data_UCP # _chem_comp.id UCP _chem_comp.name "PHOSPHOMETHYL PHOSPHONIC ACID DEOXYURIDYLATE ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N2 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.169 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UCP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UCP N1 N1 N 0 1 N N N 36.019 21.853 10.411 -0.373 0.514 5.210 N1 UCP 1 UCP C2 C2 C 0 1 N N N 36.748 21.612 9.251 -1.012 -0.657 5.036 C2 UCP 2 UCP O2 O2 O 0 1 N N N 36.147 21.435 8.231 -0.574 -1.466 4.242 O2 UCP 3 UCP N3 N3 N 0 1 N N N 38.131 21.585 9.298 -2.123 -0.949 5.737 N3 UCP 4 UCP C4 C4 C 0 1 N N N 38.752 21.789 10.481 -2.622 -0.062 6.622 C4 UCP 5 UCP O4 O4 O 0 1 N N N 40.045 21.748 10.492 -3.630 -0.324 7.253 O4 UCP 6 UCP C5 C5 C 0 1 N N N 38.071 22.024 11.655 -1.963 1.176 6.810 C5 UCP 7 UCP C6 C6 C 0 1 N N N 36.751 22.043 11.581 -0.847 1.441 6.098 C6 UCP 8 UCP "C1'" C1* C 0 1 N N R 34.643 22.014 11.144 0.836 0.802 4.437 "C1'" UCP 9 UCP "C2'" C2* C 0 1 N N N 34.363 20.890 12.162 1.929 -0.248 4.736 "C2'" UCP 10 UCP "C3'" C3* C 0 1 N N S 34.274 21.563 13.538 2.625 -0.465 3.374 "C3'" UCP 11 UCP "O3'" O3* O 0 1 N N N 33.166 20.837 14.086 4.005 -0.102 3.454 "O3'" UCP 12 UCP "C4'" C4* C 0 1 N N R 34.422 23.078 13.228 1.872 0.477 2.410 "C4'" UCP 13 UCP "O4'" O4* O 0 1 N N N 34.642 23.277 11.806 0.576 0.670 3.022 "O4'" UCP 14 UCP "C5'" C5* C 0 1 N N N 35.632 23.628 13.809 1.719 -0.169 1.032 "C5'" UCP 15 UCP "O5'" O5* O 0 1 N N N 35.363 24.290 14.888 0.957 0.691 0.183 "O5'" UCP 16 UCP PA PA P 0 1 N N S 36.464 24.031 15.933 0.836 -0.048 -1.241 PA UCP 17 UCP O1A O1A O 0 1 N N N 35.997 24.928 17.078 0.154 -1.349 -1.065 O1A UCP 18 UCP O2A O2A O 0 1 N N N 37.817 24.192 15.138 2.308 -0.290 -1.846 O2A UCP 19 UCP O3A O3A O 0 1 N N N 36.326 22.476 16.326 -0.014 0.871 -2.252 O3A UCP 20 UCP PB PB P 0 1 N N R 35.237 21.804 17.112 -0.095 0.075 -3.649 PB UCP 21 UCP O1B O1B O 0 1 N N N 34.788 20.606 16.403 -0.763 -1.228 -3.436 O1B UCP 22 UCP O2B O2B O 0 1 N N N 34.240 23.051 17.446 1.392 -0.169 -4.214 O2B UCP 23 UCP CC CC C 0 1 N N N 36.125 21.571 18.285 -1.049 1.056 -4.854 CC UCP 24 UCP PG PG P 0 1 N N N 36.131 22.420 19.688 -1.140 0.155 -6.435 PG UCP 25 UCP O1G O1G O 0 1 N N N 35.082 23.594 19.629 -1.808 -1.148 -6.222 O1G UCP 26 UCP O2G O2G O 0 1 N N N 35.943 21.415 20.716 -1.982 1.021 -7.499 O2G UCP 27 UCP O3G O3G O 0 1 N N N 37.503 22.931 19.714 0.346 -0.089 -7.000 O3G UCP 28 UCP HN3 HN3 H 0 1 N N N 38.691 21.415 8.462 -2.570 -1.800 5.602 HN3 UCP 29 UCP H5 H5 H 0 1 N N N 38.567 22.191 12.625 -2.347 1.899 7.515 H5 UCP 30 UCP H6 H6 H 0 1 N N N 36.236 22.225 12.539 -0.330 2.380 6.229 H6 UCP 31 UCP "H1'" H1* H 0 1 N N N 33.833 21.951 10.379 1.201 1.803 4.663 "H1'" UCP 32 UCP "H2'1" 1H2* H 0 0 N N N 33.464 20.279 11.909 1.479 -1.177 5.088 "H2'1" UCP 33 UCP "H2'2" 2H2* H 0 0 N N N 35.108 20.062 12.122 2.637 0.135 5.471 "H2'2" UCP 34 UCP "H3'" H3* H 0 1 N N N 35.004 21.527 14.379 2.521 -1.502 3.053 "H3'" UCP 35 UCP "HO'3" 3HO* H 0 0 N N N 