data_UDE # _chem_comp.id UDE _chem_comp.name "3-(3-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl)-1H-1,2,3-triazol-4-yl)methyl)ureido)benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N8 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[[1-[(2~{S},3~{S},5~{R})-2-(hydroxymethyl)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-3-yl]-1,2,3-triazol-4-yl]methyl]-3-(3-sulfamoylphenyl)urea" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-10 _chem_comp.pdbx_modified_date 2022-02-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 520.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UDE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NH6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UDE N1 N1 N 0 1 N N N -2.196 12.500 12.087 -5.400 1.216 -0.142 N1 UDE 1 UDE C7 C1 C 0 1 N N N -0.384 4.616 11.546 1.325 -1.902 -0.548 C7 UDE 2 UDE C8 C2 C 0 1 N N N -2.121 4.161 13.154 3.331 -1.017 0.515 C8 UDE 3 UDE N2 N2 N 0 1 Y N N 0.003 8.173 12.124 -2.196 -2.320 0.252 N2 UDE 4 UDE C9 C3 C 0 1 Y N N -3.761 3.617 14.904 5.356 -0.245 1.497 C9 UDE 5 UDE O1 O1 O 0 1 N N N -1.892 10.802 13.674 -5.242 -0.985 -1.056 O1 UDE 6 UDE C1 C4 C 0 1 N N N -3.287 13.166 11.554 -6.384 0.947 0.736 C1 UDE 7 UDE O5 O2 O 0 1 N N N -2.964 4.616 12.364 3.876 -1.026 -0.572 O5 UDE 8 UDE C5 C5 C 0 1 N N S -0.326 9.580 12.400 -3.599 -1.915 0.375 C5 UDE 9 UDE C6 C6 C 0 1 Y N N -0.016 6.056 11.705 -0.069 -2.310 -0.147 C6 UDE 10 UDE N3 N3 N 0 1 Y N N 1.262 7.720 12.303 -1.715 -3.474 0.555 N3 UDE 11 UDE C4 C7 C 0 1 N N N -0.040 9.952 14.940 -5.120 -3.422 -0.961 C4 UDE 12 UDE O4 O3 O 0 1 N N N -5.384 0.953 18.179 9.172 1.176 -1.277 O4 UDE 13 UDE C3 C8 C 0 1 N N S -0.978 9.691 13.781 -4.338 -2.108 -0.968 C3 UDE 14 UDE O3 O4 O 0 1 N N N -7.401 0.865 16.748 6.879 1.094 -2.269 O3 UDE 15 UDE C2 C9 C 0 1 N N R -2.284 11.037 12.324 -4.492 0.147 -0.564 C2 UDE 16 UDE N4 N4 N 0 1 Y N N 1.251 6.434 12.031 -0.449 -3.501 0.328 N4 UDE 17 UDE O6 O5 O 0 1 N N N -4.284 12.595 11.136 -6.508 -0.182 1.169 O6 UDE 18 UDE N N5 N 0 1 N N N -3.178 14.538 11.549 -7.232 1.910 1.141 N UDE 19 UDE C17 C10 C 0 1 N N N -1.084 13.189 12.534 -5.244 2.478 -0.648 C17 UDE 20 UDE C18 C11 C 0 1 N N N -0.998 14.530 12.548 -6.081 3.463 -0.259 C18 UDE 21 UDE C19 C12 C 0 1 N N N 0.191 15.274 13.121 -5.924 4.859 -0.806 C19 UDE 22 UDE C C13 C 0 1 N N N -2.118 15.292 12.029 -7.108 3.168 0.669 C UDE 23 UDE O O6 O 0 1 N N N -2.195 16.512 12.045 -7.876 4.039 1.034 O UDE 24 UDE C16 C14 C 0 1 N N N -1.362 10.198 11.450 -3.703 -0.397 0.647 C16 UDE 25 UDE O2 O7 O 0 1 N N N 1.247 10.424 14.549 -5.760 -3.602 -2.226 O2 UDE 26 UDE C15 C15 C 0 1 Y N N -0.813 7.170 11.737 -1.185 -1.545 -0.205 C15 UDE 27 UDE N5 N6 N 0 1 N N N -0.820 4.120 12.843 2.056 -1.435 0.633 N5 UDE 28 UDE N6 N7 N 0 1 N N N -2.444 3.706 14.410 4.003 -0.588 1.601 N6 UDE 29 UDE C14 C16 C 0 1 Y N N -4.139 2.438 15.550 5.835 0.354 0.339 C14 UDE 30 UDE C13 C17 C 0 1 Y N N -5.445 2.323 16.026 7.170 0.691 0.239 C13 UDE 31 UDE S S1 S 0 1 N N N -5.971 0.852 16.866 7.779 1.452 -1.229 S UDE 32 UDE N7 N8 N 0 1 N N N -5.408 -0.443 16.110 7.634 3.090 -1.028 N7 UDE 33 UDE C12 C18 C 0 1 Y N N -6.357 3.369 15.845 8.031 0.433 1.291 C12 UDE 34 UDE C11 C19 C 0 1 Y N N -5.961 4.527 15.215 7.557 -0.164 2.444 C11 UDE 35 UDE C10 C20 C 0 1 Y N N -4.671 4.656 14.734 6.222 -0.498 2.553 C10 UDE 36 UDE H1 H1 H 0 1 N N N -1.200 4.517 10.815 1.843 -2.757 -0.982 H1 UDE 37 UDE H2 H2 H 0 1 N N N 0.489 4.043 11.201 1.271 -1.098 -1.283 H2 UDE 38 UDE H3 H3 H 0 1 N N N 0.589 10.191 12.382 -4.091 -2.481 1.166 H3 UDE 39 UDE H4 H4 H 0 1 N N N -0.501 10.706 15.595 -4.436 -4.251 -0.780 H4 UDE 40 UDE H5 H5 H 0 1 N N N 0.091 9.013 15.498 -5.873 -3.394 -0.174 H5 UDE 41 UDE H6 H6 H 0 1 N N N -1.539 8.766 13.980 -3.629 -2.090 -1.796 H6 UDE 42 UDE H7 H7 H 0 1 N N N -3.321 10.705 12.167 -3.809 0.512 -1.332 H7 UDE 43 UDE H8 H8 H 0 1 N N N -3.945 15.045 11.157 -7.936 1.699 1.774 H8 UDE 44 UDE H9 H9 H 0 1 N N N -0.239 12.619 12.891 -4.454 2.685 -1.356 H9 UDE 45 UDE H10 H10 H 0 1 N N N 0.944 14.551 13.467 -6.520 4.963 -1.712 H10 UDE 46 UDE H11 H11 H 0 1 N N N 0.630 15.917 12.344 -6.264 5.580 -0.063 H11 UDE 47 UDE H12 H12 H 0 1 N N N -0.138 15.894 13.968 -4.875 5.043 -1.037 H12 UDE 48 UDE H13 H13 H 0 1 N N N -1.933 9.408 10.940 -4.247 -0.211 1.572 H13 UDE 49 UDE H14 H14 H 0 1 N N N -0.864 10.832 10.701 -2.710 0.052 0.689 H14 UDE 50 UDE H15 H15 H 0 1 N N N 1.781 10.566 15.322 -6.276 -4.417 -2.294 H15 UDE 51 UDE H16 H16 H 0 1 N N N -1.866 7.232 11.503 -1.253 -0.521 -0.541 H16 UDE 52 UDE H17 H17 H 0 1 N N N -0.155 3.753 13.494 1.621 -1.428 1.500 H17 UDE 53 UDE H18 H18 H 0 1 N N N -1.698 3.420 15.011 3.550 -0.517 2.455 H18 UDE 54 UDE H19 H19 H 0 1 N N N -3.433 1.631 15.679 5.164 0.556 -0.482 H19 UDE 55 UDE H20 H20 H 0 1 N N N -5.709 -1.267 16.590 7.087 3.607 -1.641 H20 UDE 56 UDE H21 H21 H 0 1 N N N -5.755 -0.458 15.172 8.095 3.532 -0.299 H21 UDE 57 UDE H22 H22 H 0 1 N N N -7.372 3.268 16.200 9.075 0.697 1.210 H22 UDE 58 UDE H23 H23 H 0 1 N N N -6.662 5.340 15.096 8.232 -0.365 3.263 H23 UDE 59 UDE H24 H24 H 0 1 N N N -4.370 5.561 14.227 5.852 -0.964 3.454 H24 UDE 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UDE O6 C1 DOUB N N 1 UDE C16 C2 SING N N 2 UDE C16 C5 SING N N 3 UDE C7 C6 SING N N 4 UDE C7 N5 SING N N 5 UDE N C1 SING N N 6 UDE N C SING N N 7 UDE C1 N1 