data_UEM # _chem_comp.id UEM _chem_comp.name "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-naphthalen-1-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-02 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.599 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UEM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CER _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UEM C15 C1 C 0 1 N N N 23.181 21.614 48.436 3.337 -0.132 0.204 C15 UEM 1 UEM C17 C2 C 0 1 Y N N 23.081 22.825 50.767 4.695 -2.349 0.026 C17 UEM 2 UEM N N1 N 0 1 N N N 18.728 13.285 41.645 -7.945 -1.827 -0.747 N UEM 3 UEM CA C3 C 0 1 N N S 20.076 13.251 41.014 -6.898 -2.440 0.081 CA UEM 4 UEM C C4 C 0 1 N N N 20.075 12.244 39.858 -7.537 -3.257 1.175 C UEM 5 UEM O O1 O 0 1 N N N 19.024 12.136 39.191 -8.685 -3.050 1.491 O UEM 6 UEM CB C5 C 0 1 N N N 21.148 12.893 42.046 -6.033 -1.342 0.704 CB UEM 7 UEM OXT O2 O 0 1 N N N 21.134 11.597 39.674 -6.831 -4.214 1.797 OXT UEM 8 UEM C10 C6 C 0 1 Y N N 21.807 22.615 43.538 3.365 4.962 1.452 C10 UEM 9 UEM C12 C7 C 0 1 Y N N 22.662 21.050 44.856 2.002 3.277 0.679 C12 UEM 10 UEM C13 C8 C 0 1 Y N N 22.588 21.891 45.984 3.091 2.393 0.754 C13 UEM 11 UEM C14 C9 C 0 1 Y N N 23.099 21.127 47.093 2.590 1.086 0.302 C14 UEM 12 UEM C16 C10 C 0 1 N N N 23.188 22.108 49.528 3.948 -1.131 0.124 C16 UEM 13 UEM C18 C11 C 0 1 Y N N 22.066 22.528 51.647 6.039 -2.389 0.381 C18 UEM 14 UEM C19 C12 C 0 1 Y N N 21.913 23.243 52.823 6.758 -3.572 0.290 C19 UEM 15 UEM C20 C13 C 0 1 Y N N 22.767 24.261 53.142 6.186 -4.729 -0.144 C20 UEM 16 UEM C21 C14 C 0 1 Y N N 23.829 24.612 52.275 4.832 -4.763 -0.519 C21 UEM 17 UEM C22 C15 C 0 1 Y N N 23.997 23.885 51.062 4.058 -3.579 -0.443 C22 UEM 18 UEM C23 C16 C 0 1 Y N N 25.064 24.246 50.203 2.710 -3.609 -0.816 C23 UEM 19 UEM C24 C17 C 0 1 Y N N 25.913 25.267 50.529 2.156 -4.777 -1.249 C24 UEM 20 UEM C25 C18 C 0 1 Y N N 25.748 25.973 51.709 2.914 -5.943 -1.325 C25 UEM 21 UEM C26 C19 C 0 1 Y N N 24.733 25.661 52.570 4.228 -5.950 -0.969 C26 UEM 22 UEM C27 C20 C 0 1 Y N N 23.448 19.895 46.597 1.275 1.265 -0.005 C27 UEM 23 UEM C29 C21 C 0 1 N N R 23.392 18.691 44.364 -0.411 3.122 -0.002 C29 UEM 24 UEM C30 C22 C 0 1 N N R 24.806 18.133 44.347 -0.524 3.700 -1.431 C30 UEM 25 UEM C32 C23 C 0 1 N N S 24.563 16.715 43.809 -1.966 3.354 -1.863 C32 UEM 26 UEM C34 C24 C 0 1 N N S 23.115 16.414 44.215 -2.554 2.608 -0.644 C34 UEM 27 UEM C36 C25 C 0 1 N N N 22.828 15.219 45.105 -3.469 1.472 -1.106 C36 UEM 28 UEM C38 C26 C 0 1 N N N 21.236 13.871 43.208 -5.287 -0.593 -0.401 C38 UEM 29 UEM C8 C27 C 0 1 Y N N 22.061 23.188 45.761 4.326 2.880 1.202 C8 UEM 30 UEM N11 N2 N 0 1 Y N N 22.284 