data_UFM # _chem_comp.id UFM _chem_comp.name "URIDINE-5'-DIPHOSPHATE-MANNOSE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N2 O17 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UFM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UDC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UFM N1 N1 N 0 1 N N N 15.673 15.256 39.743 0.933 -0.609 5.772 N1 UFM 1 UFM C2 C2 C 0 1 N N N 15.368 16.548 40.185 1.579 0.487 5.338 C2 UFM 2 UFM N3 N3 N 0 1 N N N 16.493 17.321 40.423 2.851 0.731 5.706 N3 UFM 3 UFM C4 C4 C 0 1 N N N 17.818 16.942 40.244 3.503 -0.130 6.512 C4 UFM 4 UFM C5 C5 C 0 1 N N N 18.023 15.600 39.802 2.836 -1.291 6.971 C5 UFM 5 UFM C6 C6 C 0 1 N N N 16.975 14.818 39.539 1.559 -1.509 6.591 C6 UFM 6 UFM O2 O2 O 0 1 N N N 14.191 16.914 40.336 1.004 1.273 4.611 O2 UFM 7 UFM O4 O4 O 0 1 N N N 18.676 17.786 40.449 4.655 0.087 6.841 O4 UFM 8 UFM C1D C1* C 0 1 N N R 14.553 14.327 39.524 -0.452 -0.846 5.358 C1D UFM 9 UFM C2D C2* C 0 1 N N R 14.355 13.809 38.079 -1.349 0.361 5.729 C2D UFM 10 UFM O2D O2* O 0 1 N N N 13.426 14.698 37.427 -1.832 0.246 7.069 O2D UFM 11 UFM C3D C3* C 0 1 N N S 13.685 12.402 38.281 -2.511 0.228 4.709 C3D UFM 12 UFM C4D C4* C 0 1 N N R 14.315 11.902 39.557 -1.919 -0.636 3.579 C4D UFM 13 UFM O4D O4* O 0 1 N N N 14.684 13.124 40.282 -0.549 -0.910 3.919 O4D UFM 14 UFM O3D O3* O 0 1 N N N 12.252 12.459 38.491 -3.632 -0.423 5.311 O3D UFM 15 UFM C5D C5* C 0 1 N N N 15.507 10.987 39.475 -1.983 0.125 2.254 C5D UFM 16 UFM O5D O5* O 0 1 N N N 16.372 11.731 38.601 -1.425 -0.680 1.214 O5D UFM 17 UFM PA PA P 0 1 N N R 17.773 11.073 38.219 -1.525 0.178 -0.144 PA UFM 18 UFM O1A O1A O 0 1 N N N 18.497 12.003 37.299 -2.944 0.492 -0.426 O1A UFM 19 UFM O2A O2A O 0 1 N N N 18.593 10.686 39.386 -0.696 1.548 0.024 O2A UFM 20 UFM O3A O3A O 0 1 N N N 17.476 9.673 37.486 -0.911 -0.673 -1.364 O3A UFM 21 UFM PB PB P 0 1 N N S 16.487 9.306 36.304 -1.043 0.240 -2.683 PB UFM 22 UFM O1B O1B O 0 1 N N N 15.383 8.510 36.863 -2.469 0.553 -2.926 O1B UFM 23 UFM O2B O2B O 0 1 N N N 16.063 10.559 35.575 -0.221 1.608 -2.471 O2B UFM 24 UFM O3B O3B O 0 1 N N N 17.371 8.486 35.363 -0.445 -0.554 -3.949 O3B UFM 25 UFM "C1'" "C1'" C 0 1 N N R 17.608 7.108 35.555 -0.590 0.303 -5.082 "C1'" UFM 26 UFM "C2'" "C2'" C 0 1 N N S 18.906 6.951 36.337 -0.777 -0.545 -6.341 "C2'" UFM 27 UFM "C3'" "C3'" C 0 1 N N S 20.112 7.593 35.631 0.438 -1.464 -6.509 "C3'" UFM 28 UFM "C4'" "C4'" C 0 1 N N S 20.276 6.925 34.244 1.707 -0.605 -6.483 "C4'" UFM 29 UFM "C5'" "C5'" C 0 1 N N R 18.968 7.112 33.484 