data_UBH # _chem_comp.id UBH _chem_comp.name 3-O-methyl-alpha-D-rhamnopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O5" _chem_comp.mon_nstd_parent_comp_id XXR _chem_comp.pdbx_synonyms 6-deoxy-3-O-methyl-alpha-D-mannopyranose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-16 _chem_comp.pdbx_modified_date 2022-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.183 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DNC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBH C01 C1 C 0 1 N N N 153.227 143.809 90.334 3.261 -0.333 -0.632 C01 UBH 1 UBH C3 C2 C 0 1 N N S 152.280 142.257 91.813 0.901 -0.178 -0.243 C3 UBH 2 UBH C4 C3 C 0 1 N N R 151.549 140.920 91.849 -0.210 -1.116 0.238 C4 UBH 3 UBH C5 C4 C 0 1 N N R 151.319 140.506 93.297 -1.565 -0.559 -0.204 C5 UBH 4 UBH C1 C5 C 0 1 N N S 153.237 141.642 94.033 -0.747 1.694 -0.136 C1 UBH 5 UBH C2 C6 C 0 1 N N S 153.558 142.150 92.633 0.642 1.227 0.309 C2 UBH 6 UBH C6 C7 C 0 1 N N N 150.656 139.133 93.321 -2.684 -1.459 0.325 C6 UBH 7 UBH O3 O1 O 0 1 N N N 152.618 142.560 90.492 2.164 -0.651 0.228 O3 UBH 8 UBH O5 O2 O 0 1 N N N 152.543 140.424 93.964 -1.729 0.761 0.318 O5 UBH 9 UBH O2 O3 O 0 1 N N N 154.423 141.248 92.004 0.701 1.198 1.736 O2 UBH 10 UBH O4 O4 O 0 1 N N N 150.314 141.041 91.208 -0.018 -2.414 -0.329 O4 UBH 11 UBH O1 O5 O 0 1 N Y N 152.475 142.592 94.713 -0.789 1.774 -1.562 O1 UBH 12 UBH H6 H1 H 0 1 N N N 153.461 143.972 89.272 3.341 0.749 -0.735 H6 UBH 13 UBH H7 H2 H 0 1 N N N 152.544 144.597 90.684 4.183 -0.727 -0.205 H7 UBH 14 UBH H8 H3 H 0 1 N N N 154.156 143.841 90.923 3.095 -0.780 -1.612 H8 UBH 15 UBH H3 H4 H 0 1 N N N 151.635 143.036 92.246 0.905 -0.146 -1.333 H3 UBH 16 UBH H4 H5 H 0 1 N N N 152.171 140.160 91.355 -0.181 -1.186 1.326 H4 UBH 17 UBH H5 H6 H 0 1 N N N 150.654 141.237 93.781 -1.608 -0.528 -1.292 H5 UBH 18 UBH H1 H7 H 0 1 N N N 154.190 141.489 94.561 -0.954 2.676 0.289 H1 UBH 19 UBH H2 H8 H 0 1 N N N 154.020 143.145 92.710 1.397 1.914 -0.074 H2 UBH 20 UBH H61 H9 H 0 1 N N N 150.486 138.826 94.363 -2.641 -1.490 1.414 H61 UBH 21 UBH H62 H10 H 0 1 N N N 149.693 139.182 92.791 -3.649 -1.063 0.010 H62 UBH 22 UBH H63 H11 H 0 1 N N N 151.311 138.401 92.825 -2.558 -2.467 -0.072 H63 UBH 23 UBH HO2 H12 H 0 1 N N N 155.225 141.174 92.508 0.546 2.056 2.154 HO2 UBH 24 UBH HO4 H13 H 0 1 N N N 149.861 140.206 91.232 -0.687 -3.061 -0.066 HO4 UBH 25 UBH HO1 H14 H 0 1 N N N 152.276 142.273 95.586 -1.641 2.063 -1.915 HO1 UBH 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBH C01 O3 SING N N 1 UBH O3 C3 SING N N 2 UBH O4 C4 SING N N 3 UBH C3 C4 SING N N 4 UBH C3 C2 SING N N 5 UBH C4 C5 SING N N 6 UBH O2 C2 SING N N 7 UBH C2 C1 SING N N 8 UBH C5 C6 SING N N 9 UBH C5 O5 SING N N 10 