21.372 43.614 2.188 4.547 1.038 N11 UEM 31 UEM N28 N3 N 0 1 Y N N 23.185 19.838 45.245 0.926 2.566 0.219 N28 UEM 32 UEM N7 N4 N 0 1 N N N 21.934 24.108 46.721 5.426 2.046 1.292 N7 UEM 33 UEM N9 N5 N 0 1 Y N N 21.675 23.520 44.510 4.414 4.164 1.538 N9 UEM 34 UEM O31 O3 O 0 1 N N N 25.630 18.890 43.466 -0.329 5.115 -1.415 O31 UEM 35 UEM O33 O4 O 0 1 N N N 24.720 16.651 42.395 -2.710 4.545 -2.127 O33 UEM 36 UEM O35 O5 O 0 1 N N N 22.584 17.622 44.805 -1.406 2.077 0.053 O35 UEM 37 UEM S37 S1 S 0 1 N N N 22.602 13.580 44.364 -4.261 0.708 0.337 S37 UEM 38 UEM H1 H1 H 0 1 N N N 18.729 13.942 42.399 -8.536 -1.223 -0.195 H1 UEM 39 UEM H2 H2 H 0 1 N N N 18.048 13.560 40.965 -7.543 -1.326 -1.526 H2 UEM 40 UEM H4 H4 H 0 1 N N N 20.305 14.247 40.606 -6.276 -3.085 -0.539 H4 UEM 41 UEM H5 H5 H 0 1 N N N 20.921 11.895 42.450 -6.668 -0.646 1.251 H5 UEM 42 UEM H6 H6 H 0 1 N N N 22.124 12.870 41.538 -5.313 -1.792 1.388 H6 UEM 43 UEM H7 H7 H 0 1 N N N 21.019 11.003 38.942 -7.284 -4.711 2.492 H7 UEM 44 UEM H8 H8 H 0 1 N N N 21.484 22.932 42.557 3.480 6.000 1.730 H8 UEM 45 UEM H9 H9 H 0 1 N N N 21.379 21.727 51.418 6.528 -1.491 0.730 H9 UEM 46 UEM H10 H10 H 0 1 N N N 21.108 22.993 53.497 7.800 -3.576 0.572 H10 UEM 47 UEM H11 H11 H 0 1 N N N 22.630 24.804 54.066 6.779 -5.630 -0.202 H11 UEM 48 UEM H12 H12 H 0 1 N N N 25.209 23.707 49.278 2.112 -2.711 -0.762 H12 UEM 49 UEM H13 H13 H 0 1 N N N 26.720 25.525 49.860 1.115 -4.798 -1.536 H13 UEM 50 UEM H14 H14 H 0 1 N N N 26.427 26.777 51.951 2.452 -6.856 -1.671 H14 UEM 51 UEM H15 H15 H 0 1 N N N 24.619 26.221 53.486 4.804 -6.861 -1.034 H15 UEM 52 UEM H16 H16 H 0 1 N N N 23.867 19.089 47.181 0.611 0.495 -0.370 H16 UEM 53 UEM H17 H17 H 0 1 N N N 23.116 18.970 43.336 -0.628 3.892 0.738 H17 UEM 54 UEM H18 H18 H 0 1 N N N 25.219 18.091 45.366 0.198 3.223 -2.093 H18 UEM 55 UEM H19 H19 H 0 1 N N N 25.240 16.010 44.314 -1.957 2.706 -2.739 H19 UEM 56 UEM H20 H20 H 0 1 N N N 22.564 16.241 43.278 -3.101 3.300 -0.004 H20 UEM 57 UEM H21 H21 H 0 1 N N N 23.669 15.137 45.810 -4.235 1.870 -1.772 H21 UEM 58 UEM H22 H22 H 0 1 N N N 21.906 15.448 45.659 -2.880 0.723 -1.636 H22 UEM 59 UEM H23 H23 H 0 1 N N N 21.352 14.883 42.792 -4.652 -1.289 -0.949 H23 UEM 60 UEM H24 H24 H 0 1 N N N 20.294 13.813 43.773 -6.007 -0.143 -1.085 H24 UEM 61 UEM H25 H25 H 0 1 N N N 21.550 24.945 46.332 5.349 1.112 1.043 H25 UEM 62 UEM H26 H26 H 0 1 N N N 21.326 23.762 47.435 6.276 2.396 1.604 H26 UEM 63 UEM H27 H27 H 0 1 N N N 25.762 19.760 43.824 -0.389 5.530 -2.286 H27 UEM 64 UEM H28 H28 H 0 1 N N N 25.623 16.840 42.167 -2.383 5.053 -2.882 H28 UEM 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UEM O C DOUB N N 1 