data_UBL # _chem_comp.id UBL _chem_comp.name "[(2R)-2-oxidanyl-3-phosphonooxy-propyl] (Z)-octadec-9-enoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H41 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-25 _chem_comp.pdbx_modified_date 2023-10-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 436.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IZB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBL OAA O1 O 0 1 N N N 97.018 106.293 63.576 11.011 0.874 1.526 OAA UBL 1 UBL OAB O2 O 0 1 N N N 97.260 104.097 64.649 11.051 -0.457 -0.618 OAB UBL 2 UBL PAC P1 P 0 1 N N N 97.228 105.581 64.887 10.675 0.856 -0.049 PAC UBL 3 UBL OAE O3 O 0 1 N N N 103.462 107.067 64.649 3.466 -1.706 0.552 OAE UBL 4 UBL OAF O4 O 0 1 N N N 98.672 106.054 65.554 9.099 1.104 -0.264 OAF UBL 5 UBL CAG C1 C 0 1 N N N 99.126 105.384 66.712 8.099 0.186 0.183 CAG UBL 6 UBL CAH C2 C 0 1 N N R 100.483 104.721 66.348 6.714 0.725 -0.181 CAH UBL 7 UBL CAI C3 C 0 1 N N N 101.552 105.755 65.912 5.651 -0.313 0.185 CAI UBL 8 UBL OAJ O5 O 0 1 N N N 102.524 105.078 65.135 4.350 0.147 -0.267 OAJ UBL 9 UBL CAK C4 C 0 1 N N N 103.609 105.896 64.746 3.302 -0.655 -0.022 CAK UBL 10 UBL CAL C5 C 0 1 N N N 104.990 105.279 64.452 1.920 -0.244 -0.461 CAL UBL 11 UBL CAM C6 C 0 1 N N N 106.132 106.131 65.059 0.915 -1.326 -0.063 CAM UBL 12 UBL CAN C7 C 0 1 N N N 106.304 105.897 66.586 -0.488 -0.909 -0.509 CAN UBL 13 UBL CAO C8 C 0 1 N N N 107.748 106.243 67.062 -1.493 -1.992 -0.111 CAO UBL 14 UBL CAP C9 C 0 1 N N N 108.312 105.205 68.075 -2.896 -1.575 -0.557 CAP UBL 15 UBL CAQ C10 C 0 1 N N N 108.064 105.621 69.553 -3.901 -2.657 -0.159 CAQ UBL 16 UBL CAR C11 C 0 1 N N N 109.240 105.175 70.459 -5.303 -2.240 -0.605 CAR UBL 17 UBL CAS C12 C 0 1 N N N 108.771 104.745 71.879 -6.293 -3.306 -0.213 CAS UBL 18 UBL CAT C13 C 0 1 N N N 108.953 104.586 73.199 -7.365 -2.986 0.469 CAT UBL 19 UBL CAU C14 C 0 1 N N N 110.359 105.051 73.656 -7.697 -1.537 0.714 CAU UBL 20 UBL CAV C15 C 0 1 N N N 110.325 105.685 75.076 -9.126 -1.255 0.246 CAV UBL 21 UBL CAW C16 C 0 1 N N N 111.213 104.883 76.074 -9.463 0.217 0.496 CAW UBL 22 UBL CAX C17 C 0 1 N N N 112.529 105.607 76.496 -10.892 0.499 0.028 CAX UBL 23 UBL CAY C18 C 0 1 N N N 112.681 105.688 78.051 -11.229 1.971 0.277 CAY UBL 24 UBL CAZ C19 C 0 1 N N N 114.083 105.242 78.570 -12.658 2.253 -0.190 CAZ UBL 25 UBL CBA C20 C 0 1 N N N 114.263 105.525 80.089 -12.995 3.725 0.059 CBA UBL 26 UBL CBB C21 C 0 1 N N N 115.466 104.757 80.695 -14.424 4.007 -0.409 CBB UBL 27 UBL OBC O6 O 0 1 N N N 100.967 104.075 67.503 6.468 1.933 0.542 OBC UBL 28 UBL H1 H1 H 0 1 N N N 96.950 105.655 62.876 10.791 1.706 1.966 H1 UBL 29 UBL H3 H3 H 0 1 N N N 99.264 106.101 67.534 8.251 -0.780 -0.299 H3 UBL 30 UBL H4 H4 H 0 1 N N N 98.399 104.616 67.014 8.171 0.069 1.264 H4 UBL 31 