data_UB2 # _chem_comp.id UB2 _chem_comp.name "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-alanyl-L-leucine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H28 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-02-05 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UB2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FVP _chem_comp.pdbx_subcomponent_list "PHQ PGL ALA LEU" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UB2 C3 C3 C 0 1 Y N N -15.039 40.681 12.600 -7.941 -0.187 0.920 C4 PHQ 1 UB2 C2 C2 C 0 1 Y N N -16.278 40.210 13.055 -9.199 -0.366 0.375 C5 PHQ 2 UB2 C1 C1 C 0 1 Y N N -17.407 40.312 12.219 -9.372 -1.220 -0.698 C6 PHQ 3 UB2 H29 H29 H 0 1 N N N -18.152 40.973 10.299 -8.423 -2.563 -2.064 H71 PHQ 4 UB2 H28 H28 H 0 1 N N N -15.973 41.848 9.530 -6.182 -2.243 -1.094 H81 PHQ 5 UB2 H5 H5 H 0 1 N N N -13.749 42.556 10.054 -5.578 -0.432 2.044 H21 PHQ 6 UB2 H5A H5A H 0 1 N N N -12.951 42.100 11.594 -4.901 -1.574 0.858 H22 PHQ 7 UB2 C29 C29 C 0 1 Y N N -17.285 40.895 10.939 -8.287 -1.895 -1.226 C7 PHQ 8 UB2 C28 C28 C 0 1 Y N N -16.052 41.371 10.496 -7.030 -1.716 -0.681 C8 PHQ 9 UB2 C4 C4 C 0 1 Y N N -14.911 41.230 11.307 -6.856 -0.858 0.388 C3 PHQ 10 UB2 C5 C5 C 0 1 N N N -13.573 41.734 10.764 -5.484 -0.662 0.982 C2 PHQ 11 UB2 O6 O6 O 0 1 N N N -12.903 40.658 10.097 -4.816 0.435 0.306 O2 PHQ 12 UB2 C7 C7 C 0 1 N N N -12.635 40.920 8.810 -3.572 0.742 0.720 C1 PHQ 13 UB2 O27 O27 O 0 1 N N N -12.936 41.979 8.348 -3.059 0.110 1.622 O1 PHQ 14 UB2 N8 N8 N 0 1 N N N -12.127 39.945 8.078 -2.897 1.750 0.135 N PGL 15 UB2 C9 C9 C 0 1 N N N -11.693 40.112 6.740 -1.543 2.084 0.585 C PGL 16 UB2 P10 P10 P 0 1 N N S -11.252 38.523 5.968 -0.324 1.233 -0.470 P PGL 17 UB2 O12 O12 O 0 1 N N N -12.312 37.529 6.205 -0.498 1.668 -1.874 O1 PGL 18 UB2 O11 O11 O 0 1 N N N -9.926 38.064 6.524 -0.546 -0.359 -0.370 O2 PGL 19 UB2 N13 N13 N 0 1 N N N -11.021 38.850 4.446 1.231 1.616 0.048 N ALA 20 UB2 C14 C14 C 0 1 N N S -9.855 38.360 3.675 2.242 0.947 -0.781 CA ALA 21 UB2 C16 C16 C 0 1 N N N -8.622 39.252 3.805 3.421 0.565 0.075 C ALA 22 UB2 O26 O26 O 0 1 N N N -7.492 38.791 3.659 3.420 0.826 1.260 O ALA 23 UB2 C15 C15 C 0 1 N N N -10.264 38.347 2.166 2.702 1.896 -1.890 CB ALA 24 UB2 N17 N17 N 0 1 N N N -8.836 40.572 4.089 4.478 -0.065 -0.475 N LEU 25 UB2 C18 C18 C 0 1 N N S -7.696 41.461 4.339 5.625 -0.436 0.358 CA LEU 26 UB2 C22 C22 C 0 1 N N N -7.156 42.094 3.034 6.357 -1.618 -0.280 CB LEU 27 UB2 