data_UHB
#
_chem_comp.id UHB
_chem_comp.name "2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H27 N9 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-04-18
_chem_comp.pdbx_modified_date 2013-12-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 537.528
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UHB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UHB C01 C01 C 0 1 Y N N -39.107 -13.126 16.137 8.359 -1.777 -1.422 C01 UHB 1
UHB C02 C02 C 0 1 Y N N -40.150 -14.174 16.099 7.274 -1.240 -2.083 C02 UHB 2
UHB C03 C03 C 0 1 Y N N -40.796 -14.507 14.825 6.418 -0.370 -1.433 C03 UHB 3
UHB C04 C04 C 0 1 Y N N -40.420 -13.756 13.577 6.647 -0.030 -0.104 C04 UHB 4
UHB C05 C05 C 0 1 Y N N -39.327 -12.712 13.623 7.732 -0.564 0.565 C05 UHB 5
UHB C06 C06 C 0 1 Y N N -38.697 -12.409 14.878 8.598 -1.443 -0.087 C06 UHB 6
UHB C07 C07 C 0 1 N N N -37.691 -11.382 14.642 9.651 -1.845 0.865 C07 UHB 7
UHB C08 C08 C 0 1 N N N -38.723 -11.843 12.598 8.257 -0.411 1.971 C08 UHB 8
UHB N09 N09 N 0 1 N N N -37.719 -11.044 13.243 9.457 -1.251 2.055 N09 UHB 9
UHB O10 O10 O 0 1 N N N -36.966 -10.897 15.466 10.564 -2.607 0.610 O10 UHB 10
UHB N11 N11 N 0 1 N N N -41.094 -14.120 12.363 5.781 0.851 0.554 N11 UHB 11
UHB C12 C12 C 0 1 N N N -41.547 -13.223 11.309 4.540 1.063 0.071 C12 UHB 12
UHB O13 O13 O 0 1 N N N -41.389 -12.005 11.376 4.139 0.416 -0.874 O13 UHB 13
UHB C14 C14 C 0 1 N N N -42.240 -13.936 10.094 3.653 2.103 0.704 C14 UHB 14
UHB N15 N15 N 0 1 N N N -42.743 -12.951 9.132 2.364 2.140 0.001 N15 UHB 15
UHB C16 C16 C 0 1 N N N -41.603 -12.569 8.290 1.563 3.295 0.430 C16 UHB 16
UHB C17 C17 C 0 1 N N N -41.842 -11.447 7.286 0.313 3.401 -0.451 C17 UHB 17
UHB N18 N18 N 0 1 N N N -42.731 -10.405 7.766 -0.391 2.110 -0.421 N18 UHB 18
UHB C19 C19 C 0 1 N N N -43.960 -10.970 8.192 0.380 0.891 -0.706 C19 UHB 19
UHB C20 C20 C 0 1 N N N -43.753 -11.946 9.324 1.627 0.883 0.184 C20 UHB 20
UHB C21 C21 C 0 1 N N N -42.396 -8.975 7.840 -1.707 2.047 -0.138 C21 UHB 21
UHB C22 C22 C 0 1 N N S -41.070 -8.454 7.373 -2.384 0.708 0.001 C22 UHB 22
UHB C23 C23 C 0 1 N N S -40.011 -8.532 8.456 -2.644 0.089 -1.391 C23 UHB 23
UHB C24 C24 C 0 1 N N R -39.714 -7.150 8.759 -4.014 -0.609 -1.242 C24 UHB 24
UHB C25 C25 C 0 1 N N R -39.986 -6.494 7.476 -4.420 -0.330 0.222 C25 UHB 25
UHB O26 O26 O 0 1 N N N -41.210 -7.078 6.996 -3.696 0.865 0.585 O26 UHB 26
UHB O27 O27 O 0 1 N N N -43.205 -8.157 8.288 -2.347 3.067 0.004 O27 UHB 27
UHB O28 O28 O 0 1 N N N -38.914 -9.245 8.007 -1.628 -0.863 -1.713 O28 UHB 28
UHB O29 O29 O 0 1 N N N -38.364 -6.970 9.272 -3.887 -2.014 -1.468 O29 UHB 29
UHB N30 N30 N 0 1 Y N N -40.095 -5.086 7.518 -5.864 -0.100 0.315 N30 UHB 30
UHB C31 C31 C 0 1 Y N N -39.822 -2.968 6.892 -8.058 -0.376 0.489 C31 UHB 31
UHB C32 C32 C 0 1 Y N N -39.559 -4.250 6.547 -6.834 -1.064 0.433 C32 UHB 32
