data_UBK # _chem_comp.id UBK _chem_comp.name "(2~{R},5~{S},12~{S})-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15-dimethyl-12-thiophen-2-yl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^{5,10}]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H41 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-01 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 663.780 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CCG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBK CBU C1 C 0 1 N N N 14.370 -3.731 7.833 -8.304 1.791 -0.047 CBU UBK 1 UBK OBT O1 O 0 1 N N N 15.057 -2.512 8.090 -8.448 0.381 -0.231 OBT UBK 2 UBK CAF C2 C 0 1 Y N N 14.522 -1.632 9.032 -7.305 -0.345 -0.356 CAF UBK 3 UBK CAG C3 C 0 1 Y N N 13.289 -1.778 9.625 -6.072 0.285 -0.298 CAG UBK 4 UBK CAE C4 C 0 1 Y N N 15.412 -0.628 9.399 -7.370 -1.724 -0.538 CAE UBK 5 UBK OBR O2 O 0 1 N N N 16.621 -0.610 8.734 -8.578 -2.347 -0.590 OBR UBK 6 UBK CBS C5 C 0 1 N N N 17.600 0.365 9.084 -8.568 -3.764 -0.778 CBS UBK 7 UBK CAD C6 C 0 1 Y N N 15.045 0.329 10.328 -6.203 -2.459 -0.665 CAD UBK 8 UBK CAC C7 C 0 1 Y N N 13.788 0.194 10.928 -4.976 -1.823 -0.612 CAC UBK 9 UBK CAA C8 C 0 1 Y N N 12.904 -0.822 10.596 -4.911 -0.455 -0.426 CAA UBK 10 UBK CAB C9 C 0 1 N N N 11.612 -0.928 11.282 -3.571 0.232 -0.363 CAB UBK 11 UBK CAH C10 C 0 1 N N N 10.392 -0.685 10.329 -3.085 0.270 1.087 CAH UBK 12 UBK CAI C11 C 0 1 N N R 10.225 0.771 10.103 -1.671 0.852 1.136 CAI UBK 13 UBK OAK O3 O 0 1 N N N 9.344 0.921 8.921 -0.797 0.076 0.275 OAK UBK 14 UBK C C12 C 0 1 N N N 9.928 1.441 7.776 -0.433 -1.145 0.695 C UBK 15 UBK O O4 O 0 1 N N N 11.115 1.676 7.690 -0.854 -1.577 1.743 O UBK 16 UBK CA C13 C 0 1 N N S 8.945 1.663 6.722 0.502 -1.976 -0.146 CA UBK 17 UBK CB C14 C 0 1 N N N 9.178 3.080 6.183 0.036 -3.431 -0.157 CB UBK 18 UBK CAU C15 C 0 1 N N N 8.685 4.164 7.198 0.195 -4.031 1.241 CAU UBK 19 UBK CAV C16 C 0 1 N N N 7.216 4.000 7.417 1.673 -4.008 1.638 CAV UBK 20 UBK CAW C17 C 0 1 N N N 6.899 2.592 7.906 2.167 -2.560 1.678 CAW UBK 21 UBK N N1 N 0 1 N N N 7.529 1.518 6.987 1.856 -1.899 0.410 N UBK 22 UBK CAY C18 C 0 1 N N N 6.776 0.589 6.359 2.811 -1.215 -0.251 CAY UBK 23 UBK OBA O5 O 0 1 N N N 7.383 -0.300 5.755 2.557 -0.702 -1.320 OBA UBK 24 UBK CAZ C19 C 0 1 N N S 5.360 0.569 6.480 4.193 -1.085 0.334 CAZ UBK 25 UBK CBC C20 C 0 1 Y N N 4.676 -0.156 5.398 5.025 -2.278 -0.059 CBC UBK 26 UBK SBN S1 S 0 1 Y N N 5.151 -1.526 4.575 5.820 -2.492 -1.614 SBN UBK 27 UBK CBO C21 C 0 1 Y N N 3.707 -1.701 3.659 6.462 -4.049 -1.105 CBO UBK 28 UBK CBP C22 C 0 1 Y N N 2.899 -0.717 4.023 6.065 -4.310 0.141 CBP UBK 29 UBK CBQ C23 C 0 1 Y N N 3.410 0.152 4.948 5.276 -3.331 0.720 CBQ UBK 30 UBK NBB N2 N 0 1 N N N 4.896 0.020 7.943 4.812 0.153 -0.199 NBB UBK 31 UBK CBD C24 C 0 1 N N N 3.706 0.454 8.521 4.282 1.315 0.296 CBD UBK 32 UBK OBJ O6 O 0 1 N N N 2.999 1.329 7.971 3.389 1.288 1.116 OBJ UBK 33 UBK CBE C25 C 0 1 N N N 3.254 -0.142 9.776 4.833 2.628 -0.198 CBE UBK 34 UBK CBK C26 C 0 1 N N N 2.852 -1.576 9.409 4.849 2.635 -1.728 CBK UBK 35 UBK CBL C27 C 0 1 N N N 2.065 0.647 10.405 6.256 2.819 0.331 CBL UBK 36 UBK NBM N3 N 0 1 N N N 4.249 -0.283 10.844 3.971 3.722 0.296 NBM UBK 37 UBK CBH C28 C 0 1 N N N 4.977 0.779 11.296 2.649 3.639 -0.024 CBH UBK 38 UBK OBI O7 O 0 1 N N N 4.898 1.885 10.708 2.232 2.710 -0.683 OBI UBK 39 UBK CBG C29 C 0 1 N N N 5.681 0.521 12.528 1.713 4.719 0.454 CBG UBK 40 UBK OBF O8 O 0 1 N N N 6.324 1.726 12.993 0.623 4.849 -0.460 OBF UBK 41 UBK CAM C30 C 0 1 Y N N 7.629 1.968 12.577 -0.539 4.226 -0.129 CAM UBK 42 UBK CAL C31 C 0 1 Y N N 8.275 1.219 11.552 -0.517 2.913 0.320 CAL UBK 43 UBK CAJ C32 C 0 1 Y N N 9.582 1.480 11.220 -1.697 2.281 0.655 CAJ UBK 44 UBK CAP C33 C 0 1 Y N N 10.217 2.550 11.808 -2.899 2.954 0.547 CAP UBK 45 UBK CAO C34 C 0 1 Y N N 9.603 3.320 12.818 -2.923 4.264 0.102 CAO UBK 46 UBK CAN C35 C 0 1 Y N N 8.307 3.030 13.144 -1.746 4.900 -0.236 CAN UBK 47 UBK HCD H1 H 0 1 N N N 14.917 -4.307 7.072 -7.779 2.217 -0.902 HCD UBK 48 UBK HCE H2 H 0 1 N N N 14.305 -4.318 8.761 -9.290 2.248 0.039 HCE UBK 49 UBK HBU H3 H 0 1 N N N 13.356 -3.510 7.467 -7.734 1.982 0.862 HBU UBK 50 UBK HAG H4 H 0 1 N N N 12.636 -2.596 9.358 -6.018 1.354 -0.153 HAG UBK 51 UBK HCC H5 H 0 1 N N N 18.493 0.230 8.456 -8.030 -4.236 0.043 HCC UBK 52 UBK HBS H6 H 0 1 N N N 17.188 1.372 8.924 -9.594 -4.134 -0.802 HBS UBK 53 UBK HCB H7 H 0 1 N N N 17.875 0.245 10.142 -8.075 -4.002 -1.720 HCB UBK 54 UBK HAE H8 H 0 1 N N N 15.702 1.148 10.580 -6.251 -3.529 -0.805 HAE UBK 55 UBK HAD H9 H 0 1 N N N 13.494 0.911 11.681 -4.067 -2.397 -0.711 HAD UBK 56 UBK HAC H10 H 0 1 N N N 11.581 -0.181 12.089 -2.853 -0.315 -0.973 HAC UBK 57 UBK HAB H11 H 0 1 N N N 11.525 -1.937 11.713 -3.667 1.250 -0.740 HAB UBK 58 UBK HAI H12 H 0 1 N N N 9.480 -1.092 10.790 -3.755 0.893 1.679 HAI UBK 59 UBK HAH H13 H 0 1 N N N 10.572 -1.187 9.367 -3.076 -0.742 1.494 HAH UBK 60 UBK HAJ H14 H 0 1 N N N 11.205 1.225 9.891 -1.298 0.819 2.160 HAJ UBK 61 UBK HA H15 H 0 1 N N N 9.194 0.977 5.899 0.508 -1.588 -1.166 HA UBK 62 UBK HB2 H16 H 0 1 N N N 10.254 3.222 6.002 -1.012 -3.474 -0.453 HB2 UBK 63 UBK HB1 H17 H 0 1 N N N 8.628 3.198 5.238 0.637 -3.999 -0.867 HB1 UBK 64 UBK HAU H18 H 0 1 N N N 9.215 4.041 8.154 -0.383 -3.446 1.957 HAU UBK 65 UBK HB3 H19 H 0 1 N N N 8.887 5.166 6.793 -0.165 -5.060 1.238 HB3 UBK 66 UBK HAV H20 H 0 1 N N N 6.879 4.728 8.170 1.792 -4.459 2.623 HAV UBK 67 UBK HB4 H21 H 0 1 N N N 6.687 4.181 6.470 2.254 -4.571 0.908 HB4 UBK 68 UBK HB5 H22 H 0 1 N N N 5.808 2.455 7.920 1.674 -2.031 2.493 HB5 UBK 69 UBK HAW H23 H 0 1 N N N 7.297 2.469 8.924 3.245 -2.549 1.837 HAW UBK 70 UBK HAZ H24 H 0 1 N N N 5.010 1.611 6.438 4.128 -1.024 1.421 HAZ UBK 71 UBK HBO H25 H 0 1 N N N 3.499 -2.467 2.927 7.080 -4.695 -1.711 HBO UBK 72 UBK HBP H26 H 0 1 N N N 1.904 -0.608 3.617 6.342 -5.216 0.661 HBP UBK 73 UBK HBQ H27 H 0 1 N N N 2.863 1.014 5.299 4.888 -3.416 1.724 HBQ UBK 74 UBK HBB H28 H 0 1 N N N 5.472 -0.636 8.431 5.534 0.141 -0.847 HBB UBK 75 UBK HBK H29 H 0 1 N N N 2.496 -2.099 10.309 3.834 2.504 -2.102 HBK UBK 76 UBK HB7 H30 H 0 1 N N N 2.049 -1.551 8.658 5.248 3.585 -2.083 HB7 UBK 77 UBK HB8 H31 H 0 1 N N N 3.723 -2.107 8.997 5.477 1.820 -2.088 HB8 UBK 78 UBK HCA H32 H 0 1 N N N 1.760 0.163 11.345 6.888 2.004 -0.025 HCA UBK 79 UBK HBL H33 H 0 1 N N N 2.379 1.681 10.610 6.653 3.769 -0.027 HBL UBK 80 UBK HB9 H34 H 0 1 N N N 1.218 0.653 9.704 6.242 2.818 1.421 HB9 UBK 81 UBK HBM H35 H 0 1 N N N 4.398 -1.183 11.253 4.327 4.458 0.818 HBM UBK 82 UBK HBG H36 H 0 1 N N N 4.967 0.173 13.289 1.330 4.457 1.440 HBG UBK 83 UBK HB6 H37 H 0 1 N N N 6.442 -0.255 12.357 2.251 5.665 0.513 HB6 UBK 84 UBK HAL H38 H 0 1 N N N 7.734 0.442 11.033 0.422 2.387 0.406 HAL UBK 85 UBK HAP H39 H 0 1 N N N 11.215 2.808 11.487 -3.822 2.458 0.810 HAP UBK 86 UBK HAO H40 H 0 1 N N N 10.139 4.113 13.318 -3.863 4.788 0.018 HAO UBK 87 UBK HAN H41 H 0 1 N N N 7.798 3.650 13.867 -1.765 5.922 -0.583 HAN UBK 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBK CBO CBP DOUB Y N 1 UBK CBO SBN SING Y N 2 UBK CBP CBQ SING Y N 3 UBK SBN CBC SING Y N 4 UBK CBQ CBC DOUB Y N 5 UBK CBC CAZ SING N N 6 UBK OBA CAY DOUB N N 7 UBK CB CA SING N N 8 UBK CB CAU SING N N 9 UBK CAY CAZ SING N N 10 UBK CAY N SING N N 11 UBK CAZ NBB SING N N 12 UBK CA N SING N N 13 UBK CA C SING N N 14 UBK N CAW SING N N 15 UBK CAU CAV SING N N 16 UBK CAV CAW SING N N 17 UBK O C DOUB N N 18 UBK C OAK SING N N 19 UBK CBU OBT SING N N 20 UBK NBB CBD SING N N 21 UBK OBJ CBD DOUB N N 22 UBK OBT CAF SING N N 23 UBK CBD CBE SING N N 24 UBK OBR CBS SING N N 25 UBK OBR CAE SING N N 26 UBK OAK CAI SING N N 27 UBK CAF CAE DOUB Y N 28 UBK CAF CAG SING Y N 29 UBK CAE CAD SING Y N 30 UBK CBK CBE SING N N 31 UBK CAG CAA DOUB Y N 32 UBK CBE CBL SING N N 33 UBK CBE NBM SING N N 34 UBK CAI CAH SING N N 35 UBK CAI CAJ SING N N 36 UBK CAD CAC DOUB Y N 37 