data_UJT # _chem_comp.id UJT _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-(3-oxidanylpropyl)amino]methyl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H33 N11 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-06 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 627.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UJT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QGG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UJT N1 N1 N 0 1 Y N N N N N 19.695 4.080 7.699 -7.902 2.439 0.770 N1 UJT 1 UJT C7 C1 C 0 1 N N N N N N 14.067 9.747 10.513 -0.998 -2.790 -0.434 C7 UJT 2 UJT C8 C2 C 0 1 N N N N N N 13.035 8.460 12.306 -0.156 -0.734 -1.396 C8 UJT 3 UJT N2 N2 N 0 1 Y N N N N N 19.214 6.228 8.674 -6.242 1.076 1.622 N2 UJT 4 UJT C9 C3 C 0 1 N N N N N N 13.052 7.141 11.548 -0.672 -1.176 -2.767 C9 UJT 5 UJT O1 O1 O 0 1 N N N N N N 10.911 6.386 12.388 -1.646 -0.360 -4.823 O1 UJT 6 UJT C1 C4 C 0 1 Y N N N N N 19.999 5.195 8.368 -7.273 1.877 1.786 C1 UJT 7 UJT O5 O2 O 0 1 N N N N N N 18.959 9.425 16.171 3.244 3.232 -0.322 O5 UJT 8 UJT C5 C5 C 0 1 N N R N N N 16.936 8.234 8.902 -3.821 -0.773 0.684 C5 UJT 9 UJT C6 C6 C 0 1 N N R N N N 15.440 9.668 9.880 -1.986 -2.144 0.539 C6 UJT 10 UJT N3 N3 N 0 1 Y N N N N N 16.919 6.917 8.285 -4.769 0.025 -0.097 N3 UJT 11 UJT C4 C7 C 0 1 Y N N N N N 17.518 4.955 7.484 -6.424 1.369 -0.710 C4 UJT 12 UJT O4 O3 O 0 1 N N N N N N 19.327 6.851 15.716 0.872 3.030 0.580 O4 UJT 13 UJT C3 C8 C 0 1 Y N N N N N 15.881 6.305 7.628 -4.802 0.138 -1.455 C3 UJT 14 UJT O3 O4 O 0 1 N N N N N N 15.945 7.479 13.209 0.579 -0.454 3.360 O3 UJT 15 UJT C2 C9 C 0 1 Y N N N N N 17.975 6.050 8.197 -5.788 0.796 0.404 C2 UJT 16 UJT N4 N4 N 0 1 Y N N N N N 16.184 5.133 7.128 -5.773 0.927 -1.812 N4 UJT 17 UJT N N5 N 0 1 N N N N N N 18.125 2.773 6.623 -8.187 2.812 -1.541 N UJT 18 UJT C C10 C 0 1 Y N N N N N 18.435 3.920 7.240 -7.520 2.219 -0.483 C UJT 19 UJT O O5 O 0 1 N N N N N N 15.890 8.304 9.852 -2.608 -0.991 -0.068 O UJT 20 UJT C10 C11 C 0 1 N N N N N N 12.275 6.044 12.227 -1.057 0.056 -3.589 C10 UJT 21 UJT C11 C12 C 0 1 N N N N N N 14.473 10.401 12.880 1.303 -2.654 -1.177 C11 UJT 22 UJT C12 C13 C 0 1 N N N N N N 15.886 10.799 12.882 2.558 -1.946 -0.880 C12 UJT 23 UJT C13 C14 C 0 1 N N N N N N 17.069 11.010 12.867 3.559 -1.380 -0.642 C13 UJT 24 UJT C14 C15 C 0 1 Y N N N N N 18.457 11.314 12.826 4.780 -0.691 -0.352 C14 UJT 25 UJT C15 C16 C 0 1 Y N N N N N 20.331 12.239 12.390 