data_UJR # _chem_comp.id UJR _chem_comp.name "(2~{R})-2-azanyl-3-(5-iodanylpyrimidin-2-yl)sulfanyl-propanal" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H8 I N3 O S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms "arylated cysteine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-06 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.127 _chem_comp.one_letter_code C _chem_comp.three_letter_code UJR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CG7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UJR N1 N1 N 0 1 Y N N N N N 87.847 66.140 -21.311 -0.123 -1.857 0.021 N1 UJR 1 UJR N2 N2 N 0 1 Y N N N N N 89.063 66.451 -19.275 -0.729 0.371 0.160 N2 UJR 2 UJR C5 C5 C 0 1 Y N N N N N 87.954 66.154 -18.589 0.536 0.755 0.117 C5 UJR 3 UJR C4 C4 C 0 1 Y N N N N N 86.761 65.840 -19.211 1.531 -0.206 0.021 C4 UJR 4 UJR C3 C3 C 0 1 Y N N N N N 86.755 65.845 -20.594 1.160 -1.542 -0.026 C3 UJR 5 UJR C2 C2 C 0 1 Y N N N N N 88.939 66.425 -20.602 -1.050 -0.914 0.113 C2 UJR 6 UJR O O O 0 1 N N N Y N Y 89.276 65.126 -25.900 -6.453 1.824 -0.396 O UJR 7 UJR C C C 0 1 N N N Y N Y 88.946 65.020 -24.744 -5.680 1.458 0.456 C UJR 8 UJR CA CA C 0 1 N N R Y N N 89.946 65.138 -23.611 -5.039 0.098 0.358 CA UJR 9 UJR N N N 0 1 N N N Y Y N 91.279 64.684 -24.020 -5.515 -0.581 -0.855 N UJR 10 UJR CB CB C 0 1 N N N N N N 90.011 66.607 -23.207 -3.518 0.254 0.291 CB UJR 11 UJR S S S 0 1 N N N N N N 90.413 66.821 -21.463 -2.748 -1.380 0.173 S UJR 12 UJR I I I 0 1 N N N N N N 85.043 65.378 -18.096 3.550 0.347 -0.050 I UJR 13 UJR H1 H1 H 0 1 N N N N N N 87.992 66.160 -17.510 0.790 1.803 0.155 H1 UJR 14 UJR H4 H2 H 0 1 N N N N N N 85.839 65.603 -21.113 1.911 -2.315 -0.101 H2 UJR 15 UJR H3 H3 H 0 1 N N N Y N Y 87.908 64.836 -24.510 -5.447 2.106 1.288 H3 UJR 16 UJR HA H4 H 0 1 N N N Y N N 89.595 64.544 -22.754 -5.305 -0.494 1.234 H4 UJR 17 UJR H H5 H 0 1 N N N Y Y N 91.913 64.775 -23.252 -5.280 -0.053 -1.681 H5 UJR 18 UJR H2 H6 H 0 1 N Y N Y Y N 91.233 63.726 -24.302 -5.149 -1.520 -0.910 H6 UJR 19 UJR H8 H8 H 0 1 N N N N N N 90.783 67.106 -23.812 -3.252 0.845 -0.585 H8 UJR 20 UJR H9 H9 H 0 1 N N N N N N 89.034 67.071 -23.404 -3.165 0.758 1.191 H9 UJR 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UJR O C DOUB N N 1 UJR C CA SING N N 2 UJR N CA SING N N 3 UJR CA CB SING N N 4 UJR CB S SING N N 5 UJR S C2 SING N N 6 UJR N1 C2 DOUB Y N 7 UJR N1 C3 SING Y N 8 UJR C2 N2 SING Y N 9 UJR C3 C4 DOUB Y N 10 UJR N2 C5 DOUB Y N 11 UJR C4 C5 SING Y N 12 UJR C4 I SING N N 13 UJR C5 H1 SING N N 14 UJR C3 H4 SING N N 15 UJR C H3 SING N N 16 UJR CA HA SING N N 17 UJR N H SING N N 18 UJR N H2 SING N N 19 UJR CB H8 SING N N 20 UJR CB H9 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UJR InChI InChI 1.06 "InChI=1S/C7H8IN3OS/c8-5-1-10-7(11-2-5)13-4-6(9)3-12/h1-3,6H,4,9H2/t6-/m1/s1" UJR InChIKey InChI 1.06 MJAWREUUBHZDOO-ZCFIWIBFSA-N UJR SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CSc1ncc(I)cn1)C=O" UJR SMILES CACTVS 3.385 "N[CH](CSc1ncc(I)cn1)C=O" UJR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)SC[C@@H](C=O)N)I" UJR SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)SCC(C=O)N)I" # _pdbx_chem_comp_identifier.comp_id UJR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-3-(5-iodanylpyrimidin-2-yl)sulfanyl-propanal" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UJR "Create component" 2023-02-06 PDBE UJR "Modify backbone" 2023-11-03 PDBE UJR "Initial release" 2023-12-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UJR _pdbx_chem_comp_synonyms.name "arylated cysteine" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #