data_UBX # _chem_comp.id UBX _chem_comp.name "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-methyl-L-leucinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-08-03 _chem_comp.pdbx_modified_date 2012-07-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3T8D _chem_comp.pdbx_subcomponent_list "PHQ PGL LNM" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBX C3 C3 C 0 1 Y N N 15.138 -40.768 12.635 -6.582 0.317 0.705 C1 PHQ 1 UBX C2 C2 C 0 1 Y N N 16.376 -40.329 13.100 -7.790 0.577 0.085 C2 PHQ 2 UBX C1 C1 C 0 1 Y N N 17.511 -40.476 12.310 -8.006 0.154 -1.213 C3 PHQ 3 UBX C6 C6 C 0 1 Y N N 17.414 -41.058 11.052 -7.014 -0.530 -1.891 C4 PHQ 4 UBX C5 C5 C 0 1 Y N N 16.181 -41.498 10.585 -5.806 -0.790 -1.271 C5 PHQ 5 UBX C4 C4 C 0 1 Y N N 15.041 -41.348 11.375 -5.588 -0.361 0.025 C6 PHQ 6 UBX C7 C7 C 0 1 N N N 13.708 -41.832 10.855 -4.272 -0.645 0.701 C7 PHQ 7 UBX O8 O8 O 0 1 N N N 13.034 -40.755 10.198 -3.350 0.447 0.443 O12 PHQ 8 UBX C9 C9 C 0 1 N N N 12.440 -40.979 8.895 -2.119 0.348 0.980 C14 PHQ 9 UBX O19 O19 O 0 1 N N N 11.861 -42.027 8.708 -1.824 -0.624 1.647 O15 PHQ 10 UBX N10 N10 N 0 1 N N N 12.518 -40.058 7.944 -1.215 1.327 0.779 N PGL 11 UBX C11 C11 C 0 1 N N N 11.948 -40.202 6.618 0.123 1.219 1.364 C PGL 12 UBX P12 P12 P 0 1 N N N 11.476 -38.590 5.979 1.268 0.507 0.136 P PGL 13 UBX O21 O21 O 0 1 N N N 12.602 -37.621 6.209 1.319 1.383 -1.056 O1 PGL 14 UBX O20 O20 O 0 1 N N N 10.142 -38.104 6.531 0.751 -0.956 -0.294 O2 PGL 15 UBX N13 N13 N 0 1 N N N 11.257 -38.898 4.345 2.806 0.384 0.808 N13 LNM 16 UBX C14 C14 C 0 1 N N S 10.064 -38.444 3.631 3.756 -0.188 -0.155 C14 LNM 17 UBX C15 C15 C 0 1 N N N 8.877 -39.333 3.897 3.864 -1.674 0.066 C15 LNM 18 UBX N16 N16 N 0 1 N N N 9.097 -40.642 4.014 4.684 -2.414 -0.707 N16 LNM 19 UBX C17 C17 C 0 1 N N N 8.044 -41.629 4.250 4.788 -3.859 -0.491 C17 LNM 20 UBX C22 C22 C 0 1 N N N 10.412 -38.547 2.147 5.130 0.458 0.040 C22 LNM 21 UBX O23 O23 O 0 1 N N N 7.760 -38.835 3.985 3.212 -2.206 0.941 O23 LNM 22 UBX C27 C27 C 0 1 N N N 9.291 -38.018 1.244 5.048 1.946 -0.306 C27 LNM 23 UBX C28 C28 C 0 1 N N N 9.527 -38.439 -0.204 6.387 2.616 0.008 C28 LNM 24 UBX C29 C29 C 0 1 N N N 9.140 -36.502 1.331 4.734 2.107 -1.794 C29 LNM 25 UBX H3 H3 H 0 1 N N N 14.257 -40.658 13.251 -6.414 0.647 1.719 H1 PHQ 26 UBX H2 H2 H 0 1 N N N 16.454 -39.874 14.076 -8.565 1.111 0.615 H2 PHQ 27 UBX H1 H1 H 0 1 N N N 18.469 -40.137 12.675 -8.950 0.357 -1.697 H3 PHQ 28 UBX H6 H6 H 0 1 N N N 18.296 -41.168 10.438 -7.183 -0.861 -2.905 H4 PHQ 29 UBX H5 H5 H 0 1 N N N 16.105 -41.956 9.610 -5.030 -1.320 -1.802 H5 PHQ 30 UBX H7 H7 H 0 1 N N N 13.869 -42.654 10.142 -4.428 -0.742 1.776 H71 PHQ 31 UBX H7A H7A H 0 1 N N N 13.095 -42.191 11.695 -3.855 -1.573 0.310 H72 PHQ 32 UBX HN10 HN10 H 0 0 N N N 13.002 -39.208 8.155 -1.451 2.103 0.247 HN1 PGL 33 UBX H11 H11 H 0 1 N N N 12.693 -40.656 5.948 0.473 2.210 1.655 H1 PGL 34 UBX H11A H11A H 0 0 N N N 11.059 -40.847 6.672 0.086 0.575 2.242 H2 PGL 35 UBX HO20 HO20 H 0 0 N N N 10.257 -37.252 6.935 0.692 -1.583 0.439 HO2 PGL 36 UBX HN13 HN13 H 0 0 N N N 12.029 -38.461 3.883 3.126 1.279 1.145 HN13 LNM 37 UBX H14 H14 H 0 1 N N N 9.795 -37.427 3.953 3.406 0.004 -1.169 H14 LNM 38 UBX H17 H17 H 0 1 N N N 8.488 -42.634 4.306 5.138 -4.051 