6.897 -0.196 -0.285 C15 UJT 26 UJT C16 C17 C 0 1 Y N N N N N 21.405 13.002 11.898 8.296 -0.096 -0.385 C16 UJT 27 UJT C17 C18 C 0 1 Y N N N N N 22.802 11.343 12.698 8.212 1.857 0.842 C17 UJT 28 UJT C18 C19 C 0 1 Y N N N N N 20.643 11.033 12.992 6.210 0.809 0.422 C18 UJT 29 UJT C19 C20 C 0 1 N N R N N N 19.292 9.093 13.817 3.771 1.222 0.965 C19 UJT 30 UJT C20 C21 C 0 1 N N R N N N 18.315 7.028 13.515 1.632 1.040 1.778 C20 UJT 31 UJT C21 C22 C 0 1 N N N N N N 17.012 6.594 12.884 0.481 0.063 2.031 C21 UJT 32 UJT C22 C23 C 0 1 N N S N N N 18.227 7.401 15.003 1.456 1.736 0.411 C22 UJT 33 UJT C23 C24 C 0 1 N N R N N N 18.345 8.926 14.988 2.895 1.859 -0.136 C23 UJT 34 UJT C24 C25 C 0 1 N N S N N N 15.471 10.084 8.419 -3.154 -3.110 0.839 C24 UJT 35 UJT C25 C26 C 0 1 N N R N N N 16.745 9.394 7.910 -4.389 -2.187 0.937 C25 UJT 36 UJT N10 N6 N 0 1 Y N N N N N 19.436 10.429 13.262 4.880 0.475 0.367 N10 UJT 37 UJT N5 N7 N 0 1 N N N N N N 14.141 9.345 11.923 0.174 -1.918 -0.592 N5 UJT 38 UJT N6 N8 N 0 1 Y N N N N N 18.958 12.417 12.314 5.976 -1.079 -0.729 N6 UJT 39 UJT N7 N9 N 0 1 N N N N N N 21.253 14.114 11.168 9.027 -1.053 -1.067 N7 UJT 40 UJT N8 N10 N 0 1 Y N N N N N 22.651 12.522 12.087 8.901 0.939 0.190 N8 UJT 41 UJT N9 N11 N 0 1 Y N N N N N 21.865 10.529 13.187 6.902 1.806 0.963 N9 UJT 42 UJT O2 O6 O 0 1 N N N N N N 18.826 8.197 12.832 2.884 0.328 1.671 O2 UJT 43 UJT O6 O7 O 0 1 N N N N N N 15.549 11.500 8.325 -2.937 -3.789 2.078 O6 UJT 44 UJT O7 O8 O 0 1 N N N N N N 17.878 10.252 7.971 -4.972 -2.267 2.239 O7 UJT 45 UJT H8 H1 H 0 1 N N N N N N 13.695 10.780 10.448 -0.681 -3.757 -0.042 H8 UJT 46 UJT H9 H2 H 0 1 N N N N N N 13.380 9.075 9.978 -1.479 -2.931 -1.401 H9 UJT 47 UJT H10 H3 H 0 1 N N N N N N 13.110 8.248 13.383 0.737 -0.122 -1.525 H10 UJT 48 UJT H11 H4 H 0 1 N N N N N N 12.085 8.974 12.098 -0.925 -0.153 -0.888 H11 UJT 49 UJT H13 H5 H 0 1 N N N N N N 12.619 7.308 10.551 0.108 -1.731 -3.288 H13 UJT 50 UJT H12 H6 H 0 1 N N N N N N 14.097 6.813 11.444 -1.546 -1.814 -2.638 H12 UJT 51 UJT H16 H7 H 0 1 N N N N N N 10.454 5.673 12.818 -1.845 0.368 -5.428 H16 UJT 52 UJT H6 H8 H 0 1 N N N N N N 21.021 5.270 8.708 -7.616 2.083 2.789 H6 UJT 53 UJT H28 H9 H 0 1 N N N N N N 19.014 10.372 16.124 2.647 3.714 -0.911 H28 UJT 54 UJT H H10 H 0 1 N N N N N N 17.902 8.378 9.408 -3.597 -0.279 1.630 H UJT 55 UJT H1 H11 H 0 1 N N N N N N 16.142 10.293 10.451 -1.480 -1.863 1.462 H1 UJT 56 UJT H26 H12 H 0 1 N N N N N N 19.261 