data_UKF # _chem_comp.id UKF _chem_comp.name "(2R,3R,4R,5S)-1-(6-{[(4P)-4-(5-cyclobutyl-1,2,4-oxadiazol-3-yl)-2-nitrophenyl]amino}hexyl)-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-22 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UKF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E4Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UKF N1 N1 N 0 1 N N N -35.583 -30.289 -68.789 6.972 -0.156 -0.097 N1 UKF 1 UKF N3 N2 N 1 1 N N N -43.456 -25.684 -63.259 -3.619 3.391 0.539 N3 UKF 2 UKF C4 C1 C 0 1 N N N -36.484 -29.604 -68.302 5.865 0.789 0.109 C4 UKF 3 UKF C5 C2 C 0 1 N N N -36.559 -29.878 -66.739 4.532 0.051 -0.032 C5 UKF 4 UKF C6 C3 C 0 1 N N N -37.774 -29.284 -66.067 3.380 1.035 0.183 C6 UKF 5 UKF C7 C4 C 0 1 N N N -37.946 -29.680 -64.564 2.047 0.297 0.042 C7 UKF 6 UKF C8 C5 C 0 1 N N N -39.138 -28.758 -63.870 0.895 1.281 0.257 C8 UKF 7 UKF C10 C6 C 0 1 Y N N -42.562 -27.063 -65.191 -2.861 1.041 0.242 C10 UKF 8 UKF C13 C7 C 0 1 Y N N -44.922 -26.316 -66.585 -5.483 0.160 0.085 C13 UKF 9 UKF C15 C8 C 0 1 Y N N -48.084 -24.881 -67.813 -8.603 -1.542 -0.189 C15 UKF 10 UKF C17 C9 C 0 1 N N N -50.440 -24.417 -68.668 -10.455 -2.593 -1.588 C17 UKF 11 UKF C20 C10 C 0 1 Y N N -43.951 -27.171 -67.225 -4.432 -0.753 -0.009 C20 UKF 12 UKF C21 C11 C 0 1 Y N N -42.761 -27.522 -66.497 -3.129 -0.311 0.065 C21 UKF 13 UKF C22 C12 C 0 1 N N N -35.899 -31.731 -68.897 6.991 -1.181 0.954 C22 UKF 14 UKF C24 C13 C 0 1 N N R -33.564 -32.313 -69.224 9.426 -1.541 0.534 C24 UKF 15 UKF C1 C14 C 0 1 N N R -33.228 -30.900 -69.020 9.365 -0.445 -0.534 C1 UKF 16 UKF C11 C15 C 0 1 Y N N -43.561 -26.200 -64.585 -3.907 1.952 0.345 C11 UKF 17 UKF C12 C16 C 0 1 Y N N -44.740 -25.842 -65.305 -5.212 1.515 0.267 C12 UKF 18 UKF C14 C17 C 0 1 Y N N -46.184 -25.844 -67.326 -6.886 -0.312 0.001 C14 UKF 19 UKF C16 C18 C 0 1 N N N -49.329 -24.099 -67.701 -9.540 -2.710 -0.357 C16 UKF 20 UKF C18 C19 C 0 1 N N N -50.031 -23.177 -69.533 -11.452 -1.857 -0.678 C18 UKF 21 UKF C19 C20 C 0 1 N N N -49.196 -22.696 -68.378 -10.812 -2.609 0.501 C19 UKF 22 UKF C2 C21 C 0 1 N N R -34.246 -30.128 -68.146 8.258 0.549 -0.175 C2 UKF 23 UKF C23 C22 C 0 1 N N S -34.868 -32.350 -69.863 8.060 -2.227 0.628 C23 UKF 24 UKF C3 C23 C 0 1 N N N -33.819 -28.642 -68.131 8.179 1.635 -1.250 C3 UKF 25 UKF C9 C24 C 0 1 N N N -40.473 -28.695 -64.741 -0.438 0.543 0.116 C9 UKF 26 UKF N2 N3 N 0 1 N N N -41.373 -27.440 -64.438 -1.541 1.485 0.322 N2 UKF 27 UKF N4 N4 N 0 1 Y N N -46.445 -26.077 -68.625 -7.961 0.430 0.077 N4 UKF 28 UKF N5 N5 N 0 1 Y N N -47.172 -25.076 -66.804 -7.294 -1.590 -0.174 N5 UKF 29 UKF O1 O1 O 0 1 N N N -31.868 -30.754 -68.539 10.619 0.238 -0.590 O1 UKF 30 UKF O2 O2 O 0 1 N N N -33.975 -28.133 -69.385 7.962 1.028 -2.525 O2 UKF 31 UKF O3 O3 O 0 1 N N N -43.130 -24.286 -63.057 -4.326 4.060 1.271 O3 UKF 32 UKF O4 O4 O -1 1 N N N -43.719 -26.625 -62.174 -2.675 3.905 -0.033 O4 UKF 33 UKF O5 O5 O 0 1 Y N N -47.614 -25.483 -68.867 -8.952 -0.261 -0.032 O5 UKF 34 