0.523 H17 LNM 39 UBX H17A H17A H 0 0 N N N 7.533 -41.401 5.197 3.809 -4.319 -0.631 H17A LNM 40 UBX H22 H22 H 0 1 N N N 11.320 -37.954 1.960 5.441 0.342 1.079 H22 LNM 41 UBX H22A H22A H 0 0 N N N 10.587 -39.605 1.902 5.856 -0.028 -0.612 H22A LNM 42 UBX H27 H27 H 0 1 N N N 8.352 -38.463 1.605 4.260 2.413 0.285 H27 LNM 43 UBX H28 H28 H 0 1 N N N 8.715 -38.051 -0.836 7.175 2.149 -0.582 H28 LNM 44 UBX H28A H28A H 0 0 N N N 10.488 -38.032 -0.552 6.329 3.677 -0.238 H28A LNM 45 UBX H28B H28B H 0 0 N N N 9.549 -39.537 -0.268 6.611 2.502 1.069 H28B LNM 46 UBX H29 H29 H 0 1 N N N 8.326 -36.175 0.667 5.521 1.639 -2.385 H29 LNM 47 UBX H29A H29A H 0 0 N N N 8.905 -36.216 2.367 3.780 1.629 -2.018 H29A LNM 48 UBX H29B H29B H 0 0 N N N 10.080 -36.022 1.022 4.675 3.167 -2.041 H29B LNM 49 UBX H25 H25 H 0 1 N N N 10.039 -40.969 3.936 5.205 -1.988 -1.406 H25 LNM 50 UBX H26 H26 H 0 1 N N N 7.318 -41.595 3.424 5.493 -4.283 -1.206 H26 LNM 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBX C1 C2 SING Y N 1 UBX C1 H1 SING N N 2 UBX C2 H2 SING N N 3 UBX C3 C2 DOUB Y N 4 UBX C3 H3 SING N N 5 UBX C4 C3 SING Y N 6 UBX C5 C4 DOUB Y N 7 UBX C5 C6 SING Y N 8 UBX C5 H5 SING N N 9 UBX C6 C1 DOUB Y N 10 UBX C6 H6 SING N N 11 UBX C7 C4 SING N N 12 UBX C7 H7 SING N N 13 UBX C7 H7A SING N N 14 UBX O8 C7 SING N N 15 UBX C9 O8 SING N N 16 UBX N10 C9 SING N N 17 UBX N10 HN10 SING N N 18 UBX C11 N10 SING N N 19 UBX C11 H11 SING N N 20 UBX C11 H11A SING N N 21 UBX P12 C11 SING N N 22 UBX P12 O21 DOUB N N 23 UBX P12 O20 SING N N 24 UBX N13 P12 SING N N 25 UBX N13 HN13 SING N N 26 UBX C14 N13 SING N N 27 UBX C14 C15 SING N N 28 UBX C14 H14 SING N N 29 UBX C15 O23 DOUB N N 30 UBX C15 N16 SING N N 31 UBX N16 C17 SING N N 32 UBX C17 H17 SING N N 33 UBX C17 H17A SING N N 34 UBX O19 C9 DOUB N N 35 UBX O20 HO20 SING N N 36 UBX C22 C14 SING N N 37 UBX C22 H22 SING N N 38 UBX C22 H22A SING N N 39 UBX C27 C22 SING N N 40 UBX C27 C29 SING N N 41 UBX C27 H27 SING N N 42 UBX C28 C27 SING N N 43 UBX C28 H28 SING N N 44 UBX C28 H28A SING N N 45 UBX C28 H28B SING N N 46 UBX C29 H29 SING N N 47 UBX C29 H29A SING N N 48 UBX C29 H29B SING N N 49 UBX N16 H25 SING N N 50 UBX C17 H26 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBX SMILES ACDLabs 12.01 "O=C(NC)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C" UBX InChI InChI 1.03 "InChI=1S/C16H26N3O5P/c1-12(2)9-14(15(20)17-3)19-25(22,23)11-18-16(21)24-10-13-7-5-4-6-8-13/h4-8,12,14H,9-11H2,1-3H3,(H,17,20)(H,18,21)(H2,19,22,23)/t14-/m0/s1" UBX InChIKey InChI 1.03 VZBGTFZRCJNJEQ-AWEZNQCLSA-N UBX SMILES_CANONICAL CACTVS 3.370 "CNC(=O)[C@H](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1" UBX SMILES CACTVS 3.370 "CNC(=O)[CH](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1" UBX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(C)C[C@@H](C(=O)NC)NP(=O)(CNC(=O)OCc1ccccc1)O" UBX SMILES "OpenEye OEToolkits" 1.7.2 "CC(C)CC(C(=O)NC)NP(=O)(CNC(=O)OCc1ccccc1)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UBX "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-methyl-L-leucinamide" UBX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[(2S)-4-methyl-1-(methylamino)-1-oxidanylidene-pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBX "Create component" 2011-08-03 RCSB #