data_UEB # _chem_comp.id UEB _chem_comp.name "(S)-1-(2-(amino(phenyl)methyl)benzyl)-2-thioxo-1,2,3,5-tetrahydro-4H-pyrrolo[3,2-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[[2-[(~{R})-azanyl(phenyl)methyl]phenyl]methyl]-2-sulfanylidene-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-11 _chem_comp.pdbx_modified_date 2022-02-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UEB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NI1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UEB C2 C1 C 0 1 N N R -2.899 21.737 14.739 2.527 1.170 1.047 C2 UEB 1 UEB C7 C2 C 0 1 Y N N -4.991 24.581 12.294 4.595 -2.490 0.293 C7 UEB 2 UEB C8 C3 C 0 1 Y N N -3.599 24.677 12.418 3.520 -2.470 1.162 C8 UEB 3 UEB C9 C4 C 0 1 Y N N -2.918 23.749 13.216 2.851 -1.286 1.406 C9 UEB 4 UEB C10 C5 C 0 1 Y N N -3.086 21.912 16.222 1.702 1.539 -0.159 C10 UEB 5 UEB C11 C6 C 0 1 Y N N -3.179 23.203 16.762 2.225 2.380 -1.123 C11 UEB 6 UEB C12 C7 C 0 1 Y N N -3.352 23.416 18.134 1.468 2.718 -2.230 C12 UEB 7 UEB C13 C8 C 0 1 Y N N -3.429 22.323 19.002 0.189 2.215 -2.372 C13 UEB 8 UEB C14 C9 C 0 1 Y N N -3.324 21.032 18.474 -0.334 1.374 -1.408 C14 UEB 9 UEB C15 C10 C 0 1 Y N N -3.157 20.807 17.095 0.424 1.031 -0.304 C15 UEB 10 UEB C16 C11 C 0 1 N N N -3.084 19.403 16.562 -0.144 0.110 0.744 C16 UEB 11 UEB C21 C12 C 0 1 N N N -4.647 16.284 19.221 -4.000 -1.123 -0.419 C21 UEB 12 UEB C27 C13 C 0 1 Y N N -1.382 17.202 17.883 -2.757 1.501 1.673 C27 UEB 13 UEB N1 N1 N 0 1 N N N -1.487 21.670 14.409 3.501 2.236 1.318 N1 UEB 14 UEB C4 C14 C 0 1 Y N N -3.619 22.729 13.882 3.257 -0.121 0.781 C4 UEB 15 UEB C5 C15 C 0 1 Y N N -5.010 22.637 13.743 4.331 -0.141 -0.089 C5 UEB 16 UEB C6 C16 C 0 1 Y N N -5.698 23.566 12.953 5.001 -1.326 -0.333 C6 UEB 17 UEB N17 N2 N 0 1 N N N -3.634 18.391 17.437 -1.495 -0.301 0.353 N17 UEB 18 UEB C18 C17 C 0 1 N N N -5.040 18.314 17.733 -1.666 -1.357 -0.466 C18 UEB 19 UEB S19 S1 S 0 1 N N N -6.200 19.364 17.152 -0.292 -2.204 -1.037 S19 UEB 20 UEB N20 N3 N 0 1 N N N -5.423 17.275 18.612 -2.891 -1.762 -0.845 N20 UEB 21 UEB O22 O1 O 0 1 N N N -5.093 15.446 19.992 -5.102 -1.504 -0.771 O22 UEB 22 UEB C23 C18 C 0 1 Y N N -3.271 16.413 18.835 -3.870 -0.012 0.445 C23 UEB 23 UEB N24 N4 N 0 1 Y N N -2.214 15.644 19.236 -4.772 0.837 1.050 N24 UEB 24 UEB C26 C19 C 0 1 Y N N -1.056 16.111 18.666 -4.083 1.746 1.789 C26 UEB 25 UEB C28 C20 C 0 1 Y N N -2.783 17.404 18.003 -2.597 0.394 0.828 C28 UEB 26 UEB H1 H1 H 0 1 N N N -3.327 20.754 14.493 1.873 1.047 1.910 H1 UEB 27 UEB H2 H2 H 0 1 N N N -5.524 25.296 11.685 5.121 -3.415 0.106 H2 UEB 28 UEB H3 H3 H 0 1 N N N -3.057 25.457 11.904 3.204 -3.380 1.650 H3 UEB 29 UEB H4 H4 H 0 1 N N N -1.845 23.818 13.320 2.011 -1.270 2.084 H4 UEB 30 UEB H5 H5 H 0 1 N N N -3.115 24.055 16.101 3.225 2.773 -1.012 H5 UEB 31 UEB H6 H6 H 0 1 N N N -3.426 24.422 18.521 1.877 3.376 -2.983 H6 UEB 32 UEB H7 H7 H 0 1 N N N -3.567 22.473 20.063 -0.403 2.480 -3.236 H7 UEB 33 UEB H8 H8 H 0 1 N N N -3.372 20.185 