data_UFQ # _chem_comp.id UFQ _chem_comp.name "Cytosine 5'-[gamma-thio]triphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H16 N3 O13 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-13 _chem_comp.pdbx_modified_date 2021-09-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.222 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UFQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BNR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UFQ N1 N1 N 0 1 N N N -11.463 17.066 -31.497 -4.943 -0.802 -0.578 N1 UFQ 1 UFQ N3 N2 N 0 1 N N N -10.454 14.200 -34.240 -6.543 -4.333 0.691 N3 UFQ 2 UFQ C4 C1 C 0 1 N N N -10.283 16.382 -31.323 -5.742 -1.493 -1.438 C4 UFQ 3 UFQ C5 C2 C 0 1 N N R -12.044 18.143 -30.687 -4.350 0.471 -0.998 C5 UFQ 4 UFQ C6 C3 C 0 1 N N R -11.702 17.905 -29.197 -4.908 1.640 -0.146 C6 UFQ 5 UFQ C7 C4 C 0 1 N N S -11.836 19.374 -28.669 -3.778 2.692 -0.260 C7 UFQ 6 UFQ C8 C5 C 0 1 N N R -11.345 20.203 -29.930 -2.537 1.872 -0.661 C8 UFQ 7 UFQ C1 C6 C 0 1 N N N -12.314 16.810 -32.618 -4.700 -1.279 0.656 C1 UFQ 8 UFQ C2 C7 C 0 1 N N N -10.793 15.177 -33.308 -6.006 -3.143 0.259 C2 UFQ 9 UFQ C3 C8 C 0 1 N N N -9.922 15.429 -32.190 -6.284 -2.668 -1.039 C3 UFQ 10 UFQ C9 C9 C 0 1 N N N -9.916 20.731 -29.681 -1.432 2.057 0.381 C9 UFQ 11 UFQ N2 N3 N 0 1 N N N -11.945 15.790 -33.561 -5.230 -2.430 1.066 N2 UFQ 12 UFQ O1 O1 O 0 1 N N N -13.385 17.386 -32.880 -3.982 -0.646 1.413 O1 UFQ 13 UFQ O10 O2 O 0 1 N N N -10.190 23.468 -32.309 4.290 0.556 1.471 O10 UFQ 14 UFQ O11 O3 O 0 1 N N N -9.198 25.574 -31.499 4.442 -0.689 -0.719 O11 UFQ 15 UFQ O12 O4 O 0 1 N N N -9.278 26.804 -29.300 6.284 -1.354 -2.474 O12 UFQ 16 UFQ O13 O5 O 0 1 N N N -10.292 27.996 -31.303 6.208 -2.411 -0.183 O13 UFQ 17 UFQ O2 O6 O 0 1 N N N -12.658 17.017 -28.643 -6.127 2.138 -0.701 O2 UFQ 18 UFQ O3 O7 O 0 1 N N N -11.357 19.312 -31.020 -2.935 0.491 -0.711 O3 UFQ 19 UFQ O4 O8 O 0 1 N N N -13.174 19.700 -28.442 -4.090 3.653 -1.271 O4 UFQ 20 UFQ O5 O9 O 0 1 N N N -9.951 21.682 -28.685 -0.248 1.388 -0.056 O5 UFQ 21 UFQ O6 O10 O 0 1 N N N -7.430 22.182 -28.547 0.844 0.860 2.157 O6 UFQ 22 UFQ O7 O11 O 0 1 N N N -9.195 23.892 -27.785 1.703 2.871 0.896 O7 UFQ 23 UFQ O8 O12 O 0 1 N N N -8.729 23.362 -30.217 2.195 0.424 0.070 O8 UFQ 24 UFQ O9 O13 O 0 1 N N N -10.920 24.450 -30.189 3.133 -1.683 1.333 O9 UFQ 25 UFQ P1 P1 P 0 1 N N N -8.790 22.784 -28.670 1.117 1.374 0.797 P1 UFQ 26 UFQ P2 P2 P 0 1 N N N -9.702 24.168 -31.080 3.532 -0.329 0.559 P2 UFQ 27 UFQ P3 P3 P 0 1 N N N -9.323 27.019 -30.799 5.976 -1.142 -0.908 P3 UFQ 28 UFQ S1 S1 S 0 1 N N N -7.502 27.905 -30.811 7.256 0.359 -0.132 S1 UFQ 29 UFQ H1 H1 H 0 1 N N N -11.060 14.015 -35.014 -7.116 -4.848 0.102 H1 UFQ 30 UFQ H2 H2 H 0 1 N N N -9.604 13.683 -34.136 -6.350 -4.657 1.585 H2 UFQ 31 UFQ H3 H3 H 0 1 N N N -9.645 16.615 -30.483 -5.941 -1.109 -2.428 H3 UFQ 32 UFQ H4 H4 H 0 1 N N N -13.132 18.225 -30.830 -4.532 0.647 -2.058 