UBH O5 C1 SING N N 11 UBH C1 O1 SING N N 12 UBH C01 H6 SING N N 13 UBH C01 H7 SING N N 14 UBH C01 H8 SING N N 15 UBH C3 H3 SING N N 16 UBH C4 H4 SING N N 17 UBH C5 H5 SING N N 18 UBH C1 H1 SING N N 19 UBH C2 H2 SING N N 20 UBH C6 H61 SING N N 21 UBH C6 H62 SING N N 22 UBH C6 H63 SING N N 23 UBH O2 HO2 SING N N 24 UBH O4 HO4 SING N N 25 UBH O1 HO1 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBH SMILES ACDLabs 12.01 "OC1C(OC)C(O)C(C)OC1O" UBH InChI InChI 1.06 "InChI=1S/C7H14O5/c1-3-4(8)6(11-2)5(9)7(10)12-3/h3-10H,1-2H3/t3-,4-,5+,6+,7+/m1/s1" UBH InChIKey InChI 1.06 OEKPKBBXXDGXNB-VEIUFWFVSA-N UBH SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@H](O)[C@@H](C)O[C@H](O)[C@H]1O" UBH SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](C)O[CH](O)[CH]1O" UBH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)OC)O" UBH SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)O)OC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UBH "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-3-O-methyl-alpha-D-mannopyranose UBH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S},5~{R},6~{R})-4-methoxy-6-methyl-oxane-2,3,5-triol" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support UBH "CARBOHYDRATE ANOMER" alpha PDB ? UBH "CARBOHYDRATE ISOMER" D PDB ? UBH "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? UBH "CARBOHYDRATE RING" pyranose PDB ? # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UBH _pdbx_chem_comp_synonyms.name 6-deoxy-3-O-methyl-alpha-D-mannopyranose _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_related.comp_id UBH _pdbx_chem_comp_related.related_comp_id XXR _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 UBH C3 XXR C3 "Carbohydrate core" 2 UBH C4 XXR C4 "Carbohydrate core" 3 UBH C5 XXR C5 "Carbohydrate core" 4 UBH C1 XXR C1 "Carbohydrate core" 5 UBH C2 XXR C2 "Carbohydrate core" 6 UBH C6 XXR C6 "Carbohydrate core" 7 UBH O3 XXR O3 "Carbohydrate core" 8 UBH O5 XXR O5 "Carbohydrate core" 9 UBH O2 XXR O2 "Carbohydrate core" 10 UBH O4 XXR O4 "Carbohydrate core" 11 UBH O1 XXR O1 "Carbohydrate core" 12 UBH H3 XXR H3 "Carbohydrate core" 13 UBH H4 XXR H4 "Carbohydrate core" 14 UBH H5 XXR H5 "Carbohydrate core" 15 UBH H1 XXR H1 "Carbohydrate core" 16 UBH H2 XXR H2 "Carbohydrate core" 17 UBH H61 XXR H61 "Carbohydrate core" 18 UBH H62 XXR H62 "Carbohydrate core" 19 UBH H63 XXR H63 "Carbohydrate core" 20 UBH HO2 XXR HO2 "Carbohydrate core" 21 UBH HO4 XXR HO4 "Carbohydrate core" 22 UBH HO1 XXR HO1 "Carbohydrate core" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBH "Create component" 2022-08-16 RCSB UBH "Modify atom id" 2022-08-17 RCSB UBH "Modify name" 2022-08-26 RCSB UBH "Initial release" 2022-09-21 RCSB #