data_UB3 # _chem_comp.id UB3 _chem_comp.name "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-valyl-L-leucine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-12-22 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.458 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UB3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ELF _chem_comp.pdbx_subcomponent_list "PHQ PGL VAL LEU" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UB3 C7 C7 C 0 1 N N N -12.844 41.021 8.871 3.682 -0.488 0.935 C1 PHQ 1 UB3 O29 O29 O 0 1 N N N -13.004 42.140 8.416 3.156 0.385 1.597 O1 PHQ 2 UB3 O6 O6 O 0 1 N N N -13.168 40.685 10.129 4.930 -0.313 0.460 O2 PHQ 3 UB3 C5 C5 C 0 1 N N N -13.768 41.742 10.902 5.587 0.942 0.779 C2 PHQ 4 UB3 C4 C4 C 0 1 Y N N -15.140 41.255 11.389 6.964 0.957 0.168 C3 PHQ 5 UB3 C30 C30 C 0 1 Y N N -15.292 40.659 12.647 8.044 0.475 0.886 C4 PHQ 6 UB3 C31 C31 C 0 1 Y N N -16.556 40.239 13.075 9.307 0.490 0.326 C5 PHQ 7 UB3 C1 C1 C 0 1 Y N N -17.674 40.449 12.260 9.492 0.985 -0.952 C6 PHQ 8 UB3 C2 C2 C 0 1 Y N N -17.529 41.073 11.017 8.412 1.465 -1.669 C7 PHQ 9 UB3 C3 C3 C 0 1 Y N N -16.266 41.484 10.589 7.148 1.452 -1.109 C8 PHQ 10 UB3 N8 N8 N 0 1 N N N -12.335 39.990 8.160 3.016 -1.630 0.675 N PGL 11 UB3 C9 C9 C 0 1 N N N -11.984 40.201 6.761 1.658 -1.820 1.191 C PGL 12 UB3 P10 P10 P 0 1 N N N -11.409 38.655 5.971 0.449 -1.337 -0.085 P PGL 13 UB3 O12 O12 O 0 1 N N N -12.496 37.642 6.124 0.641 -2.175 -1.289 O1 PGL 14 UB3 O11 O11 O 0 1 N N N -10.203 38.182 6.703 0.665 0.212 -0.470 O2 PGL 15 UB3 N13 N13 N 0 1 N N N -11.153 38.939 4.382 -1.111 -1.555 0.508 N VAL 16 UB3 C14 C14 C 0 1 N N S -9.961 38.322 3.748 -2.112 -1.079 -0.456 CA VAL 17 UB3 C18 C18 C 0 1 N N N -8.827 39.329 3.827 -3.286 -0.496 0.286 C VAL 18 UB3 O28 O28 O 0 1 N N N -7.693 38.911 3.679 -3.432 -0.726 1.468 O VAL 19 UB3 C15 C15 C 0 1 N N N -10.220 37.972 2.246 -2.585 -2.251 -1.319 CB VAL 20 UB3 C16 C16 C 0 1 N N N -10.236 39.241 1.357 -3.336 -3.258 -0.445 CG1 VAL 21 UB3 C17 C17 C 0 1 N N N -9.231 36.935 1.656 -3.517 -1.733 -2.415 CG2 VAL 22 UB3 N19 N19 N 0 1 N N N -9.074 40.645 4.048 -4.175 0.282 -0.364 N LEU 23 UB3 C20 C20 C 0 1 N N S -8.025 41.587 4.380 -5.254 0.938 0.378 CA LEU 24 UB3 C21 C21 C 0 1 N N N -8.391 42.466 5.546 -6.413 -0.013 0.526 C LEU 25 UB3 O22 O22 O 0 1 N N N -9.577 42.478 5.988 -6.345 -1.126 0.059 O LEU 26 UB3 C24 C24 C 0 1 N N N -7.288 42.278 3.240 -5.711 2.185 -0.382 CB LEU 27 UB3 C25 C25 C 0 1 N N N -7.815 42.413 1.803 -4.571 3.204 -0.423 CG LEU 28 UB3 C26 C26 C 0 1 N N N -9.356 42.408 1.641 -4.983 4.396 -1.288 CD1 LEU 29 UB3 C27 C27 C 0 1 N N N -7.242 43.702 1.135 -4.265 3.685 0.996 CD2 LEU 30 UB3 O23 O23 O 0 1 N N N -7.451 43.169 