UBL H5 H5 H 0 1 N N N 100.323 104.002 65.531 6.672 0.927 -1.251 H5 UBL 32 UBL H6 H6 H 0 1 N N N 102.026 106.199 66.800 5.889 -1.262 -0.297 H6 UBL 33 UBL H7 H7 H 0 1 N N N 101.081 106.548 65.313 5.633 -0.449 1.266 H7 UBL 34 UBL H8 H8 H 0 1 N N N 105.029 104.268 64.884 1.650 0.697 0.019 H8 UBL 35 UBL H9 H9 H 0 1 N N N 105.130 105.218 63.363 1.906 -0.116 -1.544 H9 UBL 36 UBL H10 H10 H 0 1 N N N 107.074 105.869 64.554 1.184 -2.267 -0.544 H10 UBL 37 UBL H11 H11 H 0 1 N N N 105.908 107.194 64.888 0.929 -1.454 1.019 H11 UBL 38 UBL H12 H12 H 0 1 N N N 105.588 106.533 67.127 -0.757 0.031 -0.029 H12 UBL 39 UBL H13 H13 H 0 1 N N N 106.098 104.840 66.810 -0.502 -0.781 -1.592 H13 UBL 40 UBL H14 H14 H 0 1 N N N 108.410 106.273 66.184 -1.223 -2.932 -0.591 H14 UBL 41 UBL H15 H15 H 0 1 N N N 107.732 107.232 67.544 -1.479 -2.120 0.971 H15 UBL 42 UBL H16 H16 H 0 1 N N N 107.825 104.235 67.895 -3.165 -0.634 -0.077 H16 UBL 43 UBL H17 H17 H 0 1 N N N 109.396 105.107 67.913 -2.909 -1.447 -1.640 H17 UBL 44 UBL H18 H18 H 0 1 N N N 107.963 106.715 69.607 -3.631 -3.598 -0.640 H18 UBL 45 UBL H19 H19 H 0 1 N N N 107.136 105.149 69.909 -3.887 -2.785 0.923 H19 UBL 46 UBL H20 H20 H 0 1 N N N 109.748 104.324 69.983 -5.573 -1.300 -0.125 H20 UBL 47 UBL H21 H21 H 0 1 N N N 109.945 106.013 70.560 -5.317 -2.112 -1.688 H21 UBL 48 UBL H22 H22 H 0 1 N N N 107.767 104.382 71.716 -6.119 -4.335 -0.494 H22 UBL 49 UBL H24 H24 H 0 1 N N N 108.206 104.181 73.866 -8.011 -3.761 0.855 H24 UBL 50 UBL H26 H26 H 0 1 N N N 111.034 104.183 73.670 -7.614 -1.320 1.779 H26 UBL 51 UBL H27 H27 H 0 1 N N N 110.737 105.798 72.942 -7.002 -0.906 0.160 H27 UBL 52 UBL H28 H28 H 0 1 N N N 110.697 106.719 75.016 -9.209 -1.471 -0.819 H28 UBL 53 UBL H29 H29 H 0 1 N N N 109.288 105.689 75.442 -9.821 -1.885 0.801 H29 UBL 54 UBL H30 H30 H 0 1 N N N 110.621 104.689 76.981 -9.380 0.433 1.561 H30 UBL 55 UBL H31 H31 H 0 1 N N N 111.483 103.927 75.602 -8.768 0.848 -0.059 H31 UBL 56 UBL H32 H32 H 0 1 N N N 113.386 105.054 76.084 -10.976 0.283 -1.037 H32 UBL 57 UBL H33 H33 H 0 1 N N N 112.520 106.628 76.086 -11.587 -0.132 0.582 H33 UBL 58 UBL H34 H34 H 0 1 N N N 112.511 106.729 78.362 -11.146 2.187 1.342 H34 UBL 59 UBL H35 H35 H 0 1 N N N 111.919 105.039 78.508 -10.534 2.602 -0.277 H35 UBL 60 UBL H36 H36 H 0 1 N N N 114.199 104.162 78.394 -12.741 2.037 -1.255 H36 UBL 61 UBL H37 H37 H 0 1 N N N 114.858 105.789 78.013 -13.353 1.622 0.364 H37 UBL 62 UBL H38 H38 H 0 1 N N N 114.425 106.604 80.231 -12.912 3.941 1.124 H38 UBL 63 UBL H39 H39 H 0 1 N N N 113.347 105.220 80.616 -12.300 4.355 -0.496 H39 UBL 64 UBL H40 H40 H 0 1 N N N 115.549 104.991 81.767 -14.508 3.790 -1.474 H40 UBL 65 UBL H41 H41 H 0 1 N N N 115.312 103.675 80.567 -15.119 3.376 0.146 H41 UBL 66 UBL H42 H42 H 0 1 N N N 116.390 105.060 80.181 -14.664 5.055 -0.231 H42 