data_UCE # _chem_comp.id UCE _chem_comp.name "~{N}-[3-[1-[[4-[5-(hydroxymethyl)-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-10 _chem_comp.pdbx_modified_date 2021-09-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.673 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UCE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NH4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UCE C10 C1 C 0 1 Y N N 3.299 2.725 10.511 1.972 1.809 1.367 C10 UCE 1 UCE C13 C2 C 0 1 Y N N 3.042 1.186 14.070 5.373 1.086 -0.058 C13 UCE 2 UCE C15 C3 C 0 1 Y N N 1.419 -0.114 15.159 7.067 2.456 -0.823 C15 UCE 3 UCE C17 C4 C 0 1 N N N 1.912 -1.447 17.298 9.410 1.655 -1.215 C17 UCE 4 UCE C20 C5 C 0 1 Y N N 4.010 0.830 15.043 6.243 -0.015 -0.006 C20 UCE 5 UCE C21 C6 C 0 1 Y N N 5.479 1.317 15.046 5.755 -1.341 0.444 C21 UCE 6 UCE C22 C7 C 0 1 Y N N 6.003 1.842 16.228 6.014 -2.478 -0.320 C22 UCE 7 UCE C24 C8 C 0 1 Y N N 8.132 2.196 15.158 4.843 -3.817 1.284 C24 UCE 8 UCE C26 C9 C 0 1 Y N N 6.292 1.220 13.912 5.040 -1.456 1.635 C26 UCE 9 UCE C28 C10 C 0 1 Y N N 4.260 4.267 12.107 1.963 -0.409 0.452 C28 UCE 10 UCE C02 C11 C 0 1 N N N -0.597 6.287 5.960 -3.086 -1.763 -1.544 C02 UCE 11 UCE C04 C12 C 0 1 N N N 1.897 6.038 6.655 -3.152 0.739 -1.508 C04 UCE 12 UCE C05 C13 C 0 1 N N N 1.259 6.080 8.026 -1.682 0.632 -1.921 C05 UCE 13 UCE C06 C14 C 0 1 N N N 2.299 5.895 9.164 -0.872 0.049 -0.761 C06 UCE 14 UCE C08 C15 C 0 1 N N N 4.269 4.989 9.656 -0.133 0.463 1.507 C08 UCE 15 UCE C09 C16 C 0 1 Y N N 3.925 3.951 10.783 1.308 0.626 1.097 C09 UCE 16 UCE C11 C17 C 0 1 Y N N 3.007 1.828 11.557 3.291 1.964 0.994 C11 UCE 17 UCE C12 C18 C 0 1 Y N N 3.358 2.142 12.882 3.956 0.925 0.345 C12 UCE 18 UCE C16 C19 C 0 1 Y N N 2.328 -0.508 16.146 7.982 1.418 -0.798 C16 UCE 19 UCE C19 C20 C 0 1 Y N N 3.636 -0.023 16.083 7.575 0.160 -0.384 C19 UCE 20 UCE C23 C21 C 0 1 Y N N 7.322 2.286 16.289 5.557 -3.709 0.104 C23 UCE 21 UCE C25 C22 C 0 1 Y N N 7.616 1.666 13.973 4.589 -2.693 2.049 C25 UCE 22 UCE C27 C23 C 0 1 Y N N 3.970 3.374 13.144 3.282 -0.265 0.075 C27 UCE 23 UCE C29 C24 C 0 1 N N N 4.027 5.357 7.510 -2.404 0.996 0.860 C29 UCE 24 UCE C30 C25 C 0 1 N N N 3.283 6.431 6.801 -3.259 1.608 -0.252 C30 UCE 25 UCE C31 C26 C 0 1 Y N N 0.787 8.075 5.296 -4.881 -0.880 -0.580 C31 UCE 26 UCE C32 C27 C 0 1 Y N N 1.838 8.991 5.031 -5.881 -0.084 -0.042 C32 UCE 27 UCE C33 C28 C 0 1 Y N N 1.576 10.184 4.325 -6.987 -0.673 0.552 C33 UCE 28 UCE C35 C29 C 0 1 N N N 2.491 12.582 4.163 -8.315 1.302 0.512 C35 UCE 29 UCE C36 C30 C 0 1 N N N 3.663 13.536 3.838 -9.317 2.221 1.163 C36 UCE 30 UCE C37 C31 C 0 1 N N N 4.007 13.527 2.334 -9.493 3.474 0.303 C37 UCE 31 UCE C39 C32 C 0 1 Y N N 0.260 10.464 3.867 -7.093 -2.058 0.609 C39 UCE 32 UCE C40 C33 C 0 1 Y N N -0.788 9.559 4.128 -6.100 -2.854 0.075 C40 UCE 33 UCE C41 C34 C 0 1 Y N N -0.520 8.362 4.844 -4.996 -2.271 -0.529 C41 UCE 34 UCE N03 N1 N 0 1 N N N 0.757 6.772 6.008 -3.680 -0.598 -1.225 N03 UCE 35 UCE N07 N2 N 0 1 N N N 3.413 5.038 