UBK CAH CAB SING N N 38 UBK CAA CAC SING Y N 39 UBK CAA CAB SING N N 40 UBK OBI CBH DOUB N N 41 UBK NBM CBH SING N N 42 UBK CAJ CAL DOUB Y N 43 UBK CAJ CAP SING Y N 44 UBK CBH CBG SING N N 45 UBK CAL CAM SING Y N 46 UBK CAP CAO DOUB Y N 47 UBK CBG OBF SING N N 48 UBK CAM OBF SING N N 49 UBK CAM CAN DOUB Y N 50 UBK CAO CAN SING Y N 51 UBK CBU HCD SING N N 52 UBK CBU HCE SING N N 53 UBK CBU HBU SING N N 54 UBK CAG HAG SING N N 55 UBK CBS HCC SING N N 56 UBK CBS HBS SING N N 57 UBK CBS HCB SING N N 58 UBK CAD HAE SING N N 59 UBK CAC HAD SING N N 60 UBK CAB HAC SING N N 61 UBK CAB HAB SING N N 62 UBK CAH HAI SING N N 63 UBK CAH HAH SING N N 64 UBK CAI HAJ SING N N 65 UBK CA HA SING N N 66 UBK CB HB2 SING N N 67 UBK CB HB1 SING N N 68 UBK CAU HAU SING N N 69 UBK CAU HB3 SING N N 70 UBK CAV HAV SING N N 71 UBK CAV HB4 SING N N 72 UBK CAW HB5 SING N N 73 UBK CAW HAW SING N N 74 UBK CAZ HAZ SING N N 75 UBK CBO HBO SING N N 76 UBK CBP HBP SING N N 77 UBK CBQ HBQ SING N N 78 UBK NBB HBB SING N N 79 UBK CBK HBK SING N N 80 UBK CBK HB7 SING N N 81 UBK CBK HB8 SING N N 82 UBK CBL HCA SING N N 83 UBK CBL HBL SING N N 84 UBK CBL HB9 SING N N 85 UBK NBM HBM SING N N 86 UBK CBG HBG SING N N 87 UBK CBG HB6 SING N N 88 UBK CAL HAL SING N N 89 UBK CAP HAP SING N N 90 UBK CAO HAO SING N N 91 UBK CAN HAN SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBK InChI InChI 1.06 "InChI=1S/C35H41N3O8S/c1-35(2)34(42)36-31(29-12-8-18-47-29)32(40)38-17-6-5-11-25(38)33(41)46-26(15-13-22-14-16-27(43-3)28(19-22)44-4)23-9-7-10-24(20-23)45-21-30(39)37-35/h7-10,12,14,16,18-20,25-26,31H,5-6,11,13,15,17,21H2,1-4H3,(H,36,42)(H,37,39)/t25-,26+,31+/m0/s1" UBK InChIKey InChI 1.06 UGPRMAAAPBGSML-ADRXYBOHSA-N UBK SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CC[C@H]2OC(=O)[C@@H]3CCCCN3C(=O)[C@H](NC(=O)C(C)(C)NC(=O)COc4cccc2c4)c5sccc5)cc1OC" UBK SMILES CACTVS 3.385 "COc1ccc(CC[CH]2OC(=O)[CH]3CCCCN3C(=O)[CH](NC(=O)C(C)(C)NC(=O)COc4cccc2c4)c5sccc5)cc1OC" UBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N[C@@H](C(=O)N2CCCC[C@H]2C(=O)O[C@@H](c3cccc(c3)OCC(=O)N1)CCc4ccc(c(c4)OC)OC)c5cccs5)C" UBK SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)NC(C(=O)N2CCCCC2C(=O)OC(c3cccc(c3)OCC(=O)N1)CCc4ccc(c(c4)OC)OC)c5cccs5)C" # _pdbx_chem_comp_identifier.comp_id UBK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},5~{S},12~{S})-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15-dimethyl-12-thiophen-2-yl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^{5,10}]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBK "Create component" 2023-02-01 PDBE UBK "Initial release" 2023-04-26 RCSB #