33.110 21.253 14.938 4.415 -0.703 4.090 "HO'3" UCP 36 UCP "H4'" H4* H 0 1 N N N 33.495 23.556 13.622 2.396 1.429 2.325 "H4'" UCP 37 UCP "H5'1" 1H5* H 0 0 N N N 36.399 22.839 13.989 2.704 -0.331 0.595 "H5'1" UCP 38 UCP "H5'2" 2H5* H 0 0 N N N 36.197 24.247 13.074 1.205 -1.125 1.135 "H5'2" UCP 39 UCP HOA2 2HOA H 0 0 N N N 38.496 24.032 15.782 2.717 0.579 -1.945 HOA2 UCP 40 UCP HOB2 2HOB H 0 0 N N N 33.551 22.625 17.943 1.790 0.702 -4.339 HOB2 UCP 41 UCP HCC1 1HCC H 0 0 N N N 35.991 20.501 18.568 -2.056 1.222 -4.471 HCC1 UCP 42 UCP HCC2 2HCC H 0 0 N N N 37.169 21.604 17.896 -0.557 2.016 -5.010 HCC2 UCP 43 UCP HOG2 2HOG H 0 0 N N N 35.946 21.906 21.528 -2.007 0.510 -8.319 HOG2 UCP 44 UCP HOG3 3HOG H 0 0 N N N 37.506 23.422 20.526 0.745 0.782 -7.125 HOG3 UCP 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UCP N1 C2 SING N N 1 UCP N1 C6 SING N N 2 UCP N1 "C1'" SING N N 3 UCP C2 O2 DOUB N N 4 UCP C2 N3 SING N N 5 UCP N3 C4 SING N N 6 UCP N3 HN3 SING N N 7 UCP C4 O4 DOUB N N 8 UCP C4 C5 SING N N 9 UCP C5 C6 DOUB N N 10 UCP C5 H5 SING N N 11 UCP C6 H6 SING N N 12 UCP "C1'" "C2'" SING N N 13 UCP "C1'" "O4'" SING N N 14 UCP "C1'" "H1'" SING N N 15 UCP "C2'" "C3'" SING N N 16 UCP "C2'" "H2'1" SING N N 17 UCP "C2'" "H2'2" SING N N 18 UCP "C3'" "O3'" SING N N 19 UCP "C3'" "C4'" SING N N 20 UCP "C3'" "H3'" SING N N 21 UCP "O3'" "HO'3" SING N N 22 UCP "C4'" "O4'" SING N N 23 UCP "C4'" "C5'" SING N N 24 UCP "C4'" "H4'" SING N N 25 UCP "C5'" "O5'" SING N N 26 UCP "C5'" "H5'1" SING N N 27 UCP "C5'" "H5'2" SING N N 28 UCP "O5'" PA SING N N 29 UCP PA O1A DOUB N N 30 UCP PA O2A SING N N 31 UCP PA O3A SING N N 32 UCP O2A HOA2 SING N N 33 UCP O3A PB SING N N 34 UCP PB O1B DOUB N N 35 UCP PB O2B SING N N 36 UCP PB CC SING N N 37 UCP O2B HOB2 SING N N 38 UCP CC PG SING N N 39 UCP CC HCC1 SING N N 40 UCP CC HCC2 SING N N 41 UCP PG O1G DOUB N N 42 UCP PG O2G SING N N 43 UCP PG O3G SING N N 44 UCP O2G HOG2 SING N N 45 UCP O3G HOG3 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UCP SMILES ACDLabs 10.04 "O=P(O)(O)CP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)CC2O" UCP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P@@](O)(=O)O[P@@](O)(=O)C[P](O)(O)=O)N2C=CC(=O)NC2=O" UCP SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)C[P](O)(O)=O)N2C=CC(=O)NC2=O" UCP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O)(O)O[P@@](=O)(CP(=O)(O)O)O)O" UCP SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(CP(=O)(O)O)O)O" UCP InChI InChI 1.03 "InChI=1S/C10H17N2O13P3/c13-6-3-9(12-2-1-8(14)11-10(12)15)24-7(6)4-23-28(21,22)25-27(19,20)5-26(16,17)18/h1-2,6-7,9,13H,3-5H2,(H,19,20)(H,21,22)(H,11,14,15)(H2,16,17,18)/t6-,7+,9+/m0/s1" UCP InChIKey InChI 1.03 LXPTZNQPTTZWKK-LKEWCRSYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UCP "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]oxy}phosphoryl]uridine" UCP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UCP "Create component" 1999-07-08 RCSB UCP "Modify descriptor" 2011-06-04 RCSB #