H4 UFQ 33 UFQ H5 H5 H 0 1 N N N -10.668 17.546 -29.084 -5.051 1.333 0.890 H5 UFQ 34 UFQ H6 H6 H 0 1 N N N -11.180 19.548 -27.804 -3.619 3.186 0.698 H6 UFQ 35 UFQ H7 H7 H 0 1 N N N -12.029 21.050 -30.092 -2.181 2.193 -1.640 H7 UFQ 36 UFQ H8 H8 H 0 1 N N N -9.009 14.868 -32.056 -6.914 -3.237 -1.707 H8 UFQ 37 UFQ H9 H9 H 0 1 N N N -9.265 19.899 -29.373 -1.225 3.120 0.505 H9 UFQ 38 UFQ H10 H10 H 0 1 N N N -9.524 21.181 -30.605 -1.757 1.636 1.333 H10 UFQ 39 UFQ H11 H11 H 0 1 N N N -9.920 27.364 -28.880 7.192 -1.628 -2.662 H11 UFQ 40 UFQ H12 H12 H 0 1 N N N -12.456 16.865 -27.727 -6.515 2.871 -0.204 H12 UFQ 41 UFQ H13 H13 H 0 1 N N N -13.495 19.216 -27.690 -4.897 4.158 -1.098 H13 UFQ 42 UFQ H14 H14 H 0 1 N N N -8.481 24.105 -27.196 1.906 3.272 0.040 H14 UFQ 43 UFQ H15 H15 H 0 1 N N N -11.705 24.121 -30.611 2.632 -2.311 0.794 H15 UFQ 44 UFQ H16 H16 H 0 1 N N N -7.780 29.088 -31.274 6.940 1.438 -0.871 H16 UFQ 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UFQ N3 C2 SING N N 1 UFQ N2 C2 DOUB N N 2 UFQ N2 C1 SING N N 3 UFQ C2 C3 SING N N 4 UFQ O1 C1 DOUB N N 5 UFQ C1 N1 SING N N 6 UFQ O10 P2 DOUB N N 7 UFQ C3 C4 DOUB N N 8 UFQ O11 P2 SING N N 9 UFQ O11 P3 SING N N 10 UFQ N1 C4 SING N N 11 UFQ N1 C5 SING N N 12 UFQ O13 P3 DOUB N N 13 UFQ P2 O8 SING N N 14 UFQ P2 O9 SING N N 15 UFQ O3 C5 SING N N 16 UFQ O3 C8 SING N N 17 UFQ S1 P3 SING N N 18 UFQ P3 O12 SING N N 19 UFQ C5 C6 SING N N 20 UFQ O8 P1 SING N N 21 UFQ C8 C9 SING N N 22 UFQ C8 C7 SING N N 23 UFQ C9 O5 SING N N 24 UFQ C6 C7 SING N N 25 UFQ C6 O2 SING N N 26 UFQ O5 P1 SING N N 27 UFQ P1 O6 DOUB N N 28 UFQ P1 O7 SING N N 29 UFQ C7 O4 SING N N 30 UFQ N3 H1 SING N N 31 UFQ N3 H2 SING N N 32 UFQ C4 H3 SING N N 33 UFQ C5 H4 SING N N 34 UFQ C6 H5 SING N N 35 UFQ C7 H6 SING N N 36 UFQ C8 H7 SING N N 37 UFQ C3 H8 SING N N 38 UFQ C9 H9 SING N N 39 UFQ C9 H10 SING N N 40 UFQ O12 H11 SING N N 41 UFQ O2 H12 SING N N 42 UFQ O4 H13 SING N N 43 UFQ O7 H14 SING N N 44 UFQ O9 H15 SING N N 45 UFQ S1 H16 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UFQ InChI InChI 1.03 "InChI=1S/C9H16N3O13P3S/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(23-8)3-22-26(16,17)24-27(18,19)25-28(20,21)29/h1-2,4,6-8,13-14H,3H2,(H,16,17)(H,18,19)(H2,10,11,15)(H2,20,21,29)/t4-,6-,7-,8-/m1/s1" UFQ InChIKey InChI 1.03 BMMOFBYKCSBIJP-XVFCMESISA-N UFQ SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(S)=O)[C@@H](O)[C@H]2O" UFQ SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(S)=O)[CH](O)[CH]2O" UFQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)S)O)O" UFQ SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)S)O)O" # _pdbx_chem_comp_identifier.comp_id UFQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UFQ _pdbx_chem_comp_synonyms.name "[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UFQ "Create component" 2021-02-13 PDBE UFQ "Modify synonyms" 2021-02-14 PDBE UFQ "Initial release" 2021-09-08 RCSB ##