data_UF9 # _chem_comp.id UF9 _chem_comp.name "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-phenylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-03 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.540 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UF9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CEQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UF9 C12 C1 C 0 1 Y N N 22.452 21.112 45.081 2.691 -2.327 -0.735 C12 UF9 1 UF9 C14 C2 C 0 1 Y N N 22.905 21.269 47.307 2.950 -0.116 -0.158 C14 UF9 2 UF9 N N1 N 0 1 N N N 18.977 12.918 41.705 -7.908 1.156 0.866 N UF9 3 UF9 CA C3 C 0 1 N N S 20.414 12.842 41.303 -6.950 1.983 0.120 CA UF9 4 UF9 C C4 C 0 1 N N N 20.602 11.738 40.254 -7.686 2.794 -0.916 C UF9 5 UF9 O O1 O 0 1 N N N 21.459 10.857 40.486 -7.117 3.893 -1.436 O UF9 6 UF9 CB C5 C 0 1 N N N 21.309 12.616 42.522 -5.927 1.080 -0.572 CB UF9 7 UF9 OXT O2 O 0 1 N N N 19.877 11.804 39.231 -8.787 2.454 -1.278 OXT UF9 8 UF9 C10 C6 C 0 1 Y N N 21.561 22.617 43.715 4.295 -3.726 -1.611 C10 UF9 9 UF9 C13 C7 C 0 1 Y N N 22.377 21.989 46.174 3.641 -1.293 -0.707 C13 UF9 10 UF9 C15 C8 C 0 1 N N N 22.949 21.798 48.635 3.510 1.183 0.061 C15 UF9 11 UF9 C16 C9 C 0 1 N N N 22.930 22.329 49.706 3.970 2.249 0.241 C16 UF9 12 UF9 C17 C10 C 0 1 Y N N 22.870 23.060 50.937 4.530 3.548 0.460 C17 UF9 13 UF9 C18 C11 C 0 1 Y N N 21.682 23.122 51.660 5.867 3.800 0.138 C18 UF9 14 UF9 C19 C12 C 0 1 Y N N 21.611 23.883 52.815 6.399 5.054 0.351 C19 UF9 15 UF9 C20 C13 C 0 1 Y N N 22.716 24.583 53.258 5.614 6.062 0.884 C20 UF9 16 UF9 C21 C14 C 0 1 Y N N 23.898 24.524 52.546 4.290 5.819 1.206 C21 UF9 17 UF9 C22 C15 C 0 1 Y N N 23.981 23.767 51.390 3.742 4.572 0.992 C22 UF9 18 UF9 C23 C16 C 0 1 Y N N 23.267 20.029 46.851 1.672 -0.507 0.099 C23 UF9 19 UF9 C25 C17 C 0 1 N N R 23.160 18.731 44.680 0.272 -2.580 -0.105 C25 UF9 20 UF9 C26 C18 C 0 1 N N R 24.560 18.138 44.642 0.225 -3.292 1.265 C26 UF9 21 UF9 C28 C19 C 0 1 N N S 24.262 16.709 44.166 -1.258 -3.194 1.688 C28 UF9 22 UF9 C30 C20 C 0 1 N N S 22.800 16.483 44.571 -1.931 -2.436 0.523 C30 UF9 23 UF9 C32 C21 C 0 1 N N N 22.595 15.302 45.499 -3.007 -1.487 1.057 C32 UF9 24 UF9 C34 C22 C 0 1 N N N 21.642 13.897 43.272 -5.095 0.350 0.484 C34 UF9 25 UF9 C8 C23 C 0 1 Y N N 21.830 23.269 45.916 4.939 -1.557 -1.162 C8 UF9 26 UF9 N11 N2 N 0 1 Y N N 22.055 21.382 43.830 3.065 -3.522 -1.191 N11 UF9 27 UF9 N24 N3 N 0 1 Y N N 22.994 19.917 45.503 1.517 -1.821 -0.243 N24 UF9 28 UF9 N7 N4 N 0 1 N N N 21.672 24.209 46.859 5.908 -0.569 -1.153 N7 UF9 29 UF9 N9 N5 N 0 1 Y N N 21.428 23.554 44.658 5.217 -2.780 -1.604 N9 UF9 30 UF9 O27 O3 O 0 1 N N N 25.372 18.821 43.692 0.623 -4.658 1.134 O27 UF9 31 UF9 O29 O4 O 0 1 N N N 24.393 16.598 42.755 -1.824 -4.499 1.830 O29 UF9 32 UF9 O31 O5 O 0 1 N N N 22.349 17.701 45.196 -0.863 -1.687 -0.096 O31 UF9 33 UF9 S33 S1 S 0 1 N N N 22.763 13.698 44.680 -3.881 -0.720 -0.336 S33 UF9 34 UF9 H1 H1 H 0 1 N N N 18.859 13.638 42.388 -8.555 1.731 1.384 H1 UF9 35 UF9 H2 H2 H 0 1 N N N 18.417 13.125 40.903 -8.398 0.525 0.249 H2 UF9 36 UF9 H4 H4 H 0 1 N N N 20.699 13.800 40.843 -6.436 2.654 0.808 H4 UF9 37 UF9 H5 H5 H 0 1 N N N 21.481 10.238 39.766 -7.628 4.380 -2.097 H5 UF9 38 UF9 H6 H6 H 0 1 N N N 20.793 11.932 43.212 -6.447 0.351 -1.192 H6 UF9 39 UF9 H7 H7 H 0 1 N N N 22.249 12.155 42.184 -5.270 1.687 -1.196 H7 UF9 40 UF9 H8 H8 H 0 1 N N N 21.224 22.896 42.728 4.562 -4.708 -1.973 H8 UF9 41 UF9 H9 H9 H 0 1 N N N 20.815 22.576 51.320 6.481 3.014 -0.277 H9 UF9 42 UF9 H10 H10 H 0 1 N N N 20.687 23.929 53.372 7.432 5.250 0.103 H10 UF9 43 UF9 H11 H11 H 0 1 N N N 22.656 25.175 54.159 6.036 7.042 1.049 H11 UF9 44 UF9 H12 H12 H 0 1 N N N 24.762 25.071 52.893 3.683 6.610 1.622 H12 UF9 45 UF9 H13 H13 H 0 1 N N N 24.909 23.725 50.839 2.707 4.386 1.240 H13 UF9 46 UF9 H14 H14 H 0 1 N N N 23.703 19.251 47.459 0.898 0.124 0.511 H14 UF9 47 UF9 H15 H15 H 0 1 N N N 22.856 18.962 43.649 0.179 -3.305 -0.914 H15 UF9 48 UF9 H16 H16 H 0 1 N N N 25.009 18.127 45.646 0.862 -2.777 1.985 H16 UF9 49 UF9 H17 H17 H 0 1 N N N 24.913 15.995 44.692 -1.354 -2.632 2.617 H17 UF9 50 UF9 H18 H18 H 0 1 N N N 22.216 16.307 43.655 -2.364 -3.139 -0.188 H18 UF9 51 UF9 H19 H19 H 0 1 N N N 23.341 15.360 46.306 -3.715 -2.048 1.667 H19 UF9 52 UF9 H20 H20 H 0 1 N N N 21.585 15.369 45.928 -2.539 -0.712 1.663 H20 UF9 53 UF9 H21 H21 H 0 1 N N N 22.109 14.595 42.562 -4.575 1.079 1.105 H21 UF9 54 UF9 H22 H22 H 0 1 N N N 20.701 14.327 43.645 -5.751 -0.256 1.109 H22 UF9 55 UF9 H23 H23 H 0 1 N N N 21.255 25.022 46.453 5.693 0.319 -0.828 H23 UF9 56 UF9 H24 H24 H 0 1 N N N 21.080 23.857 47.584 6.803 -0.765 -1.471 H24 UF9 57 UF9 H25 H25 H 0 1 N N N 25.547 19.702 44.000 0.612 -5.152 1.965 H25 UF9 58 UF9 H26 H26 H 0 1 N N N 25.300 16.739 42.509 -1.438 -5.019 2.548 H26 UF9 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UF9 OXT C DOUB N N 1 UF9 C O SING N N 2 UF9 C