data_UJ9 # _chem_comp.id UJ9 _chem_comp.name "Cefepime (open)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H29 N6 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R,5S)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanyl-ethyl]-5-[(1-methylpyrrolidin-1-ium-1-yl)methyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid; Cefepimum (reacted)" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-02-06 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 485.601 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UJ9 C5 C1 C 0 1 N N R N N N 16.398 0.870 -3.926 -0.404 1.547 -0.922 C5 UJ9 1 UJ9 C15 C2 C 0 1 N N N N N N 16.723 2.064 -3.017 -0.547 2.564 -2.057 C15 UJ9 2 UJ9 C01 C3 C 0 1 N N R N N N 17.267 -0.383 -3.660 0.566 0.443 -1.346 C01 UJ9 3 UJ9 N01 N1 N 0 1 N N N N N N 18.620 -0.005 -3.312 0.611 -0.587 -0.315 N01 UJ9 4 UJ9 O1 O1 O 0 1 N N N N N N 17.910 2.637 -3.476 -0.939 1.889 -3.254 O1 UJ9 5 UJ9 S01 S1 S 0 1 N N N N N N 17.101 -1.591 -5.002 2.228 1.146 -1.566 S01 UJ9 6 UJ9 C02 C4 C 0 1 N N N N N N 21.001 -0.896 -6.189 3.752 -0.256 0.872 C02 UJ9 7 UJ9 N02 N2 N 0 1 N N N N N N 16.463 1.416 -5.282 -1.713 0.960 -0.626 N02 UJ9 8 UJ9 O02 O2 O 0 1 N N N N N N 14.467 0.591 -5.875 -2.274 2.684 0.657 O02 UJ9 9 UJ9 S02 S2 S 0 1 Y N N N N N 12.939 4.854 -7.469 -5.248 -2.668 -0.266 S02 UJ9 10 UJ9 C03 C5 C 0 1 N N N N N N 18.475 -1.046 -6.047 3.250 -0.361 -1.567 C03 UJ9 11 UJ9 N03 N3 N 0 1 N N N N N N 16.332 1.584 -8.518 -4.702 1.593 1.325 N03 UJ9 12 UJ9 O03 O3 O 0 1 N N N N N N 17.219 0.501 -8.414 -4.382 2.877 1.829 O03 UJ9 13 UJ9 C04 C6 C 0 1 N N S N N N 19.771 -0.851 -5.321 3.049 -1.064 -0.221 C04 UJ9 14 UJ9 N04 N4 N 0 1 N N N N N N 13.663 5.493 -9.985 -2.800 -3.318 -1.457 N04 UJ9 15 UJ9 O04 O4 O 0 1 N N N N N N 21.159 -0.092 -2.209 0.025 -2.492 1.475 O04 UJ9 16 UJ9 C05 C7 C 0 1 N N N N N N 19.740 -0.133 -4.116 1.605 -1.195 0.123 C05 UJ9 17 UJ9 N05 N5 N 1 1 N N N N N N 22.183 -1.822 -5.908 5.199 -0.243 0.618 N05 UJ9 18 UJ9 O05 O5 O 0 1 N N N N N N 21.822 0.887 -4.069 2.209 -2.800 1.713 O05 UJ9 19 UJ9 C06 C8 C 0 1 N N N N N N 21.897 -2.708 -4.716 5.622 -1.550 0.097 C06 UJ9 20 UJ9 N06 N6 N 0 1 Y N N N N N 14.724 3.695 -8.936 -3.224 -1.195 -0.465 N06 UJ9 21 UJ9 C07 C9 C 0 1 N N N N N N 15.471 1.240 -6.168 -2.558 1.588 0.216 C07 UJ9 22 UJ9 C08 C10 C 0 1 N N N N N N 15.578 1.881 -7.508 -3.834 0.941 0.604 C08 UJ9 23 UJ9 C09 C11 C 0 1 N N N N N N 16.705 -0.603 -9.165 -5.425 3.475 2.601 C09 UJ9 24 UJ9 C10 C12 C 0 1 Y N N N N N 14.684 3.024 -7.726 -4.122 -0.444 0.173 C10 UJ9 25 UJ9 C11 C13 C 0 1 N N N N N N 21.006 0.235 -3.398 1.304 -2.215 1.156 C11 UJ9 26 UJ9 C12 C14 C 0 1 Y N N N N N 13.856 4.675 -8.943 -3.590 -2.394 -0.793 C12 UJ9 27 UJ9 C14 C15 C 0 1 Y N N N N N 13.786 3.510 -6.829 -5.311 -1.037 0.396 C14 UJ9 28 