UEM OXT C SING N N 2 UEM C CA SING N N 3 UEM CA N SING N N 4 UEM CA CB SING N N 5 UEM CB C38 SING N N 6 UEM O33 C32 SING N N 7 UEM C38 S37 SING N N 8 UEM O31 C30 SING N N 9 UEM C10 N11 DOUB Y N 10 UEM C10 N9 SING Y N 11 UEM N11 C12 SING Y N 12 UEM C32 C34 SING N N 13 UEM C32 C30 SING N N 14 UEM C34 O35 SING N N 15 UEM C34 C36 SING N N 16 UEM C30 C29 SING N N 17 UEM S37 C36 SING N N 18 UEM C29 O35 SING N N 19 UEM C29 N28 SING N N 20 UEM N9 C8 DOUB Y N 21 UEM C12 N28 SING Y N 22 UEM C12 C13 DOUB Y N 23 UEM N28 C27 SING Y N 24 UEM C8 C13 SING Y N 25 UEM C8 N7 SING N N 26 UEM C13 C14 SING Y N 27 UEM C27 C14 DOUB Y N 28 UEM C14 C15 SING N N 29 UEM C15 C16 TRIP N N 30 UEM C16 C17 SING N N 31 UEM C23 C24 DOUB Y N 32 UEM C23 C22 SING Y N 33 UEM C24 C25 SING Y N 34 UEM C17 C22 DOUB Y N 35 UEM C17 C18 SING Y N 36 UEM C22 C21 SING Y N 37 UEM C18 C19 DOUB Y N 38 UEM C25 C26 DOUB Y N 39 UEM C21 C26 SING Y N 40 UEM C21 C20 DOUB Y N 41 UEM C19 C20 SING Y N 42 UEM N H1 SING N N 43 UEM N H2 SING N N 44 UEM CA H4 SING N N 45 UEM CB H5 SING N N 46 UEM CB H6 SING N N 47 UEM OXT H7 SING N N 48 UEM C10 H8 SING N N 49 UEM C18 H9 SING N N 50 UEM C19 H10 SING N N 51 UEM C20 H11 SING N N 52 UEM C23 H12 SING N N 53 UEM C24 H13 SING N N 54 UEM C25 H14 SING N N 55 UEM C26 H15 SING N N 56 UEM C27 H16 SING N N 57 UEM C29 H17 SING N N 58 UEM C30 H18 SING N N 59 UEM C32 H19 SING N N 60 UEM C34 H20 SING N N 61 UEM C36 H21 SING N N 62 UEM C36 H22 SING N N 63 UEM C38 H23 SING N N 64 UEM C38 H24 SING N N 65 UEM N7 H25 SING N N 66 UEM N7 H26 SING N N 67 UEM O31 H27 SING N N 68 UEM O33 H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UEM InChI InChI 1.06 "InChI=1S/C27H27N5O5S/c28-19(27(35)36)10-11-38-13-20-22(33)23(34)26(37-20)32-12-17(21-24(29)30-14-31-25(21)32)9-8-16-6-3-5-15-4-1-2-7-18(15)16/h1-7,12,14,19-20,22-23,26,33-34H,10-11,13,28H2,(H,35,36)(H2,29,30,31)/t19-,20+,22+,23+,26+/m0/s1" UEM InChIKey InChI 1.06 DUHQEPMMBOHBMU-CIPJCTFPSA-N UEM SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(C#Cc3cccc4ccccc34)c5c(N)ncnc25)C(O)=O" UEM SMILES CACTVS 3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(C#Cc3cccc4ccccc34)c5c(N)ncnc25)C(O)=O" UEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2C#Cc3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CSCC[C@@H](C(=O)O)N)O)O" UEM SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2C#Cc3cn(c4c3c(ncn4)N)C5C(C(C(O5)CSCCC(C(=O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id UEM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-naphthalen-1-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UEM "Create component" 2023-02-02 PDBE UEM "Initial release" 2023-04-05 RCSB #