data_UBY # _chem_comp.id UBY _chem_comp.name "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucyl-L-alanine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H28 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-08-03 _chem_comp.pdbx_modified_date 2012-07-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3T74 _chem_comp.pdbx_subcomponent_list "PHQ PGL LEU ALA" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBY C3 C3 C 0 1 Y N N 15.133 -40.707 12.650 -7.755 -0.739 0.332 C1 PHQ 1 UBY C2 C2 C 0 1 Y N N 16.363 -40.264 13.140 -8.982 -0.345 -0.168 C2 PHQ 2 UBY C1 C1 C 0 1 Y N N 17.520 -40.371 12.370 -9.106 0.005 -1.500 C3 PHQ 3 UBY C6 C6 C 0 1 Y N N 17.429 -40.952 11.099 -8.002 -0.039 -2.332 C4 PHQ 4 UBY C5 C5 C 0 1 Y N N 16.197 -41.387 10.602 -6.775 -0.433 -1.831 C5 PHQ 5 UBY C4 C4 C 0 1 Y N N 15.046 -41.256 11.378 -6.650 -0.777 -0.498 C6 PHQ 6 UBY C7 C7 C 0 1 N N N 13.720 -41.750 10.867 -5.313 -1.207 0.047 C7 PHQ 7 UBY O8 O8 O 0 1 N N N 12.969 -40.801 10.119 -4.591 -0.044 0.531 O12 PHQ 8 UBY C9 C9 C 0 1 N N N 12.981 -40.928 8.705 -3.369 -0.257 1.053 C14 PHQ 9 UBY O21 O21 O 0 1 N N N 13.744 -41.732 8.162 -2.918 -1.384 1.104 O15 PHQ 10 UBY N10 N10 N 0 1 N N N 12.170 -40.120 8.080 -2.645 0.780 1.520 N PGL 11 UBY C11 C11 C 0 1 N N N 12.039 -40.137 6.646 -1.315 0.549 2.089 C PGL 12 UBY P12 P12 P 0 1 N N N 11.537 -38.538 5.972 -0.051 0.809 0.803 P PGL 13 UBY O22 O22 O 0 1 N N N 12.618 -37.559 6.228 -0.137 2.199 0.300 O1 PGL 14 UBY O23 O23 O 0 1 N N N 10.193 -38.104 6.540 -0.301 -0.217 -0.412 O2 PGL 15 UBY N13 N13 N 0 1 N N N 11.335 -38.866 4.361 1.477 0.543 1.456 N LEU 16 UBY C14 C14 C 0 1 N N S 10.154 -38.419 3.632 2.516 0.632 0.420 CA LEU 17 UBY C15 C15 C 0 1 N N N 8.954 -39.292 3.857 3.609 -0.361 0.719 C LEU 18 UBY O24 O24 O 0 1 N N N 7.813 -38.805 3.898 3.667 -0.890 1.809 O LEU 19 UBY C20 C20 C 0 1 N N N 10.501 -38.460 2.138 3.101 2.045 0.405 CB LEU 20 UBY C21 C21 C 0 1 N N N 9.402 -37.935 1.225 4.078 2.179 -0.765 CG LEU 21 UBY C22 C22 C 0 1 N N N 9.642 -38.337 -0.224 3.310 2.090 -2.085 CD1 LEU 22 UBY C23 C23 C 0 1 N N N 9.215 -36.427 1.372 4.792 3.530 -0.681 CD2 LEU 23 UBY N16 N16 N 0 1 N N N 9.179 -40.605 3.952 4.522 -0.663 -0.226 N ALA 24 UBY C17 C17 C 0 1 N N S 8.121 -41.611 4.078 5.519 -1.707 0.026 CA ALA 25 UBY C18 C18 C 0 1 N N N 8.288 -42.468 5.302 6.735 -1.456 -0.828 C ALA 26 UBY O32 O32 O 0 1 N N N 7.272 -43.079 5.706 6.766 -0.503 -1.571 