UJ9 C22 C16 C 0 1 N N N N N N 22.524 -2.651 -7.122 5.521 0.808 -0.364 C22 UJ9 29 UJ9 C23 C17 C 0 1 N N N N N N 23.955 -3.167 -6.878 6.509 1.780 0.314 C23 UJ9 30 UJ9 C24 C18 C 0 1 N N N N N N 24.581 -2.142 -5.920 7.130 0.916 1.443 C24 UJ9 31 UJ9 C25 C19 C 0 1 N N N N N N 23.482 -1.097 -5.650 5.922 0.049 1.875 C25 UJ9 32 UJ9 H1 H1 H 0 1 N N N N N N 15.355 0.585 -3.725 -0.020 2.047 -0.033 H1 UJ9 33 UJ9 H2 H2 H 0 1 N N N N N N 15.909 2.802 -3.063 -1.304 3.301 -1.791 H2 UJ9 34 UJ9 H3 H3 H 0 1 N N N N N N 16.849 1.721 -1.979 0.408 3.065 -2.218 H3 UJ9 35 UJ9 H4 H4 H 0 1 N N N N N N 16.827 -0.890 -2.789 0.229 0.003 -2.284 H4 UJ9 36 UJ9 H5 H5 H 0 1 N N N N N N 18.135 3.381 -2.930 -1.048 2.473 -4.017 H5 UJ9 37 UJ9 H6 H6 H 0 1 N N N N N N 21.409 0.125 -6.189 3.373 0.766 0.869 H6 UJ9 38 UJ9 H7 H7 H 0 1 N N N N N N 20.650 -1.151 -7.200 3.557 -0.713 1.843 H7 UJ9 39 UJ9 H8 H8 H 0 1 N N N N N N 17.272 1.936 -5.557 -1.972 0.119 -1.035 H8 UJ9 40 UJ9 H9 H9 H 0 1 N N N N N N 18.194 -0.089 -6.511 2.937 -1.020 -2.377 H9 UJ9 41 UJ9 H10 H10 H 0 1 N N N N N N 18.631 -1.802 -6.831 4.300 -0.096 -1.691 H10 UJ9 42 UJ9 H11 H11 H 0 1 N N N N N N 19.855 -1.863 -4.898 3.494 -2.058 -0.269 H11 UJ9 43 UJ9 H12 H12 H 0 1 N N N N N N 14.276 5.234 -10.731 -1.894 -3.085 -1.713 H12 UJ9 44 UJ9 H13 H13 H 0 1 N N N N N N 12.714 5.422 -10.293 -3.152 -4.197 -1.666 H13 UJ9 45 UJ9 H14 H14 H 0 1 N N N N N N 21.995 0.234 -1.896 -0.122 -3.164 2.154 H14 UJ9 46 UJ9 H15 H15 H 0 1 N N N N N N 21.651 -2.083 -3.845 5.167 -1.716 -0.880 H15 UJ9 47 UJ9 H16 H16 H 0 1 N N N N N N 21.047 -3.368 -4.945 6.707 -1.568 0.000 H16 UJ9 48 UJ9 H17 H17 H 0 1 N N N N N N 22.784 -3.318 -4.491 5.305 -2.335 0.783 H17 UJ9 49 UJ9 H18 H18 H 0 1 N N N N N N 17.397 -1.454 -9.086 -5.652 2.840 3.458 H18 UJ9 50 UJ9 H19 H19 H 0 1 N N N N N N 15.722 -0.892 -8.766 -5.102 4.455 2.950 H19 UJ9 51 UJ9 H20 H20 H 0 1 N N N N N N 16.601 -0.311 -10.221 -6.317 3.584 1.984 H20 UJ9 52 UJ9 H21 H21 H 0 1 N N N N N N 13.627 3.102 -5.842 -6.158 -0.589 0.895 H21 UJ9 53 UJ9 H22 H22 H 0 1 N N N N N N 22.488 -2.034 -8.032 5.984 0.363 -1.245 H22 UJ9 54 UJ9 H23 H23 H 0 1 N N N N N N 21.823 -3.493 -7.222 4.613 1.340 -0.649 H23 UJ9 55 UJ9 H24 H24 H 0 1 N N N N N N 23.934 -4.166 -6.418 7.275 2.104 -0.389 H24 UJ9 56 UJ9 H25 H25 H 0 1 N N N N N N 24.518 -3.210 -7.822 5.980 2.638 0.732 H25 UJ9 57 UJ9 H26 H26 H 0 1 N N N N N N 24.885 -2.630 -4.982 7.939 0.295 1.059 H26 UJ9 58 UJ9 H27 H27 H 0 1 N N N N N N 25.456 -1.666 -6.386 7.477 1.540 2.267 H27 UJ9 59 UJ9 H28 H28 H 0 1 N N N N N N 23.529 -0.746 -4.608 5.282 0.604 2.560 H28 UJ9 60 UJ9 H29 H29 H 0 1 N N N N N N 23.588 -0.239 -6.331 6.264 -0.876 2.339 H29 UJ9 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UJ9 N04 C12 SING N N 1 UJ9 C09 O03 SING N N 2 UJ9 C12 N06 DOUB Y N 3 UJ9 C12 