UKF O6 O6 O 0 1 N N N -35.120 -33.721 -70.187 8.092 -3.213 1.662 O6 UKF 35 UKF O7 O7 O 0 1 N N N -32.640 -32.962 -70.147 10.420 -2.502 0.175 O7 UKF 36 UKF H2 H2 H 0 1 N N N -36.274 -28.539 -68.480 5.938 1.221 1.107 H2 UKF 37 UKF H3 H3 H 0 1 N N N -37.443 -29.871 -68.769 5.922 1.583 -0.636 H3 UKF 38 UKF H4 H4 H 0 1 N N N -36.573 -30.966 -66.579 4.460 -0.381 -1.030 H4 UKF 39 UKF H5 H5 H 0 1 N N N -35.661 -29.450 -66.270 4.476 -0.743 0.713 H5 UKF 40 UKF H6 H6 H 0 1 N N N -37.698 -28.188 -66.126 3.453 1.467 1.181 H6 UKF 41 UKF H7 H7 H 0 1 N N N -38.667 -29.619 -66.614 3.437 1.829 -0.562 H7 UKF 42 UKF H8 H8 H 0 1 N N N -38.221 -30.743 -64.496 1.975 -0.135 -0.956 H8 UKF 43 UKF H9 H9 H 0 1 N N N -36.998 -29.512 -64.032 1.991 -0.496 0.787 H9 UKF 44 UKF H10 H10 H 0 1 N N N -38.757 -27.734 -63.740 0.967 1.713 1.255 H10 UKF 45 UKF H11 H11 H 0 1 N N N -39.382 -29.186 -62.886 0.951 2.075 -0.488 H11 UKF 46 UKF H12 H12 H 0 1 N N N -51.448 -24.350 -68.233 -10.043 -1.969 -2.380 H12 UKF 47 UKF H13 H13 H 0 1 N N N -50.326 -25.382 -69.183 -10.821 -3.553 -1.952 H13 UKF 48 UKF H14 H14 H 0 1 N N N -44.114 -27.539 -68.227 -4.640 -1.803 -0.150 H14 UKF 49 UKF H15 H15 H 0 1 N N N -42.014 -28.146 -66.964 -2.315 -1.017 -0.015 H15 UKF 50 UKF H16 H16 H 0 1 N N N -36.916 -31.866 -69.294 7.219 -0.715 1.912 H16 UKF 51 UKF H17 H17 H 0 1 N N N -35.825 -32.209 -67.909 6.015 -1.664 1.008 H17 UKF 52 UKF H18 H18 H 0 1 N N N -33.588 -32.846 -68.262 9.678 -1.097 1.497 H18 UKF 53 UKF H19 H19 H 0 1 N N N -33.266 -30.423 -70.011 9.151 -0.893 -1.504 H19 UKF 54 UKF H20 H20 H 0 1 N N N -45.483 -25.205 -64.850 -6.024 2.224 0.340 H20 UKF 55 UKF H21 H21 H 0 1 N N N -49.688 -24.014 -66.665 -9.034 -3.673 -0.279 H21 UKF 56 UKF H22 H22 H 0 1 N N N -49.456 -23.423 -70.438 -11.298 -0.778 -0.643 H22 UKF 57 UKF H23 H23 H 0 1 N N N -50.866 -22.512 -69.798 -12.492 -2.131 -0.858 H23 UKF 58 UKF H24 H24 H 0 1 N N N -48.166 -22.424 -68.651 -11.277 -3.573 0.708 H24 UKF 59 UKF H25 H25 H 0 1 N N N -49.652 -21.875 -67.805 -10.688 -1.997 1.394 H25 UKF 60 UKF H26 H26 H 0 1 N N N -34.250 -30.532 -67.123 8.479 1.008 0.789 H26 UKF 61 UKF H27 H27 H 0 1 N N N -34.846 -31.746 -70.782 7.825 -2.703 -0.323 H27 UKF 62 UKF H28 H28 H 0 1 N N N -32.765 -28.562 -67.827 7.355 2.312 -1.024 H28 UKF 63 UKF H29 H29 H 0 1 N N N -34.448 -28.083 -67.423 9.114 2.195 -1.269 H29 UKF 64 UKF H30 H30 H 0 1 N N N -41.062 -29.601 -64.538 -0.511 0.111 -0.882 H30 UKF 65 UKF H31 H31 H 0 1 N N N -40.192 -28.671 -65.804 -0.495 -0.250 0.861 H31 UKF 66 UKF H32 H32 H 0 1 N N N -40.760 -26.652 -64.496 -1.354 2.417 0.513 H32 UKF 67 UKF H33 H33 H 0 1 N N N -31.673 -29.833 -68.414 11.368 -0.333 -0.809 H33 UKF 68 UKF H34 H34 H 0 1 N N N -33.716 -27.219 -69.391 7.901 1.659 -3.256 H34 UKF 69 UKF H35 H35 H 0 1 N N N -35.967 -33.796 -70.610 7.258 -3.689 1.778 H35 UKF 70 UKF H36 H36 H 0 1 N N N -31.767 -32.964 -69.773 10.514 -3.227 0.809 H36 UKF 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UKF O6 C23 SING N N 1 UKF O7 