data_UG9 # _chem_comp.id UG9 _chem_comp.name "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-iodanyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H20 I N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-03 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.319 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UG9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CEV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UG9 N N1 N 0 1 N N N 19.116 13.593 41.576 8.052 -0.127 0.846 N UG9 1 UG9 CA C1 C 0 1 N N S 20.527 13.355 41.162 7.229 -1.183 0.241 CA UG9 2 UG9 C C2 C 0 1 N N N 20.571 12.226 40.125 8.072 -1.993 -0.710 C UG9 3 UG9 O O1 O 0 1 N N N 21.615 11.544 40.056 7.681 -3.225 -1.071 O UG9 4 UG9 CB C3 C 0 1 N N N 21.396 13.016 42.376 6.065 -0.548 -0.522 CB UG9 5 UG9 OXT O2 O 0 1 N N N 19.548 12.072 39.415 9.100 -1.533 -1.148 OXT UG9 6 UG9 C10 C4 C 0 1 Y N N 21.998 22.896 44.052 -4.817 2.392 -1.802 C10 UG9 7 UG9 C12 C5 C 0 1 Y N N 22.710 21.245 45.349 -2.989 1.404 -0.814 C12 UG9 8 UG9 C13 C6 C 0 1 Y N N 22.651 22.050 46.497 -3.752 0.237 -0.619 C13 UG9 9 UG9 C14 C7 C 0 1 Y N N 23.069 21.224 47.580 -2.870 -0.722 0.043 C14 UG9 10 UG9 C16 C8 C 0 1 Y N N 23.361 19.993 47.086 -1.684 -0.112 0.204 C16 UG9 11 UG9 C18 C9 C 0 1 N N R 23.317 18.859 44.815 -0.634 2.118 -0.304 C18 UG9 12 UG9 C19 C10 C 0 1 N N R 24.716 18.259 44.799 -0.684 2.997 0.965 C19 UG9 13 UG9 C21 C11 C 0 1 N N S 24.438 16.847 44.261 0.801 3.190 1.347 C21 UG9 14 UG9 C23 C12 C 0 1 N N S 22.971 16.593 44.633 1.572 2.404 0.263 C23 UG9 15 UG9 C25 C13 C 0 1 N N N 22.774 15.423 45.577 2.793 1.713 0.873 C25 UG9 16 UG9 C27 C14 C 0 1 N N N 21.780 14.229 43.212 5.141 0.170 0.463 C27 UG9 17 UG9 C8 C15 C 0 1 Y N N 22.215 23.385 46.297 -5.085 0.224 -1.058 C8 UG9 18 UG9 I15 I1 I 0 1 N N N 23.161 21.807 49.604 -3.361 -2.672 0.629 I15 UG9 19 UG9 N11 N2 N 0 1 Y N N 22.392 21.623 44.107 -3.564 2.449 -1.407 N11 UG9 20 UG9 N17 N3 N 0 1 Y N N 23.143 19.993 45.719 -1.743 1.160 -0.305 N17 UG9 21 UG9 N7 N4 N 0 1 N N N 22.103 24.281 47.282 -5.875 -0.898 -0.890 N7 UG9 22 UG9 N9 N5 N 0 1 Y N N 21.892 23.779 45.047 -5.569 1.318 -1.640 N9 UG9 23 UG9 O20 O3 O 0 1 N N N 25.567 18.996 43.927 -1.298 4.255 0.679 O20 UG9 24 UG9 O22 O4 O 0 1 N N N 24.619 16.771 42.851 1.152 4.574 1.307 O22 UG9 25 UG9 O24 O5 O 0 1 N N N 22.478 17.809 45.239 0.630 1.424 -0.223 O24 UG9 26 UG9 S26 S1 S 0 1 N N N 22.847 13.875 44.636 3.760 0.923 -0.442 S26 UG9 27 UG9 H1 H1 H 0 1 N N N 19.086 14.329 42.252 8.426 0.490 0.140 H1 UG9 28 UG9 H2 H2 H 0 1 N N N 18.574 13.852 40.777 7.527 0.390 1.536 H2 UG9 29 UG9 H4 H4 H 0 1 N N N 20.922 14.270 40.696 6.839 -1.833 1.025 H4 UG9 30 UG9 H5 H5 H 0 1 N N N 21.519 10.884 39.379 8.254 -3.706 -1.683 H5 UG9 31 UG9 H6 H6 H 0 1 N N N 20.840 12.315 43.016 6.453 0.169 -1.246 H6 UG9 32 UG9 H7 H7 H 0 1 N N N 22.318 12.534 42.019 5.506 -1.325 -1.044 H7 UG9 33 UG9 H8 H8 H 0 1 N N N 21.729 23.261 43.072 -5.251 3.261 -2.275 H8 UG9 34 UG9 H9 H9 H 0 1 N N N 23.707 19.150 47.666 -0.814 -0.557 0.664 H9 UG9 35 UG9 H10 H10 H 0 1 N N N 23.054 19.164 43.791 -0.669 2.739 -1.199 H10 UG9 36 UG9 H11 H11 H 0 1 N N N 25.122 18.204 45.820 -1.220 2.485 1.764 H11 UG9 37 UG9 H12 H12 H 0 1 N N N 25.080 16.122 44.783 0.999 2.773 2.334 H12 UG9 38 UG9 H13 H13 H 0 1 N N N 22.411 16.392 43.708 1.876 3.071 -0.545 H13 UG9 39 UG9 H14 H14 H 0 1 N N N 23.568 15.428 46.339 3.411 2.452 1.384 H14 UG9 40 UG9 H15 H15 H 0 1 N N N 21.794 15.508 46.068 2.464 0.958 1.586 H15 UG9 41 UG9 H16 H16 H 0 1 N N N 22.308 14.940 42.559 4.753 -0.547 1.187 H16 UG9 42 UG9 H17 H17 H 0 1 N N N 20.855 14.692 43.586 5.700 0.947 0.985 H17 UG9 43 UG9 H18 H18 H 0 1 N N N 21.778 25.150 46.908 -5.510 -1.689 -0.464 H18 UG9 44 UG9 H19 H19 H 0 1 N N N 21.452 23.947 47.963 -6.795 -0.894 -1.198 H19 UG9 45 UG9 H20 H20 H 0 1 N N N 25.718 19.862 44.288 -1.355 4.847 1.441 H20 UG9 46 UG9 H21 H21 H 0 1 N N N 25.531 16.931 42.639 0.697 5.115 1.967 H21 UG9 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UG9 OXT C DOUB N N 1 UG9 O C SING N N 2 UG9 C CA SING N N 3 UG9 CA N SING N N 4 UG9 CA CB SING N N 5 UG9 CB C27 SING N N 6 UG9 O22 C21 SING N N 7 UG9 C27 S26 SING N N 8 UG9 O20 C19 SING N N 9 UG9 C10 N11 DOUB Y N 10 UG9 C10 N9 SING Y N 11 UG9 N11 C12 SING Y N 12 UG9 C21 C23 SING N N 13 UG9 C21 C19 SING N N 14 UG9 C23 O24 SING N N 15 UG9 C23 C25 SING N N 16 UG9 S26 C25 SING N N 17 UG9 C19 C18 SING N N 18 UG9 C18 O24 SING N N 19 UG9 C18 N17 SING N N 20 UG9 N9 C8 DOUB Y N 21 UG9 C12 N17 SING Y N 22 UG9 C12 C13 DOUB Y N 23 UG9 N17 C16 SING Y N 24 UG9 C8 C13 SING Y N 25 UG9 C8 N7 SING N N 26 UG9 C13 C14 SING Y N 27 UG9 C16 C14 DOUB Y N 28 UG9 C14 I15 SING N N 29 UG9 N H1 SING N N 30 UG9 N H2 SING N N 31 UG9 CA H4 SING N N 32 UG9 O H5 SING N N 33 UG9 CB H6 SING N N 34 UG9 CB H7 SING N N 35 UG9 C10 H8 SING N N 36 UG9 C16 H9 SING N N 37 UG9 C18 H10 SING N N 38 UG9 C19 H11 SING N N 39 UG9 C21 H12 SING N N 40 UG9 C23 H13 SING N N 41 UG9 C25 H14 SING N N 42 UG9 C25 H15 SING N N 43 UG9 C27 H16 SING N N 44 UG9 C27 H17 SING N N 45 UG9 N7 H18 SING N N 46 UG9 N7 H19 SING N N 47 UG9 O20 H20 SING N N 48 UG9 O22 H21 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UG9 InChI InChI 1.06 "InChI=1S/C15H20IN5O5S/c16-6-3-21(13-9(6)12(18)19-5-20-13)14-11(23)10(22)8(26-14)4-27-2-1-7(17)15(24)25/h3,5,7-8,10-11,14,22-23H,1-2,4,17H2,(H,24,25)(H2,18,19,20)/t7-,8+,10+,11+,14+/m0/s1" UG9 InChIKey InChI 1.06 KWPUSSSCXHTEIW-TWBCTODHSA-N UG9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(I)c3c(N)ncnc23)C(O)=O" UG9 SMILES CACTVS 3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(I)c3c(N)ncnc23)C(O)=O" UG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O)N)I" UG9 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c2c(ncnc2n1C3C(C(C(O3)CSCCC(C(=O)O)N)O)O)N)I" # _pdbx_chem_comp_identifier.comp_id UG9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-iodanyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UG9 "Create component" 2023-02-03 PDBE UG9 "Initial release" 2023-04-05 RCSB #