
UAX H20 H20 H 0 1 N N N N N N -19.954 -1.438 2.373 0.721 -6.228 -0.671 H20 UAX 63
UAX H21 H21 H 0 1 N N N N N N -18.740 -2.762 2.376 2.409 -6.433 -1.384 H21 UAX 64
UAX H22 H22 H 0 1 N N N N N N -14.960 -1.402 3.227 -0.892 -1.867 -2.157 H22 UAX 65
UAX H23 H23 H 0 1 N N N N N N -12.254 -1.518 2.006 -2.498 -0.222 -0.357 H23 UAX 66
UAX H24 H24 H 0 1 N N N N N N -13.101 -0.025 4.223 -1.510 0.804 -3.055 H24 UAX 67
UAX H25 H25 H 0 1 N N N N N N -12.156 -1.397 4.894 -2.801 1.566 -2.096 H25 UAX 68
UAX H26 H26 H 0 1 N N N N N N -10.269 -0.897 3.554 0.054 1.092 -1.100 H26 UAX 69
UAX H27 H27 H 0 1 N N N N N N -9.273 2.537 4.059 -1.338 3.812 1.246 H27 UAX 70
UAX H28 H28 H 0 1 N N N N N N -8.989 1.160 1.850 -0.633 4.975 -0.847 H28 UAX 71
UAX H29 H29 H 0 1 N N N N N N -10.214 2.463 1.684 0.775 3.987 -0.358 H29 UAX 72
UAX H30 H30 H 0 1 N N N N N N -12.012 0.974 1.923 0.432 2.983 -2.459 H30 UAX 73
UAX H31 H31 H 0 1 N N N N N N -10.809 -0.244 1.377 -1.309 3.423 -2.490 H31 UAX 74
UAX H32 H32 H 0 1 N N N N N N -13.456 -3.453 4.011 -3.503 -2.062 -1.742 H32 UAX 75
UAX H33 H33 H 0 1 N N N N N N -11.189 -3.089 4.359 -2.840 -0.316 -3.965 H33 UAX 76
UAX H34 H34 H 0 1 N N N N N N -12.249 -3.720 0.160 -4.772 -0.524 -0.014 H34 UAX 77
UAX H35 H35 H 0 1 N N N N N N -11.834 -6.241 1.200 -6.209 1.708 -0.977 H35 UAX 78
UAX H36 H36 H 0 1 N N N N N N -10.872 -5.141 2.244 -7.186 0.247 -1.261 H36 UAX 79
UAX H37 H37 H 0 1 N N N N N N -9.763 -7.378 0.565 -5.699 2.442 1.280 H37 UAX 80
UAX H38 H38 H 0 1 N N N N N N -7.898 -7.462 -1.038 -6.399 2.451 3.641 H38 UAX 81
UAX H39 H39 H 0 1 N N N N N N -7.240 -5.442 -2.266 -7.915 0.702 4.482 H39 UAX 82
UAX H40 H40 H 0 1 N N N N N N -8.458 -3.342 -1.907 -8.738 -1.050 2.960 H40 UAX 83
UAX H41 H41 H 0 1 N N N N N N -10.311 -3.236 -0.290 -8.043 -1.055 0.598 H41 UAX 84
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UAX C17 C18 SING N N 1
UAX C17 C16 DOUB N N 2
UAX C25 C23 DOUB Y N 3
UAX C25 C26 SING Y N 4
UAX C18 C19 DOUB N N 5
UAX C23 C15 SING Y N 6
UAX C16 N15 SING N N 7
UAX C26 C28 DOUB Y N 8
UAX O26 C24 DOUB N N 9
UAX C15 C14 DOUB Y N 10
UAX C19 N23 SING N N 11
UAX C19 C21 SING N N 12
UAX C24 O25 SING N N 13
UAX C24 N23 SING N N 14
UAX C31 C27 SING N N 15
UAX O25 C27 SING N N 16
UAX C28 C14 SING Y N 17
UAX N15 C21 SING N N 18
UAX N15 C20 SING N N 19
UAX C14 C13 SING N N 20
UAX C34 C29 SING N N 21
UAX C34 C30 SING N N 22
UAX O37 C36 DOUB N N 23
UAX C22 C29 SING N N 24
UAX C22 C20 SING N N 25
UAX C21 O22 DOUB N N 26
UAX C29 C30 SING N N 27
UAX C27 C32 SING N N 28
UAX C27 C33 SING N N 29
UAX N36 C13 SING N N 30
UAX N36 C35 SING N N 31
UAX C20 C36 SING N N 32
UAX C36 N38 SING N N 33
UAX O41 C35 DOUB N N 34
UAX C35 C57 SING N N 35
