data_UCY
#
_chem_comp.id UCY
_chem_comp.name "(1S)-2,2-dimethylcyclopentyl (R)-methylphosphinate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H17 O2 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "2,2-dimethylcyclopentyl methylphosphinate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-05-07
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 176.193
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UCY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6WVQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UCY C10 C1 C 0 1 N N N N N N 53.972 26.050 21.553 3.322 -0.632 -0.962 C10 UCY 1
UCY P09 P1 P 0 1 N N R N N N 54.970 25.864 23.113 2.074 -0.117 0.264 P09 UCY 2
UCY O12 O1 O 0 1 N N N N N N 54.090 25.475 24.211 2.466 1.184 0.850 O12 UCY 3
UCY C01 C2 C 0 1 N N N N N N 58.666 25.230 22.434 -1.062 -1.860 -0.685 C01 UCY 4
UCY C02 C3 C 0 1 N N N N N N 58.409 24.745 23.859 -1.607 -0.687 0.132 C02 UCY 5
UCY C03 C4 C 0 1 N N N N N N 58.733 25.846 24.867 -2.008 -1.164 1.530 C03 UCY 6
UCY C04 C5 C 0 1 N N N N N N 59.288 23.443 24.164 -2.822 -0.063 -0.584 C04 UCY 7
UCY C05 C6 C 0 1 N N N N N N 58.417 22.529 24.700 -2.680 1.457 -0.320 C05 UCY 8
UCY C06 C7 C 0 1 N N N N N N 56.921 22.913 24.080 -1.150 1.679 -0.416 C06 UCY 9
UCY C07 C8 C 0 1 N N S N N N 56.884 24.283 24.020 -0.543 0.420 0.239 C07 UCY 10
UCY O08 O2 O 0 1 N N N N N N 56.120 24.704 22.893 0.642 0.029 -0.457 O08 UCY 11
UCY H1 H1 H 0 1 N N N N N N 53.204 26.824 21.698 4.291 -0.731 -0.474 H1 UCY 12
UCY H2 H2 H 0 1 N N N N N N 54.636 26.343 20.726 3.033 -1.590 -1.393 H2 UCY 13
UCY H3 H3 H 0 1 N N N N N N 53.487 25.093 21.312 3.387 0.117 -1.751 H3 UCY 14
UCY H5 H5 H 0 1 N N N N N N 59.716 25.544 22.337 -0.174 -2.261 -0.197 H5 UCY 15
UCY H6 H6 H 0 1 N N N N N N 58.461 24.413 21.726 -1.822 -2.638 -0.755 H6 UCY 16
UCY H7 H7 H 0 1 N N N N N N 58.006 26.082 22.212 -0.802 -1.515 -1.686 H7 UCY 17
UCY H8 H8 H 0 1 N N N N N N 58.542 25.479 25.886 -1.135 -1.568 2.040 H8 UCY 18
UCY H9 H9 H 0 1 N N N N N N 59.791 26.130 24.772 -2.406 -0.324 2.100 H9 UCY 19
UCY H10 H10 H 0 1 N N N N N N 58.099 26.723 24.669 -2.770 -1.939 1.444 H10 UCY 20
UCY H11 H11 H 0 1 N N N N N N 59.732 23.053 23.236 -2.783 -0.270 -1.653 H11 UCY 21
UCY H12 H12 H 0 1 N N N N N N 60.088 23.679 24.882 -3.751 -0.438 -0.156 H12 UCY 22
UCY H13 H13 H 0 1 N N N N N N 58.408 22.606 25.797 -3.202 2.032 -1.084 H13 UCY 23
UCY H14 H14 H 0 1 N N N N N N 58.703 21.508 24.406 -3.048 1.713 0.673 H14 UCY 24
UCY H15 H15 H 0 1 N N N N N N 56.125 22.536 24.739 -0.840 1.753 -1.459 H15 UCY 25
UCY H16 H16 H 0 1 N N N N N N 56.800 22.482 23.075 -0.859 2.575 0.132 H16 UCY 26
UCY H17 H17 H 0 1 N N N N N N 56.485 24.719 24.948 -0.314 0.618 1.286 H17 UCY 27
UCY H18 H18 H 0 1 N N N N N N 55.601 27.113 23.355 1.990 -1.093 1.292 H18 UCY 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UCY C10 P09 SING N N 1
UCY C01 C02 SING N N 2
UCY O08 P09 SING N N 3
UCY O08 C07 SING N N 4
UCY P09 O12 DOUB N N 5
UCY C02 C07 SING N N 6
UCY C02 C04 SING N N 7
UCY C02 C03 SING N N 8
UCY C07 C06 SING N N 9
UCY C06 C05 SING N N 10
UCY C04 C05 SING N N 11
UCY C10 H1 SING N N 12
UCY C10 H2 SING N N 13
UCY C10 H3 SING N N 14
UCY C01 H5 SING N N 15
UCY C01 H6 SING N N 16
UCY C01 H7 SING N N 17
UCY C03 H8 SING N N 18
UCY C03 H9 SING N N 19
UCY C03 H10 SING N N 20
UCY C04 H11 SING N N 21
UCY C04 H12 SING N N 22
UCY C05 H13 SING N N 23
UCY C05 H14 SING N N 24
UCY C06 H15 SING N N 25
UCY C06 H16 SING N N 26
UCY C07 H17 SING N N 27
UCY P09 H18 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UCY SMILES ACDLabs 12.01 "CP(=O)OC1C(C)(CCC1)C"
UCY InChI InChI 1.03 "InChI=1S/C8H17O2P/c1-8(2)6-4-5-7(8)10-11(3)9/h7,11H,4-6H2,1-3H3/t7-/m0/s1"
UCY InChIKey InChI 1.03 GJIHMVVDUGLKHR-ZETCQYMHSA-N
UCY SMILES_CANONICAL CACTVS 3.385 "C[P@H](=O)O[C@H]1CCCC1(C)C"
UCY SMILES CACTVS 3.385 "C[PH](=O)O[CH]1CCCC1(C)C"
UCY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCC[C@@H]1O[P@H](=O)C)C"
UCY SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCCC1OP(=O)C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UCY "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-2,2-dimethylcyclopentyl (R)-methylphosphinate"
UCY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-1,1-dimethyl-2-methylphosphonoyloxy-cyclopentane"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UCY "Create component" 2020-05-07 RCSB
UCY "Initial release" 2021-02-17 RCSB
UCY "Modify synonyms" 2021-03-13 RCSB
UCY "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id UCY
_pdbx_chem_comp_synonyms.name "2,2-dimethylcyclopentyl methylphosphinate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id UCY
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom P09
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#