SING N N 8 UDE C6 C15 DOUB Y N 9 UDE C6 N4 SING Y N 10 UDE C15 N2 SING Y N 11 UDE C O DOUB N N 12 UDE C C18 SING N N 13 UDE N4 N3 DOUB Y N 14 UDE N1 C2 SING N N 15 UDE N1 C17 SING N N 16 UDE N2 N3 SING Y N 17 UDE N2 C5 SING N N 18 UDE C2 O1 SING N N 19 UDE O5 C8 DOUB N N 20 UDE C5 C3 SING N N 21 UDE C17 C18 DOUB N N 22 UDE C18 C19 SING N N 23 UDE N5 C8 SING N N 24 UDE C8 N6 SING N N 25 UDE O1 C3 SING N N 26 UDE C3 C4 SING N N 27 UDE N6 C9 SING N N 28 UDE O2 C4 SING N N 29 UDE C10 C9 DOUB Y N 30 UDE C10 C11 SING Y N 31 UDE C9 C14 SING Y N 32 UDE C11 C12 DOUB Y N 33 UDE C14 C13 DOUB Y N 34 UDE C12 C13 SING Y N 35 UDE C13 S SING N N 36 UDE N7 S SING N N 37 UDE O3 S DOUB N N 38 UDE S O4 DOUB N N 39 UDE C7 H1 SING N N 40 UDE C7 H2 SING N N 41 UDE C5 H3 SING N N 42 UDE C4 H4 SING N N 43 UDE C4 H5 SING N N 44 UDE C3 H6 SING N N 45 UDE C2 H7 SING N N 46 UDE N H8 SING N N 47 UDE C17 H9 SING N N 48 UDE C19 H10 SING N N 49 UDE C19 H11 SING N N 50 UDE C19 H12 SING N N 51 UDE C16 H13 SING N N 52 UDE C16 H14 SING N N 53 UDE O2 H15 SING N N 54 UDE C15 H16 SING N N 55 UDE N5 H17 SING N N 56 UDE N6 H18 SING N N 57 UDE C14 H19 SING N N 58 UDE N7 H20 SING N N 59 UDE N7 H21 SING N N 60 UDE C12 H22 SING N N 61 UDE C11 H23 SING N N 62 UDE C10 H24 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UDE InChI InChI 1.03 "InChI=1S/C20H24N8O7S/c1-11-8-27(20(32)24-18(11)30)17-6-15(16(10-29)35-17)28-9-13(25-26-28)7-22-19(31)23-12-3-2-4-14(5-12)36(21,33)34/h2-5,8-9,15-17,29H,6-7,10H2,1H3,(H2,21,33,34)(H2,22,23,31)(H,24,30,32)/t15-,16+,17+/m0/s1" UDE InChIKey InChI 1.03 JDLXXAQKDPZINZ-GVDBMIGSSA-N UDE SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@H]2C[C@@H]([C@@H](CO)O2)n3cc(CNC(=O)Nc4cccc(c4)[S](N)(=O)=O)nn3)C(=O)NC1=O" UDE SMILES CACTVS 3.385 "CC1=CN([CH]2C[CH]([CH](CO)O2)n3cc(CNC(=O)Nc4cccc(c4)[S](N)(=O)=O)nn3)C(=O)NC1=O" UDE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)n3cc(nn3)CNC(=O)Nc4cccc(c4)S(=O)(=O)N" UDE SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)n3cc(nn3)CNC(=O)Nc4cccc(c4)S(=O)(=O)N" # _pdbx_chem_comp_identifier.comp_id UDE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[1-[(2~{S},3~{S},5~{R})-2-(hydroxymethyl)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-3-yl]-1,2,3-triazol-4-yl]methyl]-3-(3-sulfamoylphenyl)urea" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UDE _pdbx_chem_comp_synonyms.name "1-[[1-[(2~{S},3~{S},5~{R})-2-(hydroxymethyl)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-3-yl]-1,2,3-triazol-4-yl]methyl]-3-(3-sulfamoylphenyl)urea" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UDE "Create component" 2021-02-10 PDBE UDE "Initial release" 2022-02-23 RCSB ##