7.089 16.633 -0.010 3.014 0.976 H26 UJT 57 UJT H7 H13 H 0 1 N N N N N N 14.902 6.750 7.532 -4.121 -0.354 -2.134 H7 UJT 58 UJT H24 H14 H 0 1 N N N N N N 15.145 7.176 12.797 -0.120 -1.081 3.590 H24 UJT 59 UJT H5 H15 H 0 1 N N N N N N 18.929 2.179 6.599 -8.942 3.396 -1.372 H5 UJT 60 UJT H4 H16 H 0 1 N N N N N N 17.388 2.316 7.120 -7.898 2.643 -2.452 H4 UJT 61 UJT H15 H17 H 0 1 N N N N N N 12.343 5.130 11.618 -1.773 0.657 -3.029 H15 UJT 62 UJT H14 H18 H 0 1 N N N N N N 12.714 5.858 13.218 -0.166 0.649 -3.793 H14 UJT 63 UJT H18 H19 H 0 1 N N N N N N 13.867 11.287 12.638 1.171 -2.723 -2.257 H18 UJT 64 UJT H17 H20 H 0 1 N N N N N N 14.215 10.044 13.888 1.342 -3.657 -0.752 H17 UJT 65 UJT H21 H21 H 0 1 N N N N N N 23.821 11.003 12.811 8.743 2.681 1.295 H21 UJT 66 UJT H2 H22 H 0 1 N N N N N N 20.284 8.757 14.152 4.152 1.989 1.640 H2 UJT 67 UJT H3 H23 H 0 1 N N N N N N 19.039 6.206 13.413 1.683 1.779 2.577 H3 UJT 68 UJT H23 H24 H 0 1 N N N N N N 17.136 6.572 11.791 0.538 -0.758 1.317 H23 UJT 69 UJT H22 H25 H 0 1 N N N N N N 16.760 5.586 13.245 -0.469 0.583 1.913 H22 UJT 70 UJT H25 H26 H 0 1 N N N N N N 17.259 7.090 15.423 0.843 1.125 -0.253 H25 UJT 71 UJT H27 H27 H 0 1 N N N N N N 17.372 9.396 14.784 2.999 1.310 -1.072 H27 UJT 72 UJT H29 H28 H 0 1 N N N N N N 14.591 9.688 7.891 -3.276 -3.826 0.027 H29 UJT 73 UJT H31 H29 H 0 1 N N N N N N 16.584 9.001 6.895 -5.121 -2.447 0.173 H31 UJT 74 UJT H19 H31 H 0 1 N N N N N N 22.148 14.434 10.857 8.574 -1.803 -1.483 H19 UJT 75 UJT H20 H32 H 0 1 N N N N N N 20.676 13.916 10.375 9.992 -0.973 -1.130 H20 UJT 76 UJT H30 H33 H 0 1 N N N N N N 15.568 11.757 7.410 -3.640 -4.408 2.316 H30 UJT 77 UJT H32 H34 H 0 1 N N N N N N 18.643 9.790 7.649 -5.344 -3.134 2.451 H32 UJT 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UJT N C SING N N 1 UJT C N1 DOUB Y N 2 UJT N1 C1 SING Y N 3 UJT C1 N2 DOUB Y N 4 UJT N2 C2 SING Y N 5 UJT C2 N3 SING Y N 6 UJT C3 N3 SING Y N 7 UJT N4 C3 DOUB Y N 8 UJT C4 N4 SING Y N 9 UJT C C4 SING Y N 10 UJT C2 C4 DOUB Y N 11 UJT N3 C5 SING N N 12 UJT C5 O SING N N 13 UJT O C6 SING N N 14 UJT C7 C6 SING N N 15 UJT N5 C7 SING N N 16 UJT C8 N5 SING N N 17 UJT C9 C8 SING N N 18 UJT C10 C9 SING N N 19 UJT O1 C10 SING N N 20 UJT C11 N5 SING N N 21 UJT C12 C11 SING N N 22 UJT C13 C12 TRIP N N 23 UJT C14 C13 SING N N 24 UJT C14 N6 DOUB Y N 25 UJT N6 C15 SING Y N 26 UJT C15 C16 DOUB Y N 27 UJT N7 C16 SING N N 28 UJT C16 N8 SING Y N 29 UJT N8 C17 DOUB Y N 30 UJT C17 N9 