19.143 -1.334 0.981 -1.519 H8 UEB 34 UEB H9 H9 H 0 1 N N N -3.636 19.369 15.611 0.491 -0.771 0.836 H9 UEB 35 UEB H10 H10 H 0 1 N N N -2.026 19.161 16.381 -0.186 0.630 1.701 H10 UEB 36 UEB H11 H11 H 0 1 N N N -0.699 17.792 17.290 -1.964 2.060 2.147 H11 UEB 37 UEB H12 H12 H 0 1 N N N -1.038 20.999 14.999 4.119 2.370 0.532 H12 UEB 38 UEB H13 H13 H 0 1 N N N -1.381 21.397 13.453 3.036 3.097 1.563 H13 UEB 39 UEB H15 H15 H 0 1 N N N -5.552 21.849 14.245 4.647 0.768 -0.577 H15 UEB 40 UEB H16 H16 H 0 1 N N N -6.771 23.501 12.852 5.840 -1.342 -1.012 H16 UEB 41 UEB H17 H17 H 0 1 N N N -6.398 17.244 18.832 -2.978 -2.526 -1.435 H17 UEB 42 UEB H18 H18 H 0 1 N N N -2.275 14.859 19.852 -5.737 0.793 0.963 H18 UEB 43 UEB H19 H19 H 0 1 N N N -0.067 15.699 18.805 -4.524 2.538 2.376 H19 UEB 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UEB C7 C8 DOUB Y N 1 UEB C7 C6 SING Y N 2 UEB C8 C9 SING Y N 3 UEB C6 C5 DOUB Y N 4 UEB C9 C4 DOUB Y N 5 UEB C5 C4 SING Y N 6 UEB C4 C2 SING N N 7 UEB N1 C2 SING N N 8 UEB C2 C10 SING N N 9 UEB C10 C11 DOUB Y N 10 UEB C10 C15 SING Y N 11 UEB C16 C15 SING N N 12 UEB C16 N17 SING N N 13 UEB C11 C12 SING Y N 14 UEB C15 C14 DOUB Y N 15 UEB S19 C18 DOUB N N 16 UEB N17 C18 SING N N 17 UEB N17 C28 SING N N 18 UEB C18 N20 SING N N 19 UEB C27 C28 SING Y N 20 UEB C27 C26 DOUB Y N 21 UEB C28 C23 DOUB Y N 22 UEB C12 C13 DOUB Y N 23 UEB C14 C13 SING Y N 24 UEB N20 C21 SING N N 25 UEB C26 N24 SING Y N 26 UEB C23 C21 SING N N 27 UEB C23 N24 SING Y N 28 UEB C21 O22 DOUB N N 29 UEB C2 H1 SING N N 30 UEB C7 H2 SING N N 31 UEB C8 H3 SING N N 32 UEB C9 H4 SING N N 33 UEB C11 H5 SING N N 34 UEB C12 H6 SING N N 35 UEB C13 H7 SING N N 36 UEB C14 H8 SING N N 37 UEB C16 H9 SING N N 38 UEB C16 H10 SING N N 39 UEB C27 H11 SING N N 40 UEB N1 H12 SING N N 41 UEB N1 H13 SING N N 42 UEB C5 H15 SING N N 43 UEB C6 H16 SING N N 44 UEB N20 H17 SING N N 45 UEB N24 H18 SING N N 46 UEB C26 H19 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UEB InChI InChI 1.03 "InChI=1S/C20H18N4OS/c21-17(13-6-2-1-3-7-13)15-9-5-4-8-14(15)12-24-16-10-11-22-18(16)19(25)23-20(24)26/h1-11,17,22H,12,21H2,(H,23,25,26)/t17-/m1/s1" UEB InChIKey InChI 1.03 JABFRGYJMKKWKF-QGZVFWFLSA-N UEB SMILES_CANONICAL CACTVS 3.385 "N[C@H](c1ccccc1)c2ccccc2CN3C(=S)NC(=O)c4[nH]ccc34" UEB SMILES CACTVS 3.385 "N[CH](c1ccccc1)c2ccccc2CN3C(=S)NC(=O)c4[nH]ccc34" UEB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@H](c2ccccc2CN3c4cc[nH]c4C(=O)NC3=S)N" UEB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(c2ccccc2CN3c4cc[nH]c4C(=O)NC3=S)N" # _pdbx_chem_comp_identifier.comp_id UEB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[2-[(~{R})-azanyl(phenyl)methyl]phenyl]methyl]-2-sulfanylidene-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UEB _pdbx_chem_comp_synonyms.name "1-[[2-[(~{R})-azanyl(phenyl)methyl]phenyl]methyl]-2-sulfanylidene-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UEB "Create component" 2021-02-11 PDBE UEB "Initial release" 2022-02-23 RCSB ##