C23 C23 C 0 1 N N N -8.143 42.878 2.157 5.442 -2.845 -0.278 CG LEU 28 UB2 C25 C25 C 0 1 N N N -9.190 42.013 1.418 6.126 -3.992 -1.026 CD2 LEU 29 UB2 C24 C24 C 0 1 N N N -7.318 43.747 1.153 5.163 -3.272 1.164 CD1 LEU 30 UB2 C19 C19 C 0 1 N N N -8.005 42.459 5.417 6.565 0.737 0.468 C LEU 31 UB2 O21 O21 O 0 1 N N N -9.193 42.529 5.823 6.305 1.775 -0.091 O LEU 32 UB2 O20 O20 O 0 1 N N N -7.098 43.217 5.848 7.693 0.627 1.188 OXT LEU 33 UB2 H3 H3 H 0 1 N N N -14.175 40.623 13.245 -7.806 0.480 1.759 H41 PHQ 34 UB2 H2 H2 H 0 1 N N N -16.366 39.772 14.038 -10.046 0.162 0.787 H51 PHQ 35 UB2 H1 H1 H 0 1 N N N -18.365 39.945 12.557 -10.354 -1.360 -1.124 H61 PHQ 36 UB2 HN8 HN8 H 0 1 N N N -12.044 39.038 8.491 -3.306 2.255 -0.586 HN1 PGL 37 UB2 H9 H9 H 0 1 N N N -12.507 40.572 6.160 -1.393 3.161 0.518 H1 PGL 38 UB2 H9A H9A H 0 1 N N N -10.797 40.750 6.747 -1.415 1.763 1.619 H2 PGL 39 UB2 HO11 HO11 H 0 0 N N N -9.301 37.968 5.815 -0.447 -0.714 0.524 HO2 PGL 40 UB2 HN13 HN13 H 0 0 N N N -11.820 38.476 3.975 1.373 2.615 0.056 H ALA 41 UB2 H14 H14 H 0 1 N N N -9.591 37.367 4.069 1.811 0.050 -1.226 HA ALA 42 UB2 H15 H15 H 0 1 N N N -11.361 38.344 2.083 3.452 1.399 -2.505 HB1 ALA 43 UB2 H15A H15A H 0 0 N N N -9.861 39.242 1.669 1.849 2.172 -2.509 HB2 ALA 44 UB2 H15B H15B H 0 0 N N N -9.858 37.446 1.684 3.133 2.793 -1.445 HB3 ALA 45 UB2 HN17 HN17 H 0 0 N N N -9.769 40.931 4.126 4.479 -0.273 -1.422 H LEU 46 UB2 H18 H18 H 0 1 N N N -6.867 40.849 4.725 5.277 -0.717 1.352 HA LEU 47 UB2 H22 H22 H 0 1 N N N -6.363 42.798 3.327 6.627 -1.368 -1.305 HB2 LEU 48 UB2 H22A H22A H 0 0 N N N -6.844 41.240 2.414 7.259 -1.838 0.291 HB3 LEU 49 UB2 H23 H23 H 0 1 N N N -8.746 43.507 2.828 4.503 -2.598 -0.772 HG LEU 50 UB2 H25 H25 H 0 1 N N N -10.037 41.808 2.090 7.065 -4.239 -0.532 HD21 LEU 51 UB2 H25A H25A H 0 0 N N N -9.550 42.552 0.529 5.474 -4.865 -1.025 HD22 LEU 52 UB2 H25B H25B H 0 0 N N N -8.729 41.063 1.109 6.324 -3.688 -2.054 HD23 LEU 53 UB2 H24 H24 H 0 1 N N N -7.124 44.735 1.596 6.103 -3.519 1.658 HD11 LEU 54 UB2 H24A H24A H 0 0 N N N -6.362 43.248 0.937 4.676 -2.455 1.697 HD12 LEU 55 UB2 H24B H24B H 0 0 N N N -7.888 43.869 0.220 4.512 -4.145 1.165 HD13 LEU 56 UB2 HO20 HO20 H 0 0 N N N -7.461 43.811 6.495 8.265 1.406 1.230 HXT LEU 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UB2 C28 C29 DOUB Y N 1 UB2 C29 C1 SING Y N 2 UB2 C29 H29 SING N N 3 UB2 C28 C4 SING Y N 4 UB2 C28 H28 SING N N 5 UB2 C5 C4 SING N N 6 UB2 C4 C3 DOUB Y