data_UCG # _chem_comp.id UCG _chem_comp.name ;3'-O-[(R)-{[(2R,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]uridine 5'-(dihydrogen phosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 N7 O18 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-08-19 _chem_comp.pdbx_modified_date 2015-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 731.351 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UCG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4R07 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UCG O4 O4 O 0 1 N N N 26.972 -8.493 37.554 -8.024 -5.772 0.444 O4 UCG 1 UCG C7 C7 C 0 1 N N N 27.936 -7.892 38.013 -7.238 -4.842 0.450 C7 UCG 2 UCG C5 C5 C 0 1 N N N 27.775 -7.187 39.190 -7.497 -3.683 -0.319 C5 UCG 3 UCG C6 C6 C 0 1 N N N 28.839 -6.511 39.752 -6.609 -2.666 -0.294 C6 UCG 4 UCG N1 N1 N 0 1 N N N 29.114 -7.927 37.431 -6.116 -4.906 1.195 N1 UCG 5 UCG C8 C8 C 0 1 N N N 30.123 -7.276 37.967 -5.247 -3.877 1.202 C8 UCG 6 UCG O5 O5 O 0 1 N N N 31.193 -7.329 37.423 -4.240 -3.948 1.878 O5 UCG 7 UCG N N N 0 1 N N N 30.021 -6.547 39.159 -5.479 -2.772 0.471 N UCG 8 UCG C C C 0 1 N N R 31.166 -5.808 39.708 -4.515 -1.669 0.498 C UCG 9 UCG C1 C1 C 0 1 N N R 30.852 -4.324 39.822 -3.865 -1.477 -0.895 C1 UCG 10 UCG O2 O2 O 0 1 N N N 31.986 -3.582 39.506 -2.731 -2.333 -1.051 O2 UCG 11 UCG O O O 0 1 N N N 31.528 -6.222 41.009 -5.187 -0.412 0.732 O UCG 12 UCG C3 C3 C 0 1 N N R 31.473 -5.136 41.935 -4.316 0.625 0.252 C3 UCG 13 UCG C4 C4 C 0 1 N N N 30.955 -5.632 43.273 -5.144 1.774 -0.326 C4 UCG 14 UCG O1 O1 O 0 1 N N N 29.702 -5.074 43.595 -5.883 2.403 0.723 O1 UCG 15 UCG P P P 0 1 N N N 28.443 -5.909 44.045 -6.865 3.655 0.475 P UCG 16 UCG O6 O6 O 0 1 N N N 28.917 -7.229 44.447 -8.098 3.194 -0.453 O6 UCG 17 UCG O7 O7 O 0 1 N N N 27.699 -5.237 45.275 -7.426 4.186 1.887 O7 UCG 18 UCG O8 O8 O 0 1 N N N 27.403 -5.965 42.837 -6.120 4.741 -0.200 O8 UCG 19 UCG C2 C2 C 0 1 N N S 30.627 -4.064 41.274 -3.433 0.009 -0.850 C2 UCG 20 UCG O3 O3 O 0 1 N N N 31.080 -2.805 41.689 -2.051 0.118 -0.504 O3 UCG 21 UCG P1 P1 P 0 1 N N N 30.219 -1.488 41.605 -0.965 0.839 -1.449 P1 UCG 22 UCG O15 O15 O 0 1 N N N 31.067 -0.450 42.114 -0.810 0.007 -2.819 O15 UCG 23 UCG O14 O14 O 0 1 N N N 29.749 -1.285 40.132 -1.413 2.215 -1.756 O14 UCG 24 UCG O11 O11 O 0 1 N N N 28.902 -1.692 42.443 0.455 0.892 -0.691 O11 UCG 25 UCG C18 C18 C 0 1 N N N 28.892 -1.888 43.834 1.597 1.564 -1.225 C18 UCG 26 UCG C17 C17 C 0 1 N N R 27.504 -1.567 44.360 2.772 1.421 -0.256 C17 UCG 27 UCG C16 C16 C 0 1 N N R 26.429 -2.127 43.463 4.022 2.149 -0.803 C16 UCG 28 UCG P2 P2 P 0 1 N N N 23.994 -2.430 43.440 5.244 3.672 0.646 P2 UCG 29 UCG O16 O16 O 0 1 N N N 23.697 -3.486 42.330 6.439 4.217 -0.034 O16 UCG 30 UCG O17 O17 O 0 1 N N N 22.905 -2.201 44.332 4.833 4.591 1.903 O17 UCG 31 UCG O12 O12 O 0 1 N N N 24.457 -1.163 42.685 5.491 2.126 1.112 O12 UCG 32 UCG O13 O13 O 0 1 N N N 25.368 -2.703 44.163 4.001 3.522 -0.395 O13 UCG 33 UCG C15 C15 C 0 1 N N R 25.806 -0.914 42.863 5.179 1.398 -0.100 C15 UCG 34 UCG O10 O10 O 0 1 N N N 27.296 -0.177 44.370 3.197 0.043 -0.170 O10 UCG 35 UCG C14 C14 C 0 1 N N R 26.000 0.082 43.949 4.551 0.049 0.310 C14 UCG 36 UCG N4 N4 N 0 1 Y N N 25.919 1.411 43.401 5.300 -1.054 -0.297 N4 UCG 37 UCG C13 C13 C 0 1 Y N N 25.195 2.385 43.891 4.998 -1.686 -1.469 C13 UCG 38 UCG N5 N5 N 0 1 Y N N 25.322 3.489 43.177 5.875 -2.617 -1.706 N5 UCG 39 UCG C10 C10 C 0 1 Y N N 26.552 1.855 42.357 6.434 -1.635 0.203 C10 UCG 40 UCG C9 C9 C 0 1 Y N N 26.145 3.217 42.203 6.789 -2.638 -0.706 C9 UCG 41 UCG N2 N2 N 0 1 N N N 27.398 1.342 41.478 7.179 -1.437 1.297 N2 UCG 42 UCG C12 C12 C 0 1 N N N 27.877 2.076 40.473 8.247 -2.165 1.532 C12 UCG 43 UCG N6 N6 N 0 1 N N N 28.729 1.511 39.625 8.980 -1.926 2.667 N6 UCG 44 UCG N3 N3 N 0 1 N N N 27.534 3.344 40.304 8.649 -3.150 0.680 N3 UCG 45 UCG C11 C11 C 0 1 N N N 26.705 3.956 41.091 7.941 -3.415 -0.440 C11 UCG 46 UCG O9 O9 O 0 1 N N N 26.406 5.111 40.929 8.292 -4.295 -1.208 O9 UCG 47 UCG H1 H1 H 0 1 N N N 26.810 -7.165 39.674 -8.392 -3.612 -0.919 H1 UCG 48 UCG H2 H2 H 0 1 N N N 28.708 -5.957 40.669 -6.789 -1.773 -0.875 H2 UCG 49 UCG H3 H3 H 0 1 N N N 29.242 -8.446 36.586 -5.933 -5.695 1.728 H3 UCG 50 UCG H4 H4 H 0 1 N N N 32.024 -5.926 39.030 -3.753 -1.846 1.257 H4 UCG 51 UCG H5 H5 H 0 1 N N N 29.972 -4.055 39.219 -4.591 -1.648 -1.690 H5 UCG 52 UCG H6 H6 H 0 1 N N N 31.789 -2.655 39.578 -2.939 -3.276 -0.995 H6 UCG 53 UCG H7 H7 H 0 1 N N N 32.485 -4.732 42.086 -3.692 0.992 1.067 H7 UCG 54 UCG H8 H8 H 0 1 N N N 30.856 -6.727 43.231 -4.480 2.503 -0.790 H8 UCG 55 UCG H9 H9 H 0 1 N N N 31.677 -5.359 44.057 -5.834 1.384 -1.074 H9 UCG 56 UCG H10 H10 H 0 1 N N N 28.509 -7.892 43.902 -8.632 2.483 -0.073 H10 UCG 57 UCG H11 H11 H 0 1 N N N 26.809 -5.018 45.026 -8.026 4.941 1.814 H11 UCG 58 UCG H12 H12 H 0 1 N N N 29.567 -4.216 41.527 -3.625 0.491 -1.809 H12 UCG 59 UCG H13 H13 H 0 1 N N N 31.202 0.207 41.442 -0.518 -0.906 -2.694 H13 UCG 60 UCG H14 H14 H 0 1 N N N 29.142 -2.935 44.062 1.863 1.121 -2.185 H14 UCG 61 UCG H15 H15 H 0 1 N N N 29.630 -1.223 44.307 1.367 2.620 -1.364 H15 UCG 62 UCG H16 H16 H 0 1 N N N 27.393 -1.987 45.370 2.504 1.801 0.730 H16 UCG 63 UCG H17 H17 H 0 1 N N N 26.852 -2.790 42.694 4.086 2.063 -1.888 H17 UCG 64 UCG H18 H18 H 0 1 N N N 22.170 -2.750 44.083 5.540 4.711 2.551 H18 UCG 65 UCG H19 H19 H 0 1 N N N 26.319 -0.611 41.938 6.049 1.279 -0.746 H19 UCG 66 UCG H20 H20 H 0 1 N N N 25.263 -0.068 44.751 4.560 -0.049 1.396 H20 UCG 67 UCG H21 H21 H 0 1 N N N 24.572 2.297 44.769 4.157 -1.449 -2.103 H21 UCG 68 UCG H23 H23 H 0 1 N N N 28.998 0.556 39.748 8.706 -1.228 3.283 H23 UCG 69 UCG H24 H24 H 0 1 N N N 29.102 2.041 38.863 9.771 -2.455 2.854 H24 UCG 70 UCG H22 H22 H 0 1 N N N 27.931 3.850 39.538 9.443 -3.669 0.883 H22 UCG 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UCG O5 C8 DOUB N N 1 UCG N1 C8 SING N N 2 UCG N1 C7 SING N N 3 UCG O4 C7 DOUB N N 4 UCG C8 N SING N N 5 UCG C7 C5 SING N N 6 UCG N C SING N N 7 UCG N C6 SING N N 8 UCG C5 C6 DOUB N N 9 UCG O2 C1 SING N N 10 UCG N6 C12 SING N N 11 UCG C C1 SING N N 12 UCG C O SING N N 13 UCG C1 C2 SING N N 14 