1.707 0.246 -5.212 "C5'" UFM 30 UFM "C6'" "C6'" C 0 1 N N N 19.028 6.411 32.107 2.988 1.081 -5.159 "C6'" UFM 31 UFM "O2'" "O2'" O 0 1 N N N 19.137 5.544 36.516 -0.893 0.309 -7.481 "O2'" UFM 32 UFM "O3'" "O3'" O 0 1 N N N 21.293 7.332 36.409 0.348 -2.155 -7.756 "O3'" UFM 33 UFM "O4'" "O4'" O 0 1 N N N 21.327 7.551 33.522 2.858 -1.453 -6.490 "O4'" UFM 34 UFM "O5'" "O5'" O 0 1 N N N 17.830 6.530 34.220 0.575 1.114 -5.214 "O5'" UFM 35 UFM "O6'" "O6'" O 0 1 N N N 17.779 6.690 31.389 2.991 1.875 -3.971 "O6'" UFM 36 UFM HN3 HN3 H 0 1 N N N 16.328 18.267 40.765 3.301 1.529 5.387 HN3 UFM 37 UFM H5 H5 H 0 1 N N N 19.021 15.153 39.659 3.342 -1.993 7.618 H5 UFM 38 UFM H6 H6 H 0 1 N N N 17.185 13.806 39.151 1.034 -2.389 6.932 H6 UFM 39 UFM H1D H1* H 0 1 N N N 13.695 14.972 39.824 -0.835 -1.761 5.810 H1D UFM 40 UFM H2D H2* H 0 1 N N N 15.290 13.753 37.474 -0.814 1.300 5.590 H2D UFM 41 UFM "HO2'" *HO2 H 0 0 N N N 13.304 14.380 36.540 -2.381 1.024 7.236 "HO2'" UFM 42 UFM H3D H3* H 0 1 N N N 13.836 11.768 37.375 -2.799 1.207 4.329 H3D UFM 43 UFM H4D H4* H 0 1 N N N 13.565 11.235 40.044 -2.474 -1.570 3.497 H4D UFM 44 UFM "HO3'" *HO3 H 0 0 N N N 11.847 11.608 38.613 -3.919 0.136 6.046 "HO3'" UFM 45 UFM "H5'1" 1H5* H 0 0 N N N 15.953 10.695 40.454 -1.415 1.052 2.339 "H5'1" UFM 46 UFM "H5'2" 2H5* H 0 0 N N N 15.286 9.942 39.152 -3.022 0.356 2.017 "H5'2" UFM 47 UFM HOA2 2HOA H 0 0 N N N 19.427 10.293 39.158 0.220 1.299 0.206 HOA2 UFM 48 UFM HOB2 2HOB H 0 0 N N N 15.470 10.338 34.866 0.699 1.360 -2.316 HOB2 UFM 49 UFM "H1'" "H1'" H 0 1 N N N 16.761 6.620 36.092 -1.462 0.943 -4.943 "H1'" UFM 50 UFM "H2'" "H2'" H 0 1 N N N 18.799 7.479 37.313 -1.679 -1.148 -6.244 "H2'" UFM 51 UFM "H3'" "H3'" H 0 1 N N N 19.959 8.691 35.519 0.466 -2.185 -5.692 "H3'" UFM 52 UFM "H4'" "H4'" H 0 1 N N N 20.519 5.843 34.364 1.727 0.042 -7.359 "H4'" UFM 53 UFM "H5'" "H5'" H 0 1 N N N 18.826 8.211 33.362 1.663 -0.404 -4.339 "H5'" UFM 54 UFM "H6'1" "1H6'" H 0 0 N N N 19.932 6.696 31.520 3.034 1.733 -6.032 "H6'1" UFM 55 UFM "H6'2" "2H6'" H 0 0 N N N 19.239 5.319 32.191 3.854 0.419 -5.155 "H6'2" UFM 56 UFM HO2A "'HO2" H 0 0 N N N 19.946 5.446 37.003 -1.664 0.872 -7.330 HO2A UFM 57 UFM HO3A "'HO3" H 0 0 N N N 22.038 7.728 35.972 -0.469 -2.670 -7.732 HO3A UFM 58 UFM "HO4'" "'HO4" H 0 0 N N N 21.427 7.141 32.670 2.815 -1.976 -7.301 "HO4'" UFM 59 UFM "HO6'" "'HO6" H 0 0 N N N 17.815 6.259 30.543 3.813 2.385 -3.977 "HO6'" UFM 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UFM N1 C2 SING N N 1 UFM N1 C6 SING N N 2 UFM N1 