UAX C54 C51 SING N N 36
UAX C54 C45 SING N N 37
UAX C51 N49 SING N N 38
UAX N38 C40 SING N N 39
UAX C40 C57 SING N N 40
UAX C40 C42 SING N N 41
UAX C57 O40 SING N N 42
UAX C45 C42 SING N N 43
UAX C45 C47 SING N N 44
UAX N49 C47 SING N N 45
UAX C47 O48 DOUB N N 46
UAX C31 H1 SING N N 47
UAX C31 H2 SING N N 48
UAX C31 H3 SING N N 49
UAX C32 H4 SING N N 50
UAX C32 H5 SING N N 51
UAX C32 H6 SING N N 52
UAX C33 H7 SING N N 53
UAX C33 H8 SING N N 54
UAX C33 H9 SING N N 55
UAX N23 H10 SING N N 56
UAX C18 H11 SING N N 57
UAX C17 H12 SING N N 58
UAX C16 H13 SING N N 59
UAX C20 H14 SING N N 60
UAX C22 H15 SING N N 61
UAX C22 H16 SING N N 62
UAX C29 H17 SING N N 63
UAX C34 H18 SING N N 64
UAX C34 H19 SING N N 65
UAX C30 H20 SING N N 66
UAX C30 H21 SING N N 67
UAX N38 H22 SING N N 68
UAX C40 H23 SING N N 69
UAX C42 H24 SING N N 70
UAX C42 H25 SING N N 71
UAX C45 H26 SING N N 72
UAX N49 H27 SING N N 73
UAX C51 H28 SING N N 74
UAX C51 H29 SING N N 75
UAX C54 H30 SING N N 76
UAX C54 H31 SING N N 77
UAX C57 H32 SING N N 78
UAX O40 H33 SING N N 79
UAX N36 H34 SING N N 80
UAX C13 H35 SING N N 81
UAX C13 H36 SING N N 82
UAX C28 H37 SING N N 83
UAX C26 H38 SING N N 84
UAX C25 H39 SING N N 85
UAX C23 H40 SING N N 86
UAX C15 H41 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UAX InChI InChI 1.06 "InChI=1S/C31H41N5O7/c1-31(2,3)43-30(42)35-22-10-7-15-36(29(22)41)24(16-19-11-12-19)27(39)34-23(17-21-13-14-32-26(21)38)25(37)28(40)33-18-20-8-5-4-6-9-20/h4-10,15,19,21,23-25,37H,11-14,16-18H2,1-3H3,(H,32,38)(H,33,40)(H,34,39)(H,35,42)/t21-,23+,24+,25+/m1/s1"
UAX InChIKey InChI 1.06 FRACPXUHUTXLCX-VZVHPENPSA-N
UAX SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)NC1=CC=CN([C@@H](CC2CC2)C(=O)N[C@@H](C[C@H]3CCNC3=O)[C@H](O)C(=O)NCc4ccccc4)C1=O"
UAX SMILES CACTVS 3.385 "CC(C)(C)OC(=O)NC1=CC=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NCc4ccccc4)C1=O"
UAX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@H]3CCNC3=O)[C@@H](C(=O)NCc4ccccc4)O"
UAX SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NCc4ccccc4)O"
#
_pdbx_chem_comp_identifier.comp_id UAX
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate"
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 UAX "(S,S,R)-13b" AUTHOR ?
2 UAX "ketoamide inhibitor 13b (bound)" AUTHOR ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UAX "Create component" 2023-01-31 PDBE
UAX "Modify synonyms" 2023-08-13 PDBE
UAX "Modify coordinates" 2023-08-13 PDBE
UAX "Modify name" 2023-08-13 PDBE
UAX "Initial release" 2024-08-07 RCSB
UAX "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id UAX
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C57
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#