6.011 -7.522 0.375 1.176 OXT LEU 31 UB3 H5 H5 H 0 1 N N N -13.888 42.641 10.279 5.668 1.044 1.861 H21 PHQ 32 UB3 H5A H5A H 0 1 N N N -13.129 41.986 11.763 5.002 1.770 0.378 H22 PHQ 33 UB3 H30 H30 H 0 1 N N N -14.433 40.523 13.287 7.899 0.088 1.883 H41 PHQ 34 UB3 H31 H31 H 0 1 N N N -16.669 39.753 14.033 10.150 0.111 0.885 H51 PHQ 35 UB3 H1 H1 H 0 1 N N N -18.651 40.129 12.592 10.478 0.992 -1.391 H61 PHQ 36 UB3 H2 H2 H 0 1 N N N -18.393 41.236 10.390 8.556 1.852 -2.668 H71 PHQ 37 UB3 H3 H3 H 0 1 N N N -16.157 41.981 9.636 6.305 1.828 -1.669 H81 PHQ 38 UB3 HN8 HN8 H 0 1 N N N -12.201 39.096 8.587 3.435 -2.327 0.146 HN1 PGL 39 UB3 H9 H9 H 0 1 N N N -12.873 40.564 6.224 1.512 -2.868 1.452 H1 PGL 40 UB3 H9A H9A H 0 1 N N N -11.178 40.947 6.707 1.517 -1.202 2.078 H2 PGL 41 UB3 HO11 HO11 H 0 0 N N N -10.386 37.342 7.107 0.555 0.821 0.273 HO2 PGL 42 UB3 HN13 HN13 H 0 0 N N N -11.952 38.588 3.894 -1.273 -2.520 0.752 H VAL 43 UB3 H14 H14 H 0 1 N N N -9.718 37.387 4.274 -1.668 -0.315 -1.093 HA VAL 44 UB3 H15 H15 H 0 1 N N N -11.215 37.503 2.238 -1.723 -2.738 -1.775 HB VAL 45 UB3 H16 H16 H 0 1 N N N -10.420 38.954 0.311 -4.227 -2.786 -0.031 HG11 VAL 46 UB3 H16A H16A H 0 0 N N N -11.034 39.917 1.698 -3.627 -4.117 -1.049 HG12 VAL 47 UB3 H16B H16B H 0 0 N N N -9.265 39.753 1.431 -2.688 -3.587 0.368 HG13 VAL 48 UB3 H17 H17 H 0 1 N N N -9.482 36.747 0.602 -2.952 -1.108 -3.108 HG21 VAL 49 UB3 H17A H17A H 0 0 N N N -8.205 37.327 1.724 -3.948 -2.576 -2.955 HG22 VAL 50 UB3 H17B H17B H 0 0 N N N -9.303 35.996 2.224 -4.316 -1.144 -1.965 HG23 VAL 51 UB3 HN19 HN19 H 0 0 N N N -10.015 40.977 3.979 -4.100 0.407 -1.322 H LEU 52 UB3 H20 H20 H 0 1 N N N -7.209 40.934 4.723 -4.893 1.227 1.366 HA LEU 53 UB3 H24 H24 H 0 1 N N N -7.154 43.314 3.584 -5.989 1.908 -1.399 HB2 LEU 54 UB3 H24A H24A H 0 0 N N N -6.347 41.717 3.138 -6.572 2.623 0.123 HB3 LEU 55 UB3 H25 H25 H 0 1 N N N -7.461 41.500 1.302 -3.682 2.737 -0.848 HG LEU 56 UB3 H26 H26 H 0 1 N N N -9.614 42.510 0.576 -5.872 4.863 -0.864 HD11 LEU 57 UB3 H26A H26A H 0 0 N N N -9.762 41.462 2.027 -4.171 5.122 -1.318 HD12 LEU 58 UB3 H26B H26B H 0 0 N N N -9.786 43.249 2.204 -5.201 4.053 -2.300 HD13 LEU 59 UB3 H27 H27 H 0 1 N N N -7.627 43.786 0.108 -3.971 2.836 1.613 HD21 LEU 60 UB3 H27A H27A H 0 0 N N N -7.551 44.584 1.715 -3.453 4.411 0.967 HD22 LEU 61 UB3 H27B H27B H 0 0 N N N -6.144 43.645 1.111 -5.154 4.152 1.421 HD23 LEU 62 UB3 HO23 HO23 H 0 0 N N N -7.776 43.696 6.732 -8.239 -0.270 1.245 HXT LEU 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UB3 C2 C1 DOUB Y N 1 UB3 C1 C31 SING Y N 2 UB3 C1 H1 SING N N 3 UB3 C3 C2 SING Y N 4 UB3 C2 H2 SING N N 5 UB3 C3 C4 DOUB Y N 6 UB3 C3 H3 SING N N 7 UB3 C5 C4 SING N N 8 