N 7 UB2 O6 C5 SING N N 8 UB2 C5 H5 SING N N 9 UB2 C5 H5A SING N N 10 UB2 C7 O6 SING N N 11 UB2 N8 C7 SING N N 12 UB2 O27 C7 DOUB N N 13 UB2 C9 N8 SING N N 14 UB2 N8 HN8 SING N N 15 UB2 P10 C9 SING N N 16 UB2 C9 H9 SING N N 17 UB2 C9 H9A SING N N 18 UB2 N13 P10 SING N N 19 UB2 P10 O12 DOUB N N 20 UB2 P10 O11 SING N N 21 UB2 C14 N13 SING N N 22 UB2 N13 HN13 SING N N 23 UB2 C15 C14 SING N N 24 UB2 C14 C16 SING N N 25 UB2 C14 H14 SING N N 26 UB2 O26 C16 DOUB N N 27 UB2 C16 N17 SING N N 28 UB2 N17 C18 SING N N 29 UB2 N17 HN17 SING N N 30 UB2 C22 C18 SING N N 31 UB2 C18 C19 SING N N 32 UB2 C18 H18 SING N N 33 UB2 C23 C22 SING N N 34 UB2 C22 H22 SING N N 35 UB2 C22 H22A SING N N 36 UB2 C24 C23 SING N N 37 UB2 C25 C23 SING N N 38 UB2 C23 H23 SING N N 39 UB2 C25 H25 SING N N 40 UB2 C25 H25A SING N N 41 UB2 C25 H25B SING N N 42 UB2 C24 H24 SING N N 43 UB2 C24 H24A SING N N 44 UB2 C24 H24B SING N N 45 UB2 C19 O21 DOUB N N 46 UB2 C19 O20 SING N N 47 UB2 O20 HO20 SING N N 48 UB2 C15 H15 SING N N 49 UB2 C15 H15A SING N N 50 UB2 C15 H15B SING N N 51 UB2 O11 HO11 SING N N 52 UB2 C3 C2 SING Y N 53 UB2 C3 H3 SING N N 54 UB2 C1 C2 DOUB Y N 55 UB2 C2 H2 SING N N 56 UB2 C1 H1 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UB2 SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)C(NP(=O)(O)CNC(=O)OCc1ccccc1)C)CC(C)C" UB2 SMILES_CANONICAL CACTVS 3.341 "CC(C)C[C@H](NC(=O)[C@H](C)N[P@](O)(=O)CNC(=O)OCc1ccccc1)C(O)=O" UB2 SMILES CACTVS 3.341 "CC(C)C[CH](NC(=O)[CH](C)N[P](O)(=O)CNC(=O)OCc1ccccc1)C(O)=O" UB2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)C[C@@H](C(=O)O)NC(=O)[C@H](C)N[P@](=O)(CNC(=O)OCc1ccccc1)O" UB2 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)CC(C(=O)O)NC(=O)C(C)NP(=O)(CNC(=O)OCc1ccccc1)O" UB2 InChI InChI 1.03 "InChI=1S/C18H28N3O7P/c1-12(2)9-15(17(23)24)20-16(22)13(3)21-29(26,27)11-19-18(25)28-10-14-7-5-4-6-8-14/h4-8,12-13,15H,9-11H2,1-3H3,(H,19,25)(H,20,22)(H,23,24)(H2,21,26,27)/t13-,15-/m0/s1" UB2 InChIKey InChI 1.03 RFIATXCLWWIOFV-ZFWWWQNUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UB2 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-alanyl-L-leucine" UB2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(2S)-2-[(hydroxy-(phenylmethoxycarbonylaminomethyl)phosphoryl)amino]propanoyl]amino]-4-methyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UB2 "Create component" 2009-02-05 RCSB UB2 "Modify aromatic_flag" 2011-06-04 RCSB UB2 "Modify descriptor" 2011-06-04 RCSB #