data_UBO # _chem_comp.id UBO _chem_comp.name beta-D-rhamnopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 6-deoxy-beta-D-mannopyranose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-16 _chem_comp.pdbx_modified_date 2022-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DNC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBO O3 O1 O 0 1 N N N 152.475 142.592 94.713 -0.841 2.458 0.073 O10 UBO 1 UBO C5 C1 C 0 1 N N R 153.109 143.522 98.266 -0.747 -1.291 0.261 C13 UBO 2 UBO C1 C2 C 0 1 N N R 151.442 141.905 98.188 1.474 -0.452 0.600 C15 UBO 3 UBO C3 C3 C 0 1 N N S 152.635 142.410 96.087 -0.423 1.169 0.525 C11 UBO 4 UBO C4 C4 C 0 1 N N S 153.107 143.708 96.739 -1.254 0.087 -0.170 C12 UBO 5 UBO C2 C5 C 0 1 N N S 151.298 142.014 96.688 1.056 0.961 0.183 C16 UBO 6 UBO C6 C6 C 0 1 N N N 153.510 144.825 98.927 -1.533 -2.378 -0.476 C29 UBO 7 UBO O5 O2 O 0 1 N N N 151.830 143.149 98.701 0.641 -1.408 -0.059 O14 UBO 8 UBO O2 O3 O 0 1 N N N 150.350 143.009 96.395 1.247 1.119 -1.224 O17 UBO 9 UBO O4 O4 O 0 1 N N N 154.393 144.007 96.304 -2.627 0.228 0.200 O30 UBO 10 UBO O1 O5 O 0 1 N Y N 150.205 141.496 98.708 2.837 -0.673 0.233 O1 UBO 11 UBO HO3 H1 H 0 1 N N N 153.307 142.840 94.327 -0.351 3.192 0.468 H1 UBO 12 UBO H4 H2 H 0 1 N N N 153.846 142.748 98.525 -0.884 -1.410 1.336 H2 UBO 13 UBO H1 H3 H 0 1 N N N 152.211 141.150 98.410 1.366 -0.559 1.680 H3 UBO 14 UBO H3 H4 H 0 1 N N N 153.370 141.618 96.294 -0.560 1.099 1.604 H4 UBO 15 UBO H6 H5 H 0 1 N N N 152.406 144.515 96.480 -1.155 0.190 -1.251 H5 UBO 16 UBO H2 H6 H 0 1 N N N 150.988 141.042 96.278 1.660 1.693 0.718 H6 UBO 17 UBO H61 H7 H 0 1 N N N 153.513 144.697 100.020 -1.171 -3.359 -0.170 H7 UBO 18 UBO H62 H8 H 0 1 N N N 154.516 145.113 98.589 -2.591 -2.289 -0.233 H8 UBO 19 UBO H63 H9 H 0 1 N N N 152.792 145.612 98.652 -1.396 -2.259 -1.551 H9 UBO 20 UBO HO2 H10 H 0 1 N N N 149.511 142.767 96.769 2.162 1.000 -1.513 H10 UBO 21 UBO HO4 H11 H 0 1 N N N 154.685 144.814 96.710 -3.213 -0.426 -0.205 H11 UBO 22 UBO HO1 H12 H 0 1 N N N 150.268 141.419 99.653 3.170 -1.551 0.467 H12 UBO 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBO O3 C3 SING N N 1 UBO C3 C2 SING N N 2 UBO C3 C4 SING N N 3 UBO O4 C4 SING N N 4 UBO O2 C2 SING N N 5 UBO C2 C1 SING N N 6 UBO C4 C5 SING N N 7 UBO C1 O5 SING N N 8 UBO C5 O5 SING N N 9 UBO C5 C6 SING N N 10 UBO C1 O1 SING N N 11 UBO O3 HO3 SING N N 12 UBO C5 H4 SING N N 13 UBO C1 H1 SING N N 14 UBO C3 H3 SING N N 15 UBO C4 H6 SING N N 16 UBO C2 H2 SING N N 17 UBO C6 H61 SING N N 18 UBO C6 H62 SING N N 19 UBO C6 H63 SING N N 20 UBO O2 HO2 SING N N 21 UBO O4 HO4 SING N N 22 UBO O1 HO1 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBO SMILES ACDLabs 12.01 "OC1C(O)C(C)OC(O)C1O" UBO InChI InChI 1.06 "InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6-/m1/s1" UBO InChIKey InChI 1.06 SHZGCJCMOBCMKK-RWOPYEJCSA-N UBO SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O" UBO SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" UBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O" UBO SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UBO "SYSTEMATIC NAME" ACDLabs 12.01 6-deoxy-beta-D-mannopyranose UBO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{S},5~{S},6~{R})-6-methyloxane-2,3,4,5-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBO "Create component" 2022-08-16 RCSB UBO "Modify atom id" 2022-08-17 RCSB UBO "Initial release" 2022-09-21 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UBO _pdbx_chem_comp_synonyms.name 6-deoxy-beta-D-mannopyranose _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support UBO "CARBOHYDRATE ANOMER" beta PDB ? UBO "CARBOHYDRATE ISOMER" D PDB ? UBO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? UBO "CARBOHYDRATE RING" pyranose PDB ? #