data_UC5 # _chem_comp.id UC5 _chem_comp.name "2'-DEOXY-5'-O-[(S)-HYDROXY(PHOSPHONOMETHYL)PHOSPHORYL]URIDINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N2 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-07-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.189 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UC5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UC5 O4 O4 O 0 1 N N N 26.501 20.997 2.495 6.469 -2.974 -0.278 O4 UC5 1 UC5 C4 C4 C 0 1 N N N 25.610 21.482 3.211 5.697 -2.065 -0.034 C4 UC5 2 UC5 C5 C5 C 0 1 N N N 25.748 22.739 3.828 5.843 -1.301 1.149 C5 UC5 3 UC5 C6 C6 C 0 1 N N N 24.713 23.236 4.631 4.972 -0.299 1.395 C6 UC5 4 UC5 N3 N3 N 0 1 N N N 24.448 20.779 3.400 4.695 -1.777 -0.889 N3 UC5 5 UC5 C2 C2 C 0 1 N N N 23.404 21.241 4.232 3.838 -0.775 -0.616 C2 UC5 6 UC5 O2 O2 O 0 1 N N N 22.383 20.529 4.421 2.939 -0.526 -1.396 O2 UC5 7 UC5 N1 N1 N 0 1 N N N 23.537 22.481 4.821 3.968 -0.038 0.502 N1 UC5 8 UC5 "C1'" C1* C 0 1 N N R 22.528 23.063 5.726 3.024 1.049 0.769 "C1'" UC5 9 UC5 "C2'" C2* C 0 1 N N N 23.143 23.182 7.145 3.169 2.161 -0.293 "C2'" UC5 10 UC5 "C3'" C3* C 0 1 N N S 23.299 24.654 7.408 1.722 2.647 -0.528 "C3'" UC5 11 UC5 "O3'" O3* O 0 1 N N N 23.165 25.072 8.773 1.595 4.028 -0.182 "O3'" UC5 12 UC5 "O4'" O4* O 0 1 N N N 22.158 24.396 5.342 1.664 0.582 0.631 "O4'" UC5 13 UC5 "C4'" C4* C 0 1 N N R 22.297 25.271 6.452 0.870 1.772 0.418 "C4'" UC5 14 UC5 "C5'" C5* C 0 1 N N N 22.857 26.635 6.023 -0.465 1.411 -0.237 "C5'" UC5 15 UC5 "O5'" O5* O 0 1 N N N 21.923 27.255 5.222 -1.250 0.639 0.674 "O5'" UC5 16 UC5 PA PA P 0 1 N N S 22.245 28.783 4.782 -2.632 0.297 -0.076 PA UC5 17 UC5 O1A O1A O 0 1 N N N 20.897 29.313 4.343 -3.267 1.551 -0.537 O1A UC5 18 UC5 O2A O2A O 0 1 N N N 22.939 29.570 5.876 -2.335 -0.652 -1.343 O2A UC5 19 UC5 C3A C3A C 0 1 N N N 23.427 28.537 3.420 -3.752 -0.563 1.077 C3A UC5 20 UC5 PB PB P 0 1 N N N 23.715 29.896 2.274 -5.318 -0.951 0.227 PB UC5 21 UC5 O1B O1B O 0 1 N N N 23.889 31.155 3.093 -5.021 -1.899 -1.040 O1B UC5 22 UC5 O2B O2B O 0 1 N N N 24.910 29.755 1.431 -6.307 -1.710 1.245 O2B UC5 23 UC5 O3B O3B O 0 1 N N N 22.481 30.034 1.242 -5.953 0.304 -0.234 O3B UC5 24 UC5 H5 H5 H 0 1 N N N 26.648 23.318 3.683 6.639 -1.517 1.845 H5 UC5 25 UC5 H6 H6 H 0 1 N N N 24.816 24.200 5.106 5.068 0.295 2.292 H6 UC5 26 UC5 HN3 HN3 H 0 1 N N N 24.335 19.904 2.930 4.588 -2.295 -1.702 HN3 UC5 27 UC5 "H1'" H1* H 0 1 N N N 21.645 22.408 5.690 3.186 1.455 1.768 "H1'" UC5 28 UC5 "H2'1" 1H2* H 0 0 N N N 24.109 22.659 7.209 3.591 1.757 -1.213 "H2'1" UC5 29 UC5 "H2'2" 2H2* H 0 0 N N N 22.481 22.722 7.894 3.788 2.974 0.087 "H2'2" UC5 30 UC5 "H3'" H3* H 0 1 N N N 24.331 24.991 7.232 1.428 2.486 -1.565 "H3'" UC5 31 UC5 "HO3'" HO3* H 0 0 N N N 23.135 24.308 