8.782 -1.006 0.916 0.416 N07 UCE 36 UCE N14 N3 N 0 1 Y N N 1.806 0.702 14.179 5.814 2.269 -0.462 N14 UCE 37 UCE N34 N4 N 0 1 N N N 2.672 11.132 4.040 -7.999 0.129 1.095 N34 UCE 38 UCE N42 N5 N 0 1 N N N -1.403 7.249 5.251 -3.854 -2.791 -1.138 N42 UCE 39 UCE O01 O1 O 0 1 N N N -0.981 5.269 6.424 -2.018 -1.871 -2.118 O01 UCE 40 UCE O18 O2 O 0 1 N N N 0.540 -1.735 17.181 10.181 2.043 -0.076 O18 UCE 41 UCE O38 O3 O 0 1 N N N 1.447 13.028 4.508 -7.793 1.618 -0.536 O38 UCE 42 UCE H1 H1 H 0 1 N N N 3.040 2.468 9.495 1.454 2.615 1.866 H1 UCE 43 UCE H2 H2 H 0 1 N N N 0.401 -0.472 15.191 7.385 3.436 -1.146 H2 UCE 44 UCE H3 H3 H 0 1 N N N 2.491 -2.380 17.240 9.822 0.738 -1.637 H3 UCE 45 UCE H4 H4 H 0 1 N N N 2.105 -0.955 18.263 9.443 2.447 -1.964 H4 UCE 46 UCE H5 H5 H 0 1 N N N 5.378 1.905 17.107 6.571 -2.395 -1.242 H5 UCE 47 UCE H6 H6 H 0 1 N N N 9.157 2.535 15.198 4.488 -4.783 1.611 H6 UCE 48 UCE H7 H7 H 0 1 N N N 5.900 0.804 12.996 4.841 -0.580 2.234 H7 UCE 49 UCE H8 H8 H 0 1 N N N 4.745 5.206 12.328 1.440 -1.330 0.244 H8 UCE 50 UCE H9 H9 H 0 1 N N N 1.866 4.996 6.305 -3.726 1.194 -2.316 H9 UCE 51 UCE H10 H10 H 0 1 N N N 0.762 7.053 8.155 -1.595 -0.020 -2.790 H10 UCE 52 UCE H11 H11 H 0 1 N N N 0.513 5.275 8.094 -1.301 1.623 -2.170 H11 UCE 53 UCE H12 H12 H 0 1 N N N 2.695 6.883 9.441 -1.245 -0.947 -0.523 H12 UCE 54 UCE H13 H13 H 0 1 N N N 1.793 5.447 10.032 0.178 -0.015 -1.047 H13 UCE 55 UCE H14 H14 H 0 1 N N N 5.226 4.704 9.195 -0.333 -0.587 1.720 H14 UCE 56 UCE H15 H15 H 0 1 N N N 4.364 5.985 10.112 -0.326 1.058 2.399 H15 UCE 57 UCE H16 H16 H 0 1 N N N 2.511 0.894 11.340 3.808 2.889 1.206 H16 UCE 58 UCE H17 H17 H 0 1 N N N 4.356 -0.307 16.836 8.271 -0.664 -0.356 H17 UCE 59 UCE H18 H18 H 0 1 N N N 7.715 2.698 17.207 5.757 -4.591 -0.488 H18 UCE 60 UCE H19 H19 H 0 1 N N N 8.244 1.600 13.097 4.035 -2.784 2.972 H19 UCE 61 UCE H20 H20 H 0 1 N N N 4.222 3.638 14.160 3.792 -1.074 -0.428 H20 UCE 62 UCE H21 H21 H 0 1 N N N 4.037 4.454 6.882 -2.467 1.620 1.751 H21 UCE 63 UCE H22 H22 H 0 1 N N N 5.060 5.693 7.686 -2.770 -0.004 1.091 H22 UCE 64 UCE H23 H23 H 0 1 N N N 3.726 6.590 5.807 -2.903 2.614 -0.474 H23 UCE 65 UCE H24 H24 H 0 1 N N N 3.341 7.363 7.382 -4.299 1.653 0.072 H24 UCE 66 UCE H25 H25 H 0 1 N N N 2.840 8.774 5.370 -5.799 0.992 -0.086 H25 UCE 67 UCE H26 H26 H 0 1 N N N 4.549 13.219 4.408 -10.274 1.707 1.257 H26 UCE 68 UCE H27 H27 H 0 1 N N N 3.383 14.558 4.133 -8.959 2.507 2.152 H27 UCE 69 UCE H28 H28 H 0 1 N N N 4.843 14.216 2.144 -8.536 3.988 0.209 H28 UCE 70 UCE H29 H29 H 0 1 N N N 4.294 12.510 2.030 -9.851 3.189 -0.686 H29 UCE 71 UCE H30 H30 H 0 1 N N N 3.129 13.848 1.755 -10.218 4.139 0.774 H30 UCE 72 UCE H31 H31 H 0 1 N N N 0.063 11.373 3.318 -7.953 -2.513 1.079 H31 UCE 73 UCE H32 H32 H 0 1 N N N -1.789 9.774 3.786 -6.186 -3.929 0.122 H32 UCE 74 UCE H34 H34 H 0 1 N N N 3.562 10.775 3.755 -8.472 -0.160 1.891 H34 UCE 75 UCE H35 H35 H 0 1 N N N -2.383 7.176 5.068 -3.650 -3.732 -1.252 H35 UCE 76 UCE H36 H36 H 0 1 N N N 0.276 -2.313 17.887 11.113 2.212 -0.271 H36 UCE 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UCE C37 C36 SING N N 1 UCE C36 C35 SING N N 2 UCE C39 C40 DOUB Y N 3 UCE C39 C33 SING Y N 4 UCE N34 C35 SING N N 5 UCE N34 C33 SING N N 6 UCE C40 C41 SING Y N 7 UCE C35 O38 DOUB N N 8 UCE C33 C32 DOUB Y N 9 UCE C41 N42 SING N N 10 UCE C41 C31 DOUB Y N 11 UCE C32 C31 SING Y N 12 UCE N42 C02 SING N N 13 UCE C31 N03 SING N N 14 UCE C02 N03 SING N N 15 UCE C02 O01 DOUB N N 16 UCE N03 C04 SING N N 17 UCE C04 C30 SING N N 18 UCE C04 C05 SING N N 19 UCE C30 C29 SING N N 20 UCE C29 N07 SING N N 21 UCE C05 C06 SING N N 22 UCE N07 C06 SING N N 23 UCE N07 C08 SING N N 24 UCE C08 C09 SING N N 25 UCE C10 C09 DOUB Y N 26 UCE C10 C11 SING Y N 27 UCE C09 C28 SING Y N 28 UCE C11 C12 DOUB Y N 29 UCE C28 C27 DOUB Y N 30 UCE C12 C27 SING Y N 31 UCE C12 C13 SING N N 32 UCE C26 C25 DOUB Y N 33 UCE C26 C21 SING Y N 34 UCE C25 C24 SING Y N 35 UCE C13 N14 DOUB Y N 36 UCE C13 C20 SING Y N 37 UCE N14 C15 SING Y N 38 UCE C20 C21 SING N N 39 UCE C20 C19 DOUB Y N 40 UCE C21 C22 DOUB Y N 41 UCE C24 C23 DOUB Y N 42 UCE C15 C16 DOUB Y N 43 UCE C19 C16 SING Y N 44 UCE C16 C17 SING N N 45 UCE C22 C23 SING Y N 46 UCE O18 C17 SING N N 47 UCE C10 H1 SING N N 48 UCE C15 H2 SING N N 49 UCE C17 H3 SING N N 50 UCE C17 H4 SING N N 51 UCE C22 H5 SING N N 52 UCE C24 H6 SING N N 53 UCE C26 H7 SING N N 54 UCE C28 H8 SING N N 55 UCE C04 H9 SING N N 56 UCE C05 H10 SING N N 57 UCE C05 H11 SING N N 58 UCE C06 H12 SING N N 59 UCE C06 H13 SING N N 60 UCE C08 H14 SING N N 61 UCE C08 H15 SING N N 62 UCE C11 H16 SING N N 63 UCE C19 H17 SING N N 64 UCE C23 H18 SING N N 65 UCE C25 H19 SING N N 66 UCE C27 H20 SING N N 67 UCE C29 H21 SING N N 68 UCE C29 H22 SING N N 69 UCE C30 H23 SING N N 70 UCE C30 H24 SING N N 71 UCE C32 H25 SING N N 72 UCE C36 H26 SING N N 73 UCE C36 H27 SING N N 74 UCE C37 H28 SING N N 75 UCE C37 H29 SING N N 76 UCE C37 H30 SING N N 77 UCE C39 H31 SING N N 78 UCE C40 H32 SING N N 79 UCE N34 H34 SING N N 80 UCE N42 H35 SING N N 81 UCE O18 H36 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UCE InChI InChI 1.03 "InChI=1S/C34H35N5O3/c1-2-32(41)36-27-12-13-30-31(19-27)39(34(42)37-30)28-14-16-38(17-15-28)21-23-8-10-26(11-9-23)33-29(18-24(22-40)20-35-33)25-6-4-3-5-7-25/h3-13,18-20,28,40H,2,14-17,21-22H2,1H3,(H,36,41)(H,37,42)" UCE InChIKey InChI 1.03 XYDKMXKWNYYJAT-UHFFFAOYSA-N UCE SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5ncc(CO)cc5c6ccccc6)c2c1" UCE SMILES CACTVS 3.385 "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5ncc(CO)cc5c6ccccc6)c2c1" UCE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)c5c(cc(cn5)CO)c6ccccc6" UCE SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)c5c(cc(cn5)CO)c6ccccc6" # _pdbx_chem_comp_identifier.comp_id UCE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[1-[[4-[5-(hydroxymethyl)-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UCE "Create component" 2021-02-10 PDBE UCE "Initial release" 2021-09-08 RCSB ##