data_UDA
#
_chem_comp.id UDA
_chem_comp.name "3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY-URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H32 N3 O23 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-08-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 775.396
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UDA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Q3G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UDA C1 C1 C 0 1 N N N 28.966 51.166 -22.009 -3.989 -0.004 8.277 C1 UDA 1
UDA N1 N1 N 0 1 N N N 28.596 50.152 -21.142 -3.129 -0.846 7.669 N1 UDA 2
UDA C3 C3 C 0 1 N N N 27.349 49.699 -20.924 -1.884 -0.438 7.360 C3 UDA 3
UDA N2 N2 N 0 1 N N N 26.253 50.297 -21.641 -1.470 0.806 7.658 N2 UDA 4
UDA C5 C5 C 0 1 N N N 26.541 51.359 -22.564 -2.312 1.691 8.275 C5 UDA 5
UDA C6 C6 C 0 1 N N N 27.860 51.798 -22.762 -3.568 1.310 8.592 C6 UDA 6
UDA O1 O1 O 0 1 N N N 30.140 51.501 -22.122 -5.117 -0.371 8.553 O1 UDA 7
UDA O2 O2 O 0 1 N N N 27.198 48.791 -20.114 -1.120 -1.208 6.811 O2 UDA 8
UDA C9 C9 C 0 1 N N R 23.864 50.862 -20.930 0.932 0.255 7.937 C9 UDA 9
UDA C2 C2 C 0 1 N N R 24.820 49.837 -21.430 -0.108 1.220 7.314 C2 UDA 10
UDA O3 O3 O 0 1 N N N 24.294 49.418 -22.682 0.119 1.089 5.894 O3 UDA 11
UDA C4 C4 C 0 1 N N R 22.885 49.649 -22.708 1.541 1.014 5.702 C4 UDA 12
UDA C15 C15 C 0 1 N N S 22.489 50.251 -21.298 2.152 0.441 6.996 C15 UDA 13
UDA C12 C12 C 0 1 N N N 22.689 50.578 -23.922 1.859 0.091 4.524 C12 UDA 14
UDA O14 O14 O 0 1 N N N 22.106 49.371 -20.154 3.087 1.359 7.565 O14 UDA 15
UDA O11 O11 O 0 1 N N N 24.145 51.489 -19.575 1.255 0.647 9.272 O11 UDA 16
UDA O4 O4 O 0 1 N N N 23.422 51.872 -23.872 1.283 0.626 3.331 O4 UDA 17
UDA P1 P1 P 0 1 N N S 23.878 52.610 -25.163 1.655 -0.389 2.138 P1 UDA 18
UDA O5 O5 O 0 1 N N N 23.475 51.770 -26.305 1.095 -1.726 2.437 O5 UDA 19
UDA O6 O6 O 0 1 N N N 25.328 52.827 -25.243 3.256 -0.495 2.003 O6 UDA 20
UDA O7 O7 O 0 1 N N N 23.030 53.821 -25.436 1.034 0.154 0.756 O7 UDA 21
UDA P2 P2 P 0 1 N N R 23.411 55.312 -25.272 1.442 -0.903 -0.385 P2 UDA 22
UDA O8 O8 O 0 1 N N N 22.220 56.259 -25.720 0.851 -0.419 -1.802 O8 UDA 23
UDA O9 O9 O 0 1 N N N 24.485 55.617 -26.109 0.886 -2.233 -0.047 O9 UDA 24
UDA O10 O10 O 0 1 N N N 23.753 55.648 -23.908 3.046 -1.001 -0.479 O10 UDA 25
UDA C10 C10 C 0 1 N N R 21.589 56.285 -27.043 1.244 -1.394 -2.770 C10 UDA 26
UDA C18 C18 C 0 1 N N R 20.468 57.376 -27.056 1.407 -0.720 -4.134 C18 UDA 27
UDA C13 C13 C 0 1 N N R 19.352 57.042 -26.006 0.079 -0.069 -4.533 C13 UDA 28