UHB C33 C33 C 0 1 Y N N -40.699 -4.312 8.452 -6.490 1.111 0.308 C33 UHB 33
UHB N34 N34 N 0 1 Y N N -40.531 -3.001 8.084 -7.777 0.947 0.408 N34 UHB 34
UHB N35 N35 N 0 1 Y N N -38.622 -2.114 4.797 -9.139 -2.454 0.668 N35 UHB 35
UHB C36 C36 C 0 1 Y N N -38.347 -3.459 4.444 -7.965 -3.056 0.612 C36 UHB 36
UHB N37 N37 N 0 1 Y N N -38.819 -4.540 5.313 -6.835 -2.391 0.497 N37 UHB 37
UHB C38 C38 C 0 1 Y N N -39.328 -1.829 5.978 -9.237 -1.130 0.612 C38 UHB 38
UHB N39 N39 N 0 1 N N N -39.576 -0.493 6.313 -10.472 -0.509 0.672 N39 UHB 39
UHB H01 H01 H 0 1 N N N -38.636 -12.873 17.075 9.021 -2.459 -1.935 H01 UHB 40
UHB H02 H02 H 0 1 N N N -40.434 -14.691 17.004 7.092 -1.500 -3.116 H02 UHB 41
UHB H03 H03 H 0 1 N N N -41.540 -15.289 14.783 5.572 0.046 -1.959 H03 UHB 42
UHB H081 H081 H 0 0 N N N -38.264 -12.457 11.809 8.515 0.631 2.162 H081 UHB 43
UHB H082 H082 H 0 0 N N N -39.493 -11.193 12.156 7.510 -0.751 2.689 H082 UHB 44
UHB HN09 HN09 H 0 0 N N N -37.136 -10.366 12.795 10.017 -1.359 2.839 HN09 UHB 45
UHB H14 H14 H 0 1 N N N -41.509 -14.588 9.594 3.488 1.851 1.751 H14 UHB 46
UHB H14A H14A H 0 0 N N N -43.081 -14.542 10.463 4.132 3.079 0.636 H14A UHB 47
UHB H16 H16 H 0 1 N N N -40.787 -12.252 8.956 1.265 3.164 1.470 H16 UHB 48
UHB H16A H16A H 0 0 N N N -41.291 -13.460 7.726 2.155 4.205 0.332 H16A UHB 49
UHB H17 H17 H 0 1 N N N -40.872 -10.989 7.042 -0.340 4.184 -0.065 H17 UHB 50
UHB H17A H17A H 0 0 N N N -42.280 -11.884 6.377 0.605 3.635 -1.474 H17A UHB 51
UHB H19 H19 H 0 1 N N N -44.626 -10.163 8.532 -0.230 0.013 -0.490 H19 UHB 52
UHB H19A H19A H 0 0 N N N -44.424 -11.497 7.345 0.678 0.883 -1.754 H19A UHB 53
UHB H20 H20 H 0 1 N N N -44.709 -12.462 9.498 2.265 0.043 -0.091 H20 UHB 54
UHB H20A H20A H 0 0 N N N -43.481 -11.366 10.219 1.328 0.786 1.228 H20A UHB 55
UHB H22 H22 H 0 1 N N N -40.737 -9.047 6.509 -1.776 0.036 0.606 H22 UHB 56
UHB H23 H23 H 0 1 N N N -40.449 -9.017 9.341 -2.693 0.868 -2.152 H23 UHB 57
UHB H24 H24 H 0 1 N N N -40.433 -6.782 9.506 -4.740 -0.175 -1.929 H24 UHB 58
UHB H25 H25 H 0 1 N N N -39.178 -6.764 6.780 -4.125 -1.162 0.862 H25 UHB 59
UHB HO28 HO28 H 0 0 N N N -38.259 -9.286 8.694 -1.742 -1.283 -2.577 HO28 UHB 60
UHB HO29 HO29 H 0 0 N N N -38.215 -6.050 9.456 -3.575 -2.244 -2.354 HO29 UHB 61
UHB H33 H33 H 0 1 N N N -41.220 -4.664 9.330 -5.991 2.066 0.231 H33 UHB 62
UHB H36 H36 H 0 1 N N N -37.795 -3.685 3.544 -7.931 -4.135 0.661 H36 UHB 63
UHB HN39 HN39 H 0 0 N N N -39.186 0.105 5.612 -10.531 0.459 0.629 HN39 UHB 64
UHB HN3A HN3A H 0 0 N N N -40.563 -0.341 6.369 -11.279 -1.040 0.757 HN3A UHB 65
UHB HN11 HN11 H 0 0 N N N -41.272 -15.095 12.226 6.073 1.309 1.357 HN11 UHB 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UHB C01 C02 DOUB Y N 1
UHB C01 C06 SING Y N 2
UHB C02 C03 SING Y N 3
UHB C03 C04 DOUB Y N 4
UHB C04 C05 SING Y N 5
UHB C04 N11 SING N N 6
UHB C05 C06 DOUB Y N 7