UB3 C4 C30 SING Y N 9 UB3 O6 C5 SING N N 10 UB3 C5 H5 SING N N 11 UB3 C5 H5A SING N N 12 UB3 C7 O6 SING N N 13 UB3 N8 C7 SING N N 14 UB3 O29 C7 DOUB N N 15 UB3 C9 N8 SING N N 16 UB3 N8 HN8 SING N N 17 UB3 P10 C9 SING N N 18 UB3 C9 H9 SING N N 19 UB3 C9 H9A SING N N 20 UB3 N13 P10 SING N N 21 UB3 P10 O12 DOUB N N 22 UB3 P10 O11 SING N N 23 UB3 O11 HO11 SING N N 24 UB3 C14 N13 SING N N 25 UB3 N13 HN13 SING N N 26 UB3 C15 C14 SING N N 27 UB3 C14 C18 SING N N 28 UB3 C14 H14 SING N N 29 UB3 C16 C15 SING N N 30 UB3 C17 C15 SING N N 31 UB3 C15 H15 SING N N 32 UB3 C16 H16 SING N N 33 UB3 C16 H16A SING N N 34 UB3 C16 H16B SING N N 35 UB3 C17 H17 SING N N 36 UB3 C17 H17A SING N N 37 UB3 C17 H17B SING N N 38 UB3 O28 C18 DOUB N N 39 UB3 C18 N19 SING N N 40 UB3 N19 C20 SING N N 41 UB3 N19 HN19 SING N N 42 UB3 C24 C20 SING N N 43 UB3 C20 C21 SING N N 44 UB3 C20 H20 SING N N 45 UB3 C21 O22 DOUB N N 46 UB3 C21 O23 SING N N 47 UB3 O23 HO23 SING N N 48 UB3 C30 C31 DOUB Y N 49 UB3 C30 H30 SING N N 50 UB3 C31 H31 SING N N 51 UB3 C25 C24 SING N N 52 UB3 C24 H24 SING N N 53 UB3 C24 H24A SING N N 54 UB3 C27 C25 SING N N 55 UB3 C26 C25 SING N N 56 UB3 C25 H25 SING N N 57 UB3 C26 H26 SING N N 58 UB3 C26 H26A SING N N 59 UB3 C26 H26B SING N N 60 UB3 C27 H27 SING N N 61 UB3 C27 H27A SING N N 62 UB3 C27 H27B SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UB3 SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)C(NP(=O)(O)CNC(=O)OCc1ccccc1)C(C)C)CC(C)C" UB3 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)[C@@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(C)C)C(O)=O" UB3 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(C)C)C(O)=O" UB3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)C[C@@H](C(=O)O)NC(=O)[C@H](C(C)C)N[P@](=O)(CNC(=O)OCc1ccccc1)O" UB3 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CC(C(=O)O)NC(=O)C(C(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" UB3 InChI InChI 1.03 "InChI=1S/C20H32N3O7P/c1-13(2)10-16(19(25)26)22-18(24)17(14(3)4)23-31(28,29)12-21-20(27)30-11-15-8-6-5-7-9-15/h5-9,13-14,16-17H,10-12H2,1-4H3,(H,21,27)(H,22,24)(H,25,26)(H2,23,28,29)/t16-,17-/m0/s1" UB3 InChIKey InChI 1.03 NFEZDCCCWWWKAJ-IRXDYDNUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UB3 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-valyl-L-leucine" UB3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-[[(2S)-2-[[hydroxy(phenylmethoxycarbonylaminomethyl)phosphoryl]amino]-3-methyl-butanoyl]amino]-4-methyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UB3 "Create component" 2008-12-22 RCSB UB3 "Modify subcomponent list" 2011-03-28 RCSB UB3 "Modify aromatic_flag" 2011-06-04 RCSB UB3 "Modify descriptor" 2011-06-04 RCSB #