UCG O14 P1 DOUB N N 15 UCG N3 C12 SING N N 16 UCG N3 C11 SING N N 17 UCG C12 N2 DOUB N N 18 UCG O9 C11 DOUB N N 19 UCG O C3 SING N N 20 UCG C11 C9 SING N N 21 UCG C2 O3 SING N N 22 UCG C2 C3 SING N N 23 UCG N2 C10 SING N N 24 UCG P1 O3 SING N N 25 UCG P1 O15 SING N N 26 UCG P1 O11 SING N N 27 UCG C3 C4 SING N N 28 UCG C9 C10 DOUB Y N 29 UCG C9 N5 SING Y N 30 UCG O16 P2 DOUB N N 31 UCG C10 N4 SING Y N 32 UCG O11 C18 SING N N 33 UCG O12 C15 SING N N 34 UCG O12 P2 SING N N 35 UCG O8 P DOUB N N 36 UCG C15 C16 SING N N 37 UCG C15 C14 SING N N 38 UCG N5 C13 DOUB Y N 39 UCG C4 O1 SING N N 40 UCG N4 C13 SING Y N 41 UCG N4 C14 SING N N 42 UCG P2 O13 SING N N 43 UCG P2 O17 SING N N 44 UCG C16 O13 SING N N 45 UCG C16 C17 SING N N 46 UCG O1 P SING N N 47 UCG C18 C17 SING N N 48 UCG C14 O10 SING N N 49 UCG P O6 SING N N 50 UCG P O7 SING N N 51 UCG C17 O10 SING N N 52 UCG C5 H1 SING N N 53 UCG C6 H2 SING N N 54 UCG N1 H3 SING N N 55 UCG C H4 SING N N 56 UCG C1 H5 SING N N 57 UCG O2 H6 SING N N 58 UCG C3 H7 SING N N 59 UCG C4 H8 SING N N 60 UCG C4 H9 SING N N 61 UCG O6 H10 SING N N 62 UCG O7 H11 SING N N 63 UCG C2 H12 SING N N 64 UCG O15 H13 SING N N 65 UCG C18 H14 SING N N 66 UCG C18 H15 SING N N 67 UCG C17 H16 SING N N 68 UCG C16 H17 SING N N 69 UCG O17 H18 SING N N 70 UCG C15 H19 SING N N 71 UCG C14 H20 SING N N 72 UCG C13 H21 SING N N 73 UCG N6 H23 SING N N 74 UCG N6 H24 SING N N 75 UCG N3 H22 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UCG SMILES ACDLabs 12.01 "O=P(O)(O)OCC6OC(N1C=CC(=O)NC1=O)C(O)C6OP(=O)(O)OCC4OC(n2c3N=C(N)NC(=O)c3nc2)C5OP(=O)(O)OC45" UCG InChI InChI 1.03 ;InChI=1S/C19H24N7O18P3/c20-18-23-14-9(15(29)24-18)21-5-26(14)17-13-12(43-47(36,37)44-13)7(41-17)4-39-46(34,35)42-11-6(3-38-45(31,32)33)40-16(10(11)28)25-2-1-8(27)22-19(25)30/h1-2,5-7,10-13,16-17,28H,3-4H2,(H,34,35)(H,36,37)(H,22,27,30)(H2,31,32,33)(H3,20,23,24,29)/t6-,7-,10-,11-,12-,13-,16-,17-/m1/s1 ; UCG InChIKey InChI 1.03 UIVVUPHFWRPLKC-VMIOUTBZSA-N UCG SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[C@H]4[C@@H](O)[C@@H](O[C@@H]4CO[P](O)(O)=O)N5C=CC(=O)NC5=O)[C@H]6O[P](O)(=O)O[C@@H]36" UCG SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](O[CH]4CO[P](O)(O)=O)N5C=CC(=O)NC5=O)[CH]6O[P](O)(=O)O[CH]36" UCG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O)O[C@@H]5[C@H](O[C@H]([C@@H]5O)N6C=CC(=O)NC6=O)COP(=O)(O)O)OP(=O)(O4)O)N=C(NC2=O)N" UCG SMILES "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3C4C(C(O3)COP(=O)(O)OC5C(OC(C5O)N6C=CC(=O)NC6=O)COP(=O)(O)O)OP(=O)(O4)O)N=C(NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UCG "SYSTEMATIC NAME" ACDLabs 12.01 ;3'-O-[(R)-{[(2R,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]uridine 5'-(dihydrogen phosphate) ; UCG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;[(3aR,4R,6R,6aR)-4-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-2-oxidanyl-2-oxidanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methyl [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UCG "Create component" 2014-08-19 PDBJ UCG "Initial release" 2015-01-14 RCSB #