UHB C05 C08 SING N N 8
UHB C06 C07 SING N N 9
UHB C07 N09 SING N N 10
UHB C07 O10 DOUB N N 11
UHB C08 N09 SING N N 12
UHB N11 C12 SING N N 13
UHB C12 O13 DOUB N N 14
UHB C12 C14 SING N N 15
UHB C14 N15 SING N N 16
UHB N15 C16 SING N N 17
UHB N15 C20 SING N N 18
UHB C16 C17 SING N N 19
UHB C17 N18 SING N N 20
UHB N18 C19 SING N N 21
UHB N18 C21 SING N N 22
UHB C19 C20 SING N N 23
UHB C21 C22 SING N N 24
UHB C21 O27 DOUB N N 25
UHB C22 C23 SING N N 26
UHB C22 O26 SING N N 27
UHB C23 C24 SING N N 28
UHB C23 O28 SING N N 29
UHB C24 C25 SING N N 30
UHB C24 O29 SING N N 31
UHB C25 O26 SING N N 32
UHB C25 N30 SING N N 33
UHB N30 C32 SING Y N 34
UHB N30 C33 SING Y N 35
UHB C31 C32 DOUB Y N 36
UHB C31 N34 SING Y N 37
UHB C31 C38 SING Y N 38
UHB C32 N37 SING Y N 39
UHB C33 N34 DOUB Y N 40
UHB N35 C36 SING Y N 41
UHB N35 C38 DOUB Y N 42
UHB C36 N37 DOUB Y N 43
UHB C38 N39 SING N N 44
UHB C01 H01 SING N N 45
UHB C02 H02 SING N N 46
UHB C03 H03 SING N N 47
UHB C08 H081 SING N N 48
UHB C08 H082 SING N N 49
UHB N09 HN09 SING N N 50
UHB C14 H14 SING N N 51
UHB C14 H14A SING N N 52
UHB C16 H16 SING N N 53
UHB C16 H16A SING N N 54
UHB C17 H17 SING N N 55
UHB C17 H17A SING N N 56
UHB C19 H19 SING N N 57
UHB C19 H19A SING N N 58
UHB C20 H20 SING N N 59
UHB C20 H20A SING N N 60
UHB C22 H22 SING N N 61
UHB C23 H23 SING N N 62
UHB C24 H24 SING N N 63
UHB C25 H25 SING N N 64
UHB O28 HO28 SING N N 65
UHB O29 HO29 SING N N 66
UHB C33 H33 SING N N 67
UHB C36 H36 SING N N 68
UHB N39 HN39 SING N N 69
UHB N39 HN3A SING N N 70
UHB N11 HN11 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UHB SMILES ACDLabs 12.01 "O=C6C5=CC=C/C(=N/C(=O)CN4CCN(C(=O)C3OC(n2cnc1c(ncnc12)N)C(O)C3O)CC4)C5=CN6"
UHB InChI InChI 1.03
"InChI=1S/C24H25N9O6/c25-20-16-21(28-10-27-20)33(11-29-16)24-18(36)17(35)19(39-24)23(38)32-6-4-31(5-7-32)9-15(34)30-14-3-1-2-12-13(14)8-26-22(12)37/h1-3,8,10-11,17-19,24,35-36H,4-7,9H2,(H,26,37)(H2,25,27,28)/b30-14-/t17-,18+,19-,24+/m0/s1"
UHB InChIKey InChI 1.03 QEUOCRGVJJDDTK-VBFAUCSFSA-N
UHB SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)N4CCN(CC4)CC(=O)Nc5cccc6C(=O)NCc56"
UHB SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)N4CCN(CC4)CC(=O)Nc5cccc6C(=O)NCc56"
UHB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc2c(c(c1)NC(=O)CN3CCN(CC3)C(=O)[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)CNC2=O"
UHB SMILES "OpenEye OEToolkits" 1.7.6 "c1cc2c(c(c1)NC(=O)CN3CCN(CC3)C(=O)C4C(C(C(O4)n5cnc6c5ncnc6N)O)O)CNC2=O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UHB "SYSTEMATIC NAME" ACDLabs 12.01 "2-(4-{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}piperazin-1-yl)-N-[(4Z)-1-oxo-1,2-dihydro-4H-isoindol-4-ylidene]acetamide (non-preferred name)"
UHB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UHB "Create component" 2013-04-18 EBI
UHB "Initial release" 2013-12-11 RCSB
#