C1D SING N N 3 UFM C2 N3 SING N N 4 UFM C2 O2 DOUB N N 5 UFM N3 C4 SING N N 6 UFM N3 HN3 SING N N 7 UFM C4 C5 SING N N 8 UFM C4 O4 DOUB N N 9 UFM C5 C6 DOUB N N 10 UFM C5 H5 SING N N 11 UFM C6 H6 SING N N 12 UFM C1D C2D SING N N 13 UFM C1D O4D SING N N 14 UFM C1D H1D SING N N 15 UFM C2D O2D SING N N 16 UFM C2D C3D SING N N 17 UFM C2D H2D SING N N 18 UFM O2D "HO2'" SING N N 19 UFM C3D C4D SING N N 20 UFM C3D O3D SING N N 21 UFM C3D H3D SING N N 22 UFM C4D O4D SING N N 23 UFM C4D C5D SING N N 24 UFM C4D H4D SING N N 25 UFM O3D "HO3'" SING N N 26 UFM C5D O5D SING N N 27 UFM C5D "H5'1" SING N N 28 UFM C5D "H5'2" SING N N 29 UFM O5D PA SING N N 30 UFM PA O1A DOUB N N 31 UFM PA O2A SING N N 32 UFM PA O3A SING N N 33 UFM O2A HOA2 SING N N 34 UFM O3A PB SING N N 35 UFM PB O1B DOUB N N 36 UFM PB O2B SING N N 37 UFM PB O3B SING N N 38 UFM O2B HOB2 SING N N 39 UFM O3B "C1'" SING N N 40 UFM "C1'" "C2'" SING N N 41 UFM "C1'" "O5'" SING N N 42 UFM "C1'" "H1'" SING N N 43 UFM "C2'" "C3'" SING N N 44 UFM "C2'" "O2'" SING N N 45 UFM "C2'" "H2'" SING N N 46 UFM "C3'" "C4'" SING N N 47 UFM "C3'" "O3'" SING N N 48 UFM "C3'" "H3'" SING N N 49 UFM "C4'" "C5'" SING N N 50 UFM "C4'" "O4'" SING N N 51 UFM "C4'" "H4'" SING N N 52 UFM "C5'" "C6'" SING N N 53 UFM "C5'" "O5'" SING N N 54 UFM "C5'" "H5'" SING N N 55 UFM "C6'" "O6'" SING N N 56 UFM "C6'" "H6'1" SING N N 57 UFM "C6'" "H6'2" SING N N 58 UFM "O2'" HO2A SING N N 59 UFM "O3'" HO3A SING N N 60 UFM "O4'" "HO4'" SING N N 61 UFM "O6'" "HO6'" SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UFM SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(O)C1O)CO)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O" UFM SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H](O)[C@@H](O)[C@@H]1O" UFM SMILES CACTVS 3.341 "OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O" UFM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O" UFM SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)O)O)O)O)O" UFM InChI InChI 1.03 "InChI=1S/C15H24N2O17P2/c18-3-5-8(20)10(22)12(24)14(32-5)33-36(28,29)34-35(26,27)30-4-6-9(21)11(23)13(31-6)17-2-1-7(19)16-15(17)25/h1-2,5-6,8-14,18,20-24H,3-4H2,(H,26,27)(H,28,29)(H,16,19,25)/t5-,6-,8-,9-,10+,11-,12+,13-,14-/m1/s1" UFM InChIKey InChI 1.03 HSCJRCZFDFQWRP-NYYOCOOHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UFM "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" UFM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UFM "Create component" 1999-07-08 RCSB UFM "Modify descriptor" 2011-06-04 RCSB #