O ALA 27 UBY C25 C25 C 0 1 N N N 8.152 -42.499 2.829 4.925 -3.073 -0.321 CB ALA 28 UBY O19 O19 O 0 1 N N N 9.415 -42.555 5.836 7.784 -2.291 -0.764 OXT ALA 29 UBY H3 H3 H 0 1 N N N 14.247 -40.622 13.262 -7.659 -1.012 1.372 H1 PHQ 30 UBY H2 H2 H 0 1 N N N 16.419 -39.833 14.129 -9.844 -0.310 0.481 H2 PHQ 31 UBY H1 H1 H 0 1 N N N 18.467 -40.013 12.746 -10.064 0.313 -1.891 H3 PHQ 32 UBY H6 H6 H 0 1 N N N 18.319 -41.065 10.497 -8.099 0.234 -3.372 H4 PHQ 33 UBY H5 H5 H 0 1 N N N 16.137 -41.825 9.617 -5.912 -0.463 -2.480 H5 PHQ 34 UBY H7 H7 H 0 1 N N N 13.916 -42.611 10.211 -5.464 -1.908 0.868 H71 PHQ 35 UBY H7A H7A H 0 1 N N N 13.115 -42.041 11.738 -4.737 -1.690 -0.742 H72 PHQ 36 UBY HN10 HN10 H 0 0 N N N 11.625 -39.471 8.611 -3.006 1.680 1.480 HN1 PGL 37 UBY H11 H11 H 0 1 N N N 13.013 -40.407 6.212 -1.146 1.244 2.911 H1 PGL 38 UBY H11A H11A H 0 0 N N N 11.277 -40.882 6.376 -1.252 -0.474 2.459 H2 PGL 39 UBY HO23 HO23 H 0 0 N N N 10.287 -37.261 6.969 -0.259 -1.148 -0.155 HO2 PGL 40 UBY HN13 HN13 H 0 0 N N N 12.113 -38.439 3.900 1.665 1.186 2.211 H LEU 41 UBY H14 H14 H 0 1 N N N 9.893 -37.412 3.989 2.078 0.409 -0.553 HA LEU 42 UBY H20 H20 H 0 1 N N N 11.396 -37.839 1.982 2.296 2.771 0.290 HB2 LEU 43 UBY H20A H20A H 0 0 N N N 10.696 -39.508 1.865 3.627 2.231 1.341 HB3 LEU 44 UBY H21 H21 H 0 1 N N N 8.460 -38.406 1.543 4.814 1.376 -0.718 HG LEU 45 UBY H22 H22 H 0 1 N N N 8.831 -37.942 -0.854 4.014 2.111 -2.917 HD11 LEU 46 UBY H22A H22A H 0 0 N N N 10.604 -37.925 -0.564 2.742 1.160 -2.112 HD12 LEU 47 UBY H22B H22B H 0 0 N N N 9.665 -39.434 -0.301 2.626 2.935 -2.165 HD13 LEU 48 UBY H23 H23 H 0 1 N N N 8.415 -36.089 0.698 5.340 3.594 0.260 HD21 LEU 49 UBY H23A H23A H 0 0 N N N 8.943 -36.191 2.411 5.489 3.626 -1.514 HD22 LEU 50 UBY H23B H23B H 0 0 N N N 10.153 -35.914 1.113 4.057 4.333 -0.728 HD23 LEU 51 UBY HN16 HN16 H 0 0 N N N 10.128 -40.921 3.936 4.519 -0.189 -1.072 H ALA 52 UBY H17 H17 H 0 1 N N N 7.158 -41.089 4.176 5.804 -1.691 1.078 HA ALA 53 UBY H25 H25 H 0 1 N N N 7.364 -43.263 2.902 5.666 -3.850 -0.134 HB1 ALA 54 UBY H25A H25A H 0 0 N N N 7.981 -41.881 1.935 4.045 -3.254 0.297 HB2 ALA 55 UBY H25B H25B H 0 0 N N N 9.133 -42.990 2.753 4.640 -3.089 -1.373 HB3 ALA 56 UBY HO19 HO19 H 0 0 N N N 9.369 -43.146 6.578 8.541 -2.089 -1.331 HXT ALA 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBY C6 C1 DOUB Y N 1 UBY C1 C2 SING Y N 2 UBY C1 H1 SING N N 3 UBY C3 C2 DOUB Y