S02 SING Y N 4 UJ9 N06 C10 SING Y N 5 UJ9 N03 O03 SING N N 6 UJ9 N03 C08 DOUB N Z 7 UJ9 C10 C08 SING N N 8 UJ9 C10 C14 DOUB Y N 9 UJ9 C08 C07 SING N N 10 UJ9 S02 C14 SING Y N 11 UJ9 C22 C23 SING N N 12 UJ9 C22 N05 SING N N 13 UJ9 C23 C24 SING N N 14 UJ9 C02 N05 SING N N 15 UJ9 C02 C04 SING N N 16 UJ9 C07 O02 DOUB N N 17 UJ9 C07 N02 SING N N 18 UJ9 C03 C04 SING N N 19 UJ9 C03 S01 SING N N 20 UJ9 C24 C25 SING N N 21 UJ9 N05 C25 SING N N 22 UJ9 N05 C06 SING N N 23 UJ9 C04 C05 SING N N 24 UJ9 N02 C5 SING N N 25 UJ9 S01 C01 SING N N 26 UJ9 C05 C11 SING N N 27 UJ9 C05 N01 DOUB N N 28 UJ9 O05 C11 DOUB N N 29 UJ9 C5 C01 SING N N 30 UJ9 C5 C15 SING N N 31 UJ9 C01 N01 SING N N 32 UJ9 O1 C15 SING N N 33 UJ9 C11 O04 SING N N 34 UJ9 C5 H1 SING N N 35 UJ9 C15 H2 SING N N 36 UJ9 C15 H3 SING N N 37 UJ9 C01 H4 SING N N 38 UJ9 O1 H5 SING N N 39 UJ9 C02 H6 SING N N 40 UJ9 C02 H7 SING N N 41 UJ9 N02 H8 SING N N 42 UJ9 C03 H9 SING N N 43 UJ9 C03 H10 SING N N 44 UJ9 C04 H11 SING N N 45 UJ9 N04 H12 SING N N 46 UJ9 N04 H13 SING N N 47 UJ9 O04 H14 SING N N 48 UJ9 C06 H15 SING N N 49 UJ9 C06 H16 SING N N 50 UJ9 C06 H17 SING N N 51 UJ9 C09 H18 SING N N 52 UJ9 C09 H19 SING N N 53 UJ9 C09 H20 SING N N 54 UJ9 C14 H21 SING N N 55 UJ9 C22 H22 SING N N 56 UJ9 C22 H23 SING N N 57 UJ9 C23 H24 SING N N 58 UJ9 C23 H25 SING N N 59 UJ9 C24 H26 SING N N 60 UJ9 C24 H27 SING N N 61 UJ9 C25 H28 SING N N 62 UJ9 C25 H29 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UJ9 InChI InChI 1.06 "InChI=1S/C19H28N6O5S2/c1-25(5-3-4-6-25)7-11-9-31-17(23-14(11)18(28)29)12(8-26)21-16(27)15(24-30-2)13-10-32-19(20)22-13/h10-12,17,26H,3-9H2,1-2H3,(H3-,20,21,22,27,28,29)/p+1/b24-15-/t11-,12-,17-/m1/s1" UJ9 InChIKey InChI 1.06 XJYXJMZNAZABOJ-BNWKVGSUSA-O UJ9 SMILES_CANONICAL CACTVS 3.385 "CO\N=C(/C(=O)N[C@H](CO)[C@H]1SC[C@@H](C[N+]2(C)CCCC2)C(=N1)C(O)=O)c3csc(N)n3" UJ9 SMILES CACTVS 3.385 "CON=C(C(=O)N[CH](CO)[CH]1SC[CH](C[N+]2(C)CCCC2)C(=N1)C(O)=O)c3csc(N)n3" UJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[N+]1(CCCC1)C[C@@H]2CS[C@@H](N=C2C(=O)O)[C@@H](CO)NC(=O)/C(=N\OC)/c3csc(n3)N" UJ9 SMILES "OpenEye OEToolkits" 2.0.7 "C[N+]1(CCCC1)CC2CSC(N=C2C(=O)O)C(CO)NC(=O)C(=NOC)c3csc(n3)N" # _pdbx_chem_comp_identifier.comp_id UJ9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},5~{S})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanyl-ethyl]-5-[(1-methylpyrrolidin-1-ium-1-yl)methyl]-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 UJ9 "(2R,5S)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanyl-ethyl]-5-[(1-methylpyrrolidin-1-ium-1-yl)methyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" PDB ? 2 UJ9 "Cefepimum (reacted)" PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UJ9 "Create component" 2023-02-06 PDBE UJ9 "Initial release" 2024-09-04 RCSB #