UDA C20 C20 C 0 1 N N S 18.762 55.662 -26.495 -1.028 -1.125 -4.453 C20 UDA 29
UDA C16 C16 C 0 1 N N R 19.887 54.561 -26.496 -1.007 -1.768 -3.064 C16 UDA 30
UDA C17 C17 C 0 1 N N N 19.397 53.201 -26.991 -2.131 -2.802 -2.967 C17 UDA 31
UDA C7 C7 C 0 1 N N N 21.950 59.304 -27.468 3.733 -0.018 -4.316 C7 UDA 32
UDA N3 N3 N 0 1 N N N 21.059 58.669 -26.730 2.451 0.303 -4.053 N3 UDA 33
UDA O21 O21 O 0 1 N N N 18.270 58.074 -25.992 0.166 0.433 -5.868 O21 UDA 34
UDA O22 O22 O 0 1 N N N 17.679 55.088 -25.663 -2.298 -0.508 -4.674 O22 UDA 35
UDA O23 O23 O 0 1 N N N 20.964 55.032 -27.371 0.247 -2.411 -2.849 O23 UDA 36
UDA O24 O24 O 0 1 N N N 18.846 53.139 -28.383 -2.118 -3.399 -1.668 O24 UDA 37
UDA O12 O12 O 0 1 N N N 22.360 58.810 -28.536 4.023 -1.156 -4.619 O12 UDA 38
UDA C8 C8 C 0 1 N N N 22.375 60.635 -26.872 4.807 1.036 -4.233 C8 UDA 39
UDA C11 C11 C 0 1 N N S 17.758 58.683 -25.004 -0.621 1.624 -5.913 C11 UDA 40
UDA C19 C19 C 0 1 N N N 17.354 58.188 -23.636 -0.513 2.254 -7.303 C19 UDA 41
UDA O13 O13 O 0 1 N N N 18.691 59.845 -24.849 -1.986 1.303 -5.641 O13 UDA 42
UDA P3 P3 P 0 1 N N N 19.493 60.351 -23.594 -2.504 0.394 -6.865 P3 UDA 43
UDA O15 O15 O 0 1 N N N 19.538 61.678 -24.116 -3.852 -0.372 -6.431 O15 UDA 44
UDA O16 O16 O 0 1 N N N 20.851 59.734 -23.472 -2.806 1.332 -8.139 O16 UDA 45
UDA O17 O17 O 0 1 N N N 18.755 60.566 -22.361 -1.464 -0.597 -7.217 O17 UDA 46
UDA C14 C14 C 0 1 N N N 16.342 59.080 -25.646 -0.118 2.599 -4.880 C14 UDA 47
UDA O18 O18 O 0 1 N N N 16.401 60.260 -26.249 0.899 2.364 -4.273 O18 UDA 48
UDA O19 O19 O 0 1 N N N 15.321 58.446 -25.635 -0.801 3.728 -4.633 O19 UDA 49
UDA HN1 HN1 H 0 1 N N N 29.325 49.685 -20.602 -3.410 -1.748 7.450 HN1 UDA 50
UDA H6 H6 H 0 1 N N N 25.732 51.847 -23.132 -1.973 2.690 8.507 H6 UDA 51
UDA H7 H7 H 0 1 N N N 28.022 52.613 -23.486 -4.242 1.998 9.079 H7 UDA 52
UDA H9 H9 H 0 1 N N N 23.954 51.865 -21.406 0.573 -0.773 7.911 H9 UDA 53
UDA H3 H3 H 0 1 N N N 24.899 49.043 -20.650 0.074 2.244 7.639 H3 UDA 54
UDA H4 H4 H 0 1 N N N 22.225 48.759 -22.839 1.943 2.009 5.512 H4 UDA 55
UDA H5 H5 H 0 1 N N N 21.560 50.856 -21.417 2.631 -0.517 6.799 H5 UDA 56
UDA H121 1H12 H 0 0 N N N 22.942 50.033 -24.861 1.444 -0.898 4.715 H121 UDA 57
UDA H122 2H12 H 0 0 N N N 21.601 50.763 -24.086 2.940 0.014 4.403 H122 UDA 58
UDA H14 H14 H 0 1 N N N 21.262 48.996 -20.379 3.387 0.972 8.399 H14 UDA 59
UDA H11 H11 H 0 1 N N N 23.534 52.143 -19.255 1.904 0.010 9.601 H11 UDA 60
UDA HO6 HO6 H 0 1 N N N 25.606 53.277 -26.031 3.579 0.394 1.808 HO6 UDA 61
UDA H2 H2 H 0 1 N N N 23.986 56.563 -23.807 3.368 -0.116 -0.700 H2 UDA 62