N 4 UBY C2 H2 SING N N 5 UBY C4 C3 SING Y N 6 UBY C3 H3 SING N N 7 UBY C5 C4 DOUB Y N 8 UBY C7 C4 SING N N 9 UBY C5 C6 SING Y N 10 UBY C5 H5 SING N N 11 UBY C6 H6 SING N N 12 UBY O8 C7 SING N N 13 UBY C7 H7 SING N N 14 UBY C7 H7A SING N N 15 UBY C9 O8 SING N N 16 UBY N10 C9 SING N N 17 UBY O21 C9 DOUB N N 18 UBY C11 N10 SING N N 19 UBY N10 HN10 SING N N 20 UBY P12 C11 SING N N 21 UBY C11 H11 SING N N 22 UBY C11 H11A SING N N 23 UBY N13 P12 SING N N 24 UBY P12 O22 DOUB N N 25 UBY P12 O23 SING N N 26 UBY C14 N13 SING N N 27 UBY N13 HN13 SING N N 28 UBY C20 C14 SING N N 29 UBY C14 C15 SING N N 30 UBY C14 H14 SING N N 31 UBY C15 O24 DOUB N N 32 UBY C15 N16 SING N N 33 UBY N16 C17 SING N N 34 UBY N16 HN16 SING N N 35 UBY C25 C17 SING N N 36 UBY C17 C18 SING N N 37 UBY C17 H17 SING N N 38 UBY C18 O32 DOUB N N 39 UBY C18 O19 SING N N 40 UBY O19 HO19 SING N N 41 UBY C21 C20 SING N N 42 UBY C20 H20 SING N N 43 UBY C20 H20A SING N N 44 UBY C22 C21 SING N N 45 UBY C21 C23 SING N N 46 UBY C21 H21 SING N N 47 UBY C22 H22 SING N N 48 UBY C22 H22A SING N N 49 UBY C22 H22B SING N N 50 UBY C23 H23 SING N N 51 UBY C23 H23A SING N N 52 UBY C23 H23B SING N N 53 UBY O23 HO23 SING N N 54 UBY C25 H25 SING N N 55 UBY C25 H25A SING N N 56 UBY C25 H25B SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBY SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C)C" UBY InChI InChI 1.03 "InChI=1S/C18H28N3O7P/c1-12(2)9-15(16(22)20-13(3)17(23)24)21-29(26,27)11-19-18(25)28-10-14-7-5-4-6-8-14/h4-8,12-13,15H,9-11H2,1-3H3,(H,19,25)(H,20,22)(H,23,24)(H2,21,26,27)/t13-,15-/m0/s1" UBY InChIKey InChI 1.03 DVNAMUNBHDIPLR-ZFWWWQNUSA-N UBY SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)N[C@@H](C)C(O)=O" UBY SMILES CACTVS 3.370 "CC(C)C[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)N[CH](C)C(O)=O" UBY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@@H](C(=O)O)NC(=O)[C@H](CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" UBY SMILES "OpenEye OEToolkits" 1.7.2 "CC(C)CC(C(=O)NC(C)C(=O)O)NP(=O)(CNC(=O)OCc1ccccc1)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UBY "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-L-leucyl-L-alanine" UBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-2-[[(2S)-4-methyl-2-[[oxidanyl(phenylmethoxycarbonylaminomethyl)phosphoryl]amino]pentanoyl]amino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBY "Create component" 2011-08-03 RCSB #