CA SING N N 3 UF9 CA N SING N N 4 UF9 CA CB SING N N 5 UF9 CB C34 SING N N 6 UF9 O29 C28 SING N N 7 UF9 C34 S33 SING N N 8 UF9 O27 C26 SING N N 9 UF9 C10 N11 DOUB Y N 10 UF9 C10 N9 SING Y N 11 UF9 N11 C12 SING Y N 12 UF9 C28 C30 SING N N 13 UF9 C28 C26 SING N N 14 UF9 C30 O31 SING N N 15 UF9 C30 C32 SING N N 16 UF9 C26 C25 SING N N 17 UF9 N9 C8 DOUB Y N 18 UF9 S33 C32 SING N N 19 UF9 C25 O31 SING N N 20 UF9 C25 N24 SING N N 21 UF9 C12 N24 SING Y N 22 UF9 C12 C13 DOUB Y N 23 UF9 N24 C23 SING Y N 24 UF9 C8 C13 SING Y N 25 UF9 C8 N7 SING N N 26 UF9 C13 C14 SING Y N 27 UF9 C23 C14 DOUB Y N 28 UF9 C14 C15 SING N N 29 UF9 C15 C16 TRIP N N 30 UF9 C16 C17 SING N N 31 UF9 C17 C22 DOUB Y N 32 UF9 C17 C18 SING Y N 33 UF9 C22 C21 SING Y N 34 UF9 C18 C19 DOUB Y N 35 UF9 C21 C20 DOUB Y N 36 UF9 C19 C20 SING Y N 37 UF9 N H1 SING N N 38 UF9 N H2 SING N N 39 UF9 CA H4 SING N N 40 UF9 O H5 SING N N 41 UF9 CB H6 SING N N 42 UF9 CB H7 SING N N 43 UF9 C10 H8 SING N N 44 UF9 C18 H9 SING N N 45 UF9 C19 H10 SING N N 46 UF9 C20 H11 SING N N 47 UF9 C21 H12 SING N N 48 UF9 C22 H13 SING N N 49 UF9 C23 H14 SING N N 50 UF9 C25 H15 SING N N 51 UF9 C26 H16 SING N N 52 UF9 C28 H17 SING N N 53 UF9 C30 H18 SING N N 54 UF9 C32 H19 SING N N 55 UF9 C32 H20 SING N N 56 UF9 C34 H21 SING N N 57 UF9 C34 H22 SING N N 58 UF9 N7 H23 SING N N 59 UF9 N7 H24 SING N N 60 UF9 O27 H25 SING N N 61 UF9 O29 H26 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UF9 InChI InChI 1.06 "InChI=1S/C23H25N5O5S/c24-15(23(31)32)8-9-34-11-16-18(29)19(30)22(33-16)28-10-14(7-6-13-4-2-1-3-5-13)17-20(25)26-12-27-21(17)28/h1-5,10,12,15-16,18-19,22,29-30H,8-9,11,24H2,(H,31,32)(H2,25,26,27)/t15-,16+,18+,19+,22+/m0/s1" UF9 InChIKey InChI 1.06 ARBIWWNISHROOL-XVZIYINBSA-N UF9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(C#Cc3ccccc3)c4c(N)ncnc24)C(O)=O" UF9 SMILES CACTVS 3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(C#Cc3ccccc3)c4c(N)ncnc24)C(O)=O" UF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C#Cc2cn(c3c2c(ncn3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)CSCC[C@@H](C(=O)O)N)O)O" UF9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C#Cc2cn(c3c2c(ncn3)N)C4C(C(C(O4)CSCCC(C(=O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id UF9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-phenylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UF9 "Create component" 2023-02-03 PDBE UF9 "Initial release" 2023-04-05 RCSB #