UBL 67 UBL H43 H43 H 0 1 N N N 100.332 103.432 67.797 6.490 1.829 1.503 H43 UBL 68 UBL O1 O7 O 0 1 N N N 95.990 105.978 65.924 11.508 2.019 -0.788 O1 UBL 69 UBL H2 H2 H 0 1 N N N 95.525 105.190 66.179 12.467 1.934 -0.700 H2 UBL 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBL OAA PAC SING N N 1 UBL CAL CAK SING N N 2 UBL CAL CAM SING N N 3 UBL OAB PAC DOUB N N 4 UBL OAE CAK DOUB N N 5 UBL CAK OAJ SING N N 6 UBL PAC OAF SING N N 7 UBL CAM CAN SING N N 8 UBL OAJ CAI SING N N 9 UBL OAF CAG SING N N 10 UBL CAI CAH SING N N 11 UBL CAH CAG SING N N 12 UBL CAH OBC SING N N 13 UBL CAN CAO SING N N 14 UBL CAO CAP SING N N 15 UBL CAP CAQ SING N N 16 UBL CAQ CAR SING N N 17 UBL CAR CAS SING N N 18 UBL CAS CAT DOUB N Z 19 UBL CAT CAU SING N N 20 UBL CAU CAV SING N N 21 UBL CAV CAW SING N N 22 UBL CAW CAX SING N N 23 UBL CAX CAY SING N N 24 UBL CAY CAZ SING N N 25 UBL CAZ CBA SING N N 26 UBL CBA CBB SING N N 27 UBL OAA H1 SING N N 28 UBL CAG H3 SING N N 29 UBL CAG H4 SING N N 30 UBL CAH H5 SING N N 31 UBL CAI H6 SING N N 32 UBL CAI H7 SING N N 33 UBL CAL H8 SING N N 34 UBL CAL H9 SING N N 35 UBL CAM H10 SING N N 36 UBL CAM H11 SING N N 37 UBL CAN H12 SING N N 38 UBL CAN H13 SING N N 39 UBL CAO H14 SING N N 40 UBL CAO H15 SING N N 41 UBL CAP H16 SING N N 42 UBL CAP H17 SING N N 43 UBL CAQ H18 SING N N 44 UBL CAQ H19 SING N N 45 UBL CAR H20 SING N N 46 UBL CAR H21 SING N N 47 UBL CAS H22 SING N N 48 UBL CAT H24 SING N N 49 UBL CAU H26 SING N N 50 UBL CAU H27 SING N N 51 UBL CAV H28 SING N N 52 UBL CAV H29 SING N N 53 UBL CAW H30 SING N N 54 UBL CAW H31 SING N N 55 UBL CAX H32 SING N N 56 UBL CAX H33 SING N N 57 UBL CAY H34 SING N N 58 UBL CAY H35 SING N N 59 UBL CAZ H36 SING N N 60 UBL CAZ H37 SING N N 61 UBL CBA H38 SING N N 62 UBL CBA H39 SING N N 63 UBL CBB H40 SING N N 64 UBL CBB H41 SING N N 65 UBL CBB H42 SING N N 66 UBL OBC H43 SING N N 67 UBL PAC O1 SING N N 68 UBL O1 H2 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBL InChI InChI 1.06 "InChI=1S/C21H41O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-21(23)27-18-20(22)19-28-29(24,25)26/h9-10,20,22H,2-8,11-19H2,1H3,(H2,24,25,26)/b10-9-/t20-/m1/s1" UBL InChIKey InChI 1.06 WRGQSWVCFNIUNZ-GDCKJWNLSA-N UBL SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC\C=C/CCCCCCCC(=O)OC[C@@H](O)CO[P](O)(O)=O" UBL SMILES CACTVS 3.385 "CCCCCCCCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(O)=O" UBL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC/C=C\CCCCCCCC(=O)OC[C@H](COP(=O)(O)O)O" UBL SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id UBL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-2-oxidanyl-3-phosphonooxy-propyl] (~{Z})-octadec-9-enoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBL "Create component" 2023-05-25 PDBJ UBL "Initial release" 2023-11-01 RCSB #