UDA H10 H10 H 0 1 N N N 22.392 56.498 -27.785 2.193 -1.840 -2.470 H10 UDA 63
UDA H18 H18 H 0 1 N N N 20.006 57.402 -28.070 1.686 -1.467 -4.878 H18 UDA 64
UDA H13 H13 H 0 1 N N N 19.763 57.011 -24.970 -0.145 0.748 -3.849 H13 UDA 65
UDA H20 H20 H 0 1 N N N 18.349 55.907 -27.501 -0.857 -1.889 -5.211 H20 UDA 66
UDA H16 H16 H 0 1 N N N 20.229 54.411 -25.445 -1.155 -0.999 -2.307 H16 UDA 67
UDA H171 1H17 H 0 0 N N N 20.213 52.449 -26.881 -3.091 -2.312 -3.131 H171 UDA 68
UDA H172 2H17 H 0 0 N N N 18.644 52.794 -26.275 -1.982 -3.573 -3.723 H172 UDA 69
UDA HN3 HN3 H 0 1 N N N 20.821 59.190 -25.886 2.220 1.214 -3.811 HN3 UDA 70
UDA H22 H22 H 0 1 N N N 17.323 54.257 -25.957 -2.964 -1.206 -4.610 H22 UDA 71
UDA H24 H24 H 0 1 N N N 18.541 52.293 -28.690 -2.839 -4.042 -1.649 H24 UDA 72
UDA H81 1H8 H 0 1 N N N 23.127 61.171 -27.495 5.772 0.591 -4.477 H81 UDA 73
UDA H82 2H8 H 0 1 N N N 21.489 61.282 -26.672 4.586 1.836 -4.939 H82 UDA 74
UDA H83 3H8 H 0 1 N N N 22.743 60.503 -25.828 4.839 1.442 -3.222 H83 UDA 75
UDA H191 1H19 H 0 0 N N N 16.904 58.723 -22.767 -0.709 1.497 -8.062 H191 UDA 76
UDA H192 2H19 H 0 0 N N N 16.660 57.337 -23.835 -1.244 3.058 -7.396 H192 UDA 77
UDA H193 3H19 H 0 0 N N N 18.271 57.704 -23.226 0.489 2.658 -7.443 H193 UDA 78
UDA H15 H15 H 0 1 N N N 20.022 61.983 -23.358 -4.128 -0.903 -7.191 H15 UDA 79
UDA H1 H1 H 0 1 N N N 21.335 60.039 -22.714 -3.487 1.962 -7.867 H1 UDA 80
UDA H19 H19 H 0 1 N N N 14.482 58.681 -26.015 -0.479 4.353 -3.970 H19 UDA 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UDA C1 N1 SING N N 1
UDA C1 C6 SING N N 2
UDA C1 O1 DOUB N N 3
UDA N1 C3 SING N N 4
UDA N1 HN1 SING N N 5
UDA C3 N2 SING N N 6
UDA C3 O2 DOUB N N 7
UDA N2 C5 SING N N 8
UDA N2 C2 SING N N 9
UDA C5 C6 DOUB N N 10
UDA C5 H6 SING N N 11
UDA C6 H7 SING N N 12
UDA C9 C2 SING N N 13
UDA C9 C15 SING N N 14
UDA C9 O11 SING N N 15
UDA C9 H9 SING N N 16
UDA C2 O3 SING N N 17
UDA C2 H3 SING N N 18
UDA O3 C4 SING N N 19
UDA C4 C15 SING N N 20
UDA C4 C12 SING N N 21
UDA C4 H4 SING N N 22
UDA C15 O14 SING N N 23
UDA C15 H5 SING N N 24
UDA C12 O4 SING N N 25
UDA C12 H121 SING N N 26
UDA C12 H122 SING N N 27
UDA O14 H14 SING N N 28
UDA O11 H11 SING N N 29
UDA O4 P1 SING N N 30
UDA P1 O5 DOUB N N 31
UDA P1 O6 SING N N 32
UDA P1 O7 SING N N 33
UDA O6 HO6 SING N N 34
UDA O7 P2 SING N N 35
UDA P2 O8 SING N N 36
UDA P2 O9 DOUB N N 37
UDA P2 O10 SING N N 38
UDA O8 C10 SING N N 39
UDA O10 H2 SING N N 40
UDA C10 C18 SING N N 41
UDA C10 O23 SING N N 42
UDA C10 H10 SING N N 43
UDA C18 C13 SING N N 44