C24 SING N N 2 UKF C23 C24 SING N N 3 UKF C23 C22 SING N N 4 UKF C18 C17 SING N N 5 UKF C18 C19 SING N N 6 UKF O2 C3 SING N N 7 UKF C24 C1 SING N N 8 UKF C1 O1 SING N N 9 UKF C1 C2 SING N N 10 UKF C22 N1 SING N N 11 UKF O5 N4 SING Y N 12 UKF O5 C15 SING Y N 13 UKF N1 C4 SING N N 14 UKF N1 C2 SING N N 15 UKF C17 C16 SING N N 16 UKF N4 C14 DOUB Y N 17 UKF C19 C16 SING N N 18 UKF C4 C5 SING N N 19 UKF C2 C3 SING N N 20 UKF C15 C16 SING N N 21 UKF C15 N5 DOUB Y N 22 UKF C14 N5 SING Y N 23 UKF C14 C13 SING N N 24 UKF C20 C13 DOUB Y N 25 UKF C20 C21 SING Y N 26 UKF C5 C6 SING N N 27 UKF C13 C12 SING Y N 28 UKF C21 C10 DOUB Y N 29 UKF C6 C7 SING N N 30 UKF C12 C11 DOUB Y N 31 UKF C10 C11 SING Y N 32 UKF C10 N2 SING N N 33 UKF C9 N2 SING N N 34 UKF C9 C8 SING N N 35 UKF C11 N3 SING N N 36 UKF C7 C8 SING N N 37 UKF N3 O3 DOUB N N 38 UKF N3 O4 SING N N 39 UKF C4 H2 SING N N 40 UKF C4 H3 SING N N 41 UKF C5 H4 SING N N 42 UKF C5 H5 SING N N 43 UKF C6 H6 SING N N 44 UKF C6 H7 SING N N 45 UKF C7 H8 SING N N 46 UKF C7 H9 SING N N 47 UKF C8 H10 SING N N 48 UKF C8 H11 SING N N 49 UKF C17 H12 SING N N 50 UKF C17 H13 SING N N 51 UKF C20 H14 SING N N 52 UKF C21 H15 SING N N 53 UKF C22 H16 SING N N 54 UKF C22 H17 SING N N 55 UKF C24 H18 SING N N 56 UKF C1 H19 SING N N 57 UKF C12 H20 SING N N 58 UKF C16 H21 SING N N 59 UKF C18 H22 SING N N 60 UKF C18 H23 SING N N 61 UKF C19 H24 SING N N 62 UKF C19 H25 SING N N 63 UKF C2 H26 SING N N 64 UKF C23 H27 SING N N 65 UKF C3 H28 SING N N 66 UKF C3 H29 SING N N 67 UKF C9 H30 SING N N 68 UKF C9 H31 SING N N 69 UKF N2 H32 SING N N 70 UKF O1 H33 SING N N 71 UKF O2 H34 SING N N 72 UKF O6 H35 SING N N 73 UKF O7 H36 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UKF SMILES ACDLabs 12.01 "OCC1C(O)C(O)C(O)CN1CCCCCCNc1ccc(cc1[N+]([O-])=O)c1nc(on1)C1CCC1" UKF InChI InChI 1.06 "InChI=1S/C24H35N5O7/c30-14-19-21(32)22(33)20(31)13-28(19)11-4-2-1-3-10-25-17-9-8-16(12-18(17)29(34)35)23-26-24(36-27-23)15-6-5-7-15/h8-9,12,15,19-22,25,30-33H,1-7,10-11,13-14H2/t19-,20+,21-,22-/m1/s1" UKF InChIKey InChI 1.06 QTIHMFZOPONAII-CIAFKFPVSA-N UKF SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)c3noc(n3)C4CCC4" UKF SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)c3noc(n3)C4CCC4" UKF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2nc(on2)C3CCC3)[N+](=O)[O-])NCCCCCCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O" UKF SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2nc(on2)C3CCC3)[N+](=O)[O-])NCCCCCCN4CC(C(C(C4CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UKF "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-(6-{[(4P)-4-(5-cyclobutyl-1,2,4-oxadiazol-3-yl)-2-nitrophenyl]amino}hexyl)-2-(hydroxymethyl)piperidine-3,4,5-triol" UKF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[6-[[4-(5-cyclobutyl-1,2,4-oxadiazol-3-yl)-2-nitro-phenyl]amino]hexyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UKF "Create component" 2022-08-22 RCSB UKF "Initial release" 2023-02-22 RCSB #