9.337 2.169 4.521 -0.784 "HO3'" UC5 32 UC5 "H4'" H4* H 0 1 N N N 21.308 25.415 6.911 0.701 2.289 1.362 "H4'" UC5 33 UC5 "H5'1" 1H5* H 0 0 N N N 23.799 26.500 5.471 -1.002 2.324 -0.495 "H5'1" UC5 34 UC5 "H5'2" 2H5* H 0 0 N N N 23.056 27.253 6.911 -0.281 0.830 -1.141 "H5'2" UC5 35 UC5 HO2A HO2A H 0 0 N N N 23.084 29.008 6.628 -1.922 -1.456 -0.999 HO2A UC5 36 UC5 H3A1 1H3A H 0 0 N N N 22.973 27.749 2.802 -3.285 -1.487 1.416 H3A1 UC5 37 UC5 H3A2 2H3A H 0 0 N N N 24.397 28.308 3.885 -3.954 0.079 1.934 H3A2 UC5 38 UC5 HO1B HO1B H 0 0 N N N 23.925 30.931 4.015 -4.608 -2.703 -0.696 HO1B UC5 39 UC5 HO2B HO2B H 0 0 N N N 24.652 29.725 0.517 -7.121 -1.897 0.757 HO2B UC5 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UC5 O4 C4 DOUB N N 1 UC5 C4 C5 SING N N 2 UC5 C4 N3 SING N N 3 UC5 C5 C6 DOUB N N 4 UC5 C5 H5 SING N N 5 UC5 C6 N1 SING N N 6 UC5 C6 H6 SING N N 7 UC5 N3 C2 SING N N 8 UC5 N3 HN3 SING N N 9 UC5 C2 O2 DOUB N N 10 UC5 C2 N1 SING N N 11 UC5 N1 "C1'" SING N N 12 UC5 "C1'" "C2'" SING N N 13 UC5 "C1'" "O4'" SING N N 14 UC5 "C1'" "H1'" SING N N 15 UC5 "C2'" "C3'" SING N N 16 UC5 "C2'" "H2'1" SING N N 17 UC5 "C2'" "H2'2" SING N N 18 UC5 "C3'" "O3'" SING N N 19 UC5 "C3'" "C4'" SING N N 20 UC5 "C3'" "H3'" SING N N 21 UC5 "O3'" "HO3'" SING N N 22 UC5 "O4'" "C4'" SING N N 23 UC5 "C4'" "C5'" SING N N 24 UC5 "C4'" "H4'" SING N N 25 UC5 "C5'" "O5'" SING N N 26 UC5 "C5'" "H5'1" SING N N 27 UC5 "C5'" "H5'2" SING N N 28 UC5 "O5'" PA SING N N 29 UC5 PA O1A DOUB N N 30 UC5 PA O2A SING N N 31 UC5 PA C3A SING N N 32 UC5 O2A HO2A SING N N 33 UC5 C3A PB SING N N 34 UC5 C3A H3A1 SING N N 35 UC5 C3A H3A2 SING N N 36 UC5 PB O1B SING N N 37 UC5 PB O2B SING N N 38 UC5 PB O3B DOUB N N 39 UC5 O1B HO1B SING N N 40 UC5 O2B HO2B SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UC5 SMILES ACDLabs 10.04 "O=P(O)(O)CP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)CC2O" UC5 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)C[P](O)(O)=O)N2C=CC(=O)NC2=O" UC5 SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)C[P](O)(O)=O)N2C=CC(=O)NC2=O" UC5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O)(CP(=O)(O)O)O)O" UC5 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(CP(=O)(O)O)O)O" UC5 InChI InChI 1.03 "InChI=1S/C10H16N2O10P2/c13-6-3-9(12-2-1-8(14)11-10(12)15)22-7(6)4-21-24(19,20)5-23(16,17)18/h1-2,6-7,9,13H,3-5H2,(H,19,20)(H,11,14,15)(H2,16,17,18)/t6-,7+,9+/m0/s1" UC5 InChIKey InChI 1.03 MYBNSHXDOWMNJH-LKEWCRSYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UC5 "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5'-O-[(S)-hydroxy(phosphonomethyl)phosphoryl]uridine" UC5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UC5 "Create component" 2006-07-26 RCSB UC5 "Modify descriptor" 2011-06-04 RCSB #