UDA C18 N3 SING N N 45
UDA C18 H18 SING N N 46
UDA C13 C20 SING N N 47
UDA C13 O21 SING N N 48
UDA C13 H13 SING N N 49
UDA C20 C16 SING N N 50
UDA C20 O22 SING N N 51
UDA C20 H20 SING N N 52
UDA C16 C17 SING N N 53
UDA C16 O23 SING N N 54
UDA C16 H16 SING N N 55
UDA C17 O24 SING N N 56
UDA C17 H171 SING N N 57
UDA C17 H172 SING N N 58
UDA C7 N3 SING N N 59
UDA C7 O12 DOUB N N 60
UDA C7 C8 SING N N 61
UDA N3 HN3 SING N N 62
UDA O21 C11 SING N N 63
UDA O22 H22 SING N N 64
UDA O24 H24 SING N N 65
UDA C8 H81 SING N N 66
UDA C8 H82 SING N N 67
UDA C8 H83 SING N N 68
UDA C11 C19 SING N N 69
UDA C11 O13 SING N N 70
UDA C11 C14 SING N N 71
UDA C19 H191 SING N N 72
UDA C19 H192 SING N N 73
UDA C19 H193 SING N N 74
UDA O13 P3 SING N N 75
UDA P3 O15 SING N N 76
UDA P3 O16 SING N N 77
UDA P3 O17 DOUB N N 78
UDA O15 H15 SING N N 79
UDA O16 H1 SING N N 80
UDA C14 O18 DOUB N N 81
UDA C14 O19 SING N N 82
UDA O19 H19 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UDA SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(OC(OP(=O)(O)O)(C(=O)O)C)C1NC(=O)C)CO)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O"
UDA SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@H]1[C@H](O[C@H](CO)[C@@H](O)[C@@H]1O[C@@](C)(O[P](O)(O)=O)C(O)=O)O[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O"
UDA SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O[CH](CO)[CH](O)[CH]1O[C](C)(O[P](O)(O)=O)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O"
UDA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO)O)O[C@](C)(C(=O)O)OP(=O)(O)O"
UDA SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)CO)O)OC(C)(C(=O)O)OP(=O)(O)O"
UDA InChI InChI 1.03
;InChI=1S/C20H32N3O23P3/c1-7(25)21-11-15(43-20(2,18(30)31)45-47(33,34)35)13(28)8(5-24)42-17(11)44-49(38,39)46-48(36,37)40-6-9-12(27)14(29)16(41-9)23-4-3-10(26)22-19(23)32/h3-4,8-9,11-17,24,27-29H,5-6H2,1-2H3,(H,21,25)(H,30,31)(H,36,37)(H,38,39)(H,22,26,32)(H2,33,34,35)/t8-,9-,11-,12-,13-,14-,15-,16-,17-,20+/m1/s1
;
UDA InChIKey InChI 1.03 NLBIPGBVVPCESQ-BVDGEXFOSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UDA "SYSTEMATIC NAME" ACDLabs 10.04
;(2S)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}-2-(phosphonooxy)propanoic acid (non-preferred name)
;
UDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0
"(2S)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-5-hydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-2-phosphonooxy-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UDA "Create component" 2003-08-14 RCSB
UDA "Modify descriptor" 2011-06-04 RCSB
#