data_UGO # _chem_comp.id UGO _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{6-[2-nitro-4-(pyrimidin-2-yl)anilino]hexyl}piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H32 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-18 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 462.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8E3J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UGO N1 N1 N 0 1 N N N -35.145 -30.368 -69.489 ? ? ? N1 UGO 1 UGO N3 N2 N 1 1 N N N -43.167 -25.930 -64.229 ? ? ? N3 UGO 2 UGO C4 C1 C 0 1 N N N -33.427 -28.746 -68.798 ? ? ? C4 UGO 3 UGO C5 C2 C 0 1 N N N -36.076 -29.685 -69.051 ? ? ? C5 UGO 4 UGO C6 C3 C 0 1 N N N -36.269 -29.862 -67.495 ? ? ? C6 UGO 5 UGO C7 C4 C 0 1 N N N -37.597 -29.242 -66.891 ? ? ? C7 UGO 6 UGO C8 C5 C 0 1 N N N -37.883 -29.653 -65.375 ? ? ? C8 UGO 7 UGO C10 C6 C 0 1 N N N -40.416 -28.984 -65.389 ? ? ? C10 UGO 8 UGO C13 C7 C 0 1 Y N N -44.499 -25.999 -66.396 ? ? ? C13 UGO 9 UGO C15 C8 C 0 1 Y N N -45.926 -25.977 -68.447 ? ? ? C15 UGO 10 UGO C17 C9 C 0 1 Y N N -48.028 -25.011 -69.853 ? ? ? C17 UGO 11 UGO C20 C10 C 0 1 Y N N -42.732 -28.004 -67.420 ? ? ? C20 UGO 12 UGO C21 C11 C 0 1 N N N -35.446 -31.771 -69.720 ? ? ? C21 UGO 13 UGO C22 C12 C 0 1 N N S -34.340 -32.452 -70.514 ? ? ? C22 UGO 14 UGO O1 O1 O 0 1 N N N -32.051 -32.889 -70.916 ? ? ? O1 UGO 15 UGO C1 C13 C 0 1 N N R -33.043 -32.322 -69.923 ? ? ? C1 UGO 16 UGO C2 C14 C 0 1 N N R -32.679 -30.948 -69.692 ? ? ? C2 UGO 17 UGO O2 O2 O 0 1 N N N -31.402 -30.939 -69.036 ? ? ? O2 UGO 18 UGO C3 C15 C 0 1 N N R -33.777 -30.162 -68.845 ? ? ? C3 UGO 19 UGO O3 O3 O 0 1 N N N -33.418 -28.217 -70.094 ? ? ? O3 UGO 20 UGO C9 C16 C 0 1 N N N -39.045 -28.773 -64.717 ? ? ? C9 UGO 21 UGO N2 N3 N 0 1 N N N -41.345 -27.894 -65.158 ? ? ? N2 UGO 22 UGO C11 C17 C 0 1 Y N N -42.487 -27.472 -66.083 ? ? ? C11 UGO 23 UGO C12 C18 C 0 1 Y N N -43.364 -26.488 -65.589 ? ? ? C12 UGO 24 UGO O4 O4 O 0 1 N N N -43.174 -26.786 -63.086 ? ? ? O4 UGO 25 UGO O5 O5 O -1 1 N N N -43.018 -24.565 -64.125 ? ? ? O5 UGO 26 UGO C14 C19 C 0 1 Y N N -44.744 -26.513 -67.666 ? ? ? C14 UGO 27 UGO N4 N4 N 0 1 Y N N -46.006 -26.206 -69.764 ? ? ? N4 UGO 28 UGO C16 C20 C 0 1 Y N N -47.054 -25.727 -70.500 ? ? ? C16 UGO 29 UGO C18 C21 C 0 1 Y N N -47.920 -24.781 -68.433 ? ? ? C18 UGO 30 UGO N5 N5 N 0 1 Y N N -46.870 -25.278 -67.793 ? ? ? N5 UGO 31 UGO C19 C22 C 0 1 Y N N -43.839 -27.547 -68.200 ? ? ? C19 UGO 32 UGO O6 O6 O 0 1 N N N -34.614 -33.909 -70.667 ? ? ? O6 UGO 33 UGO H2 H2 H 0 1 N N N -32.429 -28.631 -68.350 ? ? ? H2 UGO 34 UGO H3 H3 H 0 1 N N N -34.167 -28.207 -68.189 ? ? ? H3 UGO 35 UGO H4 H4 H 0 1 N N N -35.868 -28.626 -69.263 ? ? ? H4 UGO 36 UGO H5 H5 H 0 1 N N N -37.004 -29.985 -69.559 ? ? ? H5 UGO 37 UGO H6 H6 H 0 1 N N N -36.269 -30.940 -67.275 ? ? ? H6 UGO 38 UGO H7 H7 H 0 1 N N N -35.415 -29.385 -66.992 ? ? ? H7 UGO 39 UGO H8 H8 H 0 1 N N N -37.520 -28.146 -66.942 ? ? ? H8 UGO 40 UGO H9 H9 H 0 1 N N N -38.445 -29.579 -67.505 ? ? ? H9 UGO 41 UGO H10 H10 H 0 1 N N N -38.181 -30.711 -65.346 ? ? ? H10 UGO 42 UGO H11 H11 H 0 1 N N N -36.961 -29.515 -64.791 ? ? ? H11 UGO 43 UGO H12 H12 H 0 1 N N N -40.859 -29.910 -64.993 ? ? ? H12 UGO 44 UGO H13 H13 H 0 1 N N N -40.261 -29.086 -66.473 ? ? ? H13 UGO 45 UGO H14 H14 H 0 1 N N N -45.147 -25.233 -65.996 ? ? ? H14 UGO 46 UGO H15 H15 H 0 1 N N N -48.872 -24.621 -70.404 ? ? ? H15 UGO 47 UGO H16 H16 H 0 1 N N N -42.068 -28.753 -67.825 ? ? ? H16 UGO 48 UGO H17 H17 H 0 1 N N N -36.389 -31.847 -70.281 ? ? ? H17 UGO 49 UGO H18 H18 H 0 1 N N N -35.555 -32.278 -68.750 ? ? ? H18 UGO 50 UGO H19 H19 H 0 1 N N N -34.321 -32.000 -71.517 ? ? ? H19 UGO 51 UGO H20 H20 H 0 1 N N N -31.173 -32.822 -70.560 ? ? ? H20 UGO 52 UGO H21 H21 H 0 1 N N N -32.988 -32.895 -68.986 ? ? ? H21 UGO 53 UGO H22 H22 H 0 1 N N N -32.589 -30.434 -70.660 ? ? ? H22 UGO 54 UGO H23 H23 H 0 1 N N N -31.137 -30.042 -68.871 ? ? ? H23 UGO 55 UGO H24 H24 H 0 1 N N N -33.792 -30.580 -67.828 ? ? ? H24 UGO 56 UGO H25 H25 H 0 1 N N N -33.190 -27.295 -70.059 ? ? ? H25 UGO 57 UGO H26 H26 H 0 1 N N N -38.772 -27.711 -64.804 ? ? ? H26 UGO 58 UGO H27 H27 H 0 1 N N N -39.130 -29.044 -63.654 ? ? ? H27 UGO 59 UGO H28 H28 H 0 1 N N N -40.773 -27.079 -65.060 ? ? ? H28 UGO 60 UGO H29 H29 H 0 1 N N N -47.113 -25.908 -71.563 ? ? ? H29 UGO 61 UGO H30 H30 H 0 1 N N N -48.675 -24.218 -67.904 ? ? ? H30 UGO 62 UGO H31 H31 H 0 1 N N N -44.013 -27.960 -69.183 ? ? ? H31 UGO 63 UGO H32 H32 H 0 1 N N N -35.471 -34.031 -71.058 ? ? ? H32 UGO 64 UGO H1 H1 H 0 1 N N N -42.928 -24.325 -63.210 ? ? ? H1 UGO 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UGO O1 C1 SING N N 1 UGO O6 C22 SING N N 2 UGO C22 C1 SING N N 3 UGO C22 C21 SING N N 4 UGO C16 C17 DOUB Y N 5 UGO C16 N4 SING Y N 6 UGO O3 C4 SING N N 7 UGO C1 C2 SING N N 8 UGO C17 C18 SING Y N 9 UGO N4 C15 DOUB Y N 10 UGO C21 N1 SING N N 11 UGO C2 O2 SING N N 12 UGO C2 C3 SING N N 13 UGO N1 C5 SING N N 14 UGO N1 C3 SING N N 15 UGO C5 C6 SING N N 16 UGO C3 C4 SING N N 17 UGO C15 N5 SING Y N 18 UGO C15 C14 SING N N 19 UGO C18 N5 DOUB Y N 20 UGO C19 C14 DOUB Y N 21 UGO C19 C20 SING Y N 22 UGO C14 C13 SING Y N 23 UGO C6 C7 SING N N 24 UGO C20 C11 DOUB Y N 25 UGO C7 C8 SING N N 26 UGO C13 C12 DOUB Y N 27 UGO C11 C12 SING Y N 28 UGO C11 N2 SING N N 29 UGO C12 N3 SING N N 30 UGO C10 N2 SING N N 31 UGO C10 C9 SING N N 32 UGO C8 C9 SING N N 33 UGO N3 O5 SING N N 34 UGO N3 O4 DOUB N N 35 UGO C4 H2 SING N N 36 UGO C4 H3 SING N N 37 UGO C5 H4 SING N N 38 UGO C5 H5 SING N N 39 UGO C6 H6 SING N N 40 UGO C6 H7 SING N N 41 UGO C7 H8 SING N N 42 UGO C7 H9 SING N N 43 UGO C8 H10 SING N N 44 UGO C8 H11 SING N N 45 UGO C10 H12 SING N N 46 UGO C10 H13 SING N N 47 UGO C13 H14 SING N N 48 UGO C17 H15 SING N N 49 UGO C20 H16 SING N N 50 UGO C21 H17 SING N N 51 UGO C21 H18 SING N N 52 UGO C22 H19 SING N N 53 UGO O1 H20 SING N N 54 UGO C1 H21 SING N N 55 UGO C2 H22 SING N N 56 UGO O2 H23 SING N N 57 UGO C3 H24 SING N N 58 UGO O3 H25 SING N N 59 UGO C9 H26 SING N N 60 UGO C9 H27 SING N N 61 UGO N2 H28 SING N N 62 UGO C16 H29 SING N N 63 UGO C18 H30 SING N N 64 UGO C19 H31 SING N N 65 UGO O6 H32 SING N N 66 UGO O5 H1 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UGO SMILES ACDLabs 12.01 "O=N(=O)c1cc(ccc1NCCCCCCN1CC(O)C(O)C(O)C1CO)c1ncccn1" UGO InChI InChI 1.06 "InChI=1S/C22H32N5O6/c28-14-18-20(30)21(31)19(29)13-26(18)11-4-2-1-3-8-23-16-7-6-15(12-17(16)27(32)33)22-24-9-5-10-25-22/h5-7,9-10,12,18-21,23,28-32H,1-4,8,11,13-14H2/t18-,19+,20-,21-/m1/s1" UGO InChIKey InChI 1.06 WPRQGBYRQQLONQ-PLACYPQZSA-N UGO SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([OH-])=O)c3ncccn3" UGO SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([OH-])=O)c3ncccn3" UGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1)c2ccc(c(c2)[N+](=O)[OH-])NCCCCCCN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O" UGO SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1)c2ccc(c(c2)[N+](=O)[OH-])NCCCCCCN3CC(C(C(C3CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UGO "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{6-[2-nitro-4-(pyrimidin-2-yl)anilino]hexyl}piperidine-3,4,5-triol" UGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[6-[(2-nitro-4-pyrimidin-2-yl-phenyl)amino]hexyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UGO "Create component" 2022-08-18 RCSB UGO "Modify coordinates" 2022-08-24 RCSB UGO "Modify coordinates" 2022-10-05 RCSB UGO "Initial release" 2023-02-22 RCSB #