SING Y N 31 UJT N9 C18 DOUB Y N 32 UJT C15 C18 SING Y N 33 UJT C18 N10 SING Y N 34 UJT N10 C14 SING Y N 35 UJT C19 N10 SING N N 36 UJT C19 O2 SING N N 37 UJT O2 C20 SING N N 38 UJT C21 C20 SING N N 39 UJT O3 C21 SING N N 40 UJT C20 C22 SING N N 41 UJT O4 C22 SING N N 42 UJT C22 C23 SING N N 43 UJT C23 C19 SING N N 44 UJT O5 C23 SING N N 45 UJT C6 C24 SING N N 46 UJT O6 C24 SING N N 47 UJT C24 C25 SING N N 48 UJT C5 C25 SING N N 49 UJT C25 O7 SING N N 50 UJT C7 H8 SING N N 51 UJT C7 H9 SING N N 52 UJT C8 H10 SING N N 53 UJT C8 H11 SING N N 54 UJT C9 H13 SING N N 55 UJT C9 H12 SING N N 56 UJT O1 H16 SING N N 57 UJT C1 H6 SING N N 58 UJT O5 H28 SING N N 59 UJT C5 H SING N N 60 UJT C6 H1 SING N N 61 UJT O4 H26 SING N N 62 UJT C3 H7 SING N N 63 UJT O3 H24 SING N N 64 UJT N H5 SING N N 65 UJT N H4 SING N N 66 UJT C10 H15 SING N N 67 UJT C10 H14 SING N N 68 UJT C11 H18 SING N N 69 UJT C11 H17 SING N N 70 UJT C17 H21 SING N N 71 UJT C19 H2 SING N N 72 UJT C20 H3 SING N N 73 UJT C21 H23 SING N N 74 UJT C21 H22 SING N N 75 UJT C22 H25 SING N N 76 UJT C23 H27 SING N N 77 UJT C24 H29 SING N N 78 UJT C25 H31 SING N N 79 UJT N7 H19 SING N N 80 UJT N7 H20 SING N N 81 UJT O6 H30 SING N N 82 UJT O7 H32 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UJT InChI InChI 1.06 "InChI=1S/C26H33N11O8/c27-21-15-23(31-9-29-21)36(11-33-15)25-19(42)17(40)12(44-25)7-35(5-2-6-38)4-1-3-14-34-16-22(28)30-10-32-24(16)37(14)26-20(43)18(41)13(8-39)45-26/h9-13,17-20,25-26,38-43H,2,4-8H2,(H2,27,29,31)(H2,28,30,32)/t12-,13+,17+,18+,19+,20+,25-,26-/m0/s1" UJT InChIKey InChI 1.06 FIHPXHNEJQUZOK-ILVBEZOOSA-N UJT SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN(CCCO)CC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CO)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O" UJT SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN(CCCO)CC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CO)[CH](O)[CH]6O)[CH](O)[CH]3O" UJT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCCO)CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)O)N)O)O)N" UJT SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCO)CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CO)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id UJT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-(3-oxidanylpropyl)amino]methyl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UJT "Create component" 2